Rorug04G0128400

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
20460819 .. 20462587
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0128400.1

Sequence Viewer

Length: 324 bp
ATGGAATCCATGACAGTAATTGCAGAAGGTAACTCTTACATGAACTTGAACAGTGTCTTGATGTTAACTGGAACCAACTATAAAGCTTGGCTAGACTCTGTGGAAAACTATATGGGAATGCATGAGAACATAGACTATTGTTTTACTGAGGATAAGCCTGAAGAGCTAAATGAAAAGAGCACCAAGAAAGATACTGACCTTTACAAGAAGTGGCATAGATCAAATAGAATGGCTAAGAACCTCATCCGAACATCTATGTCTAAGACTGTCAGGGGAAGTATAGAAGAGCCTGAGCTAGCATCAGATTTTCCGGAACACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.45

Weight (kDa)

5.16

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 3 cut(s) 86, 166, 295
AluI AGCT 3 cut(s) 86, 166, 295
Alw21I GWGCWC 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 310
AsuNHI GCTAGC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 182
BfaI CTAG 2 cut(s) 92, 296
BmiI GGNNCC 1 cut(s) 73
BmsI GCATC 1 cut(s) 308
BmtI GCTAGC 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 73
BseAI TCCGGA 1 cut(s) 310
BseGI GGATG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 138, 282
BseNI ACTGG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 311
BsmI GAATGC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 139, 283
BspEI TCCGGA 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 299
BspQI GCTCTTC 2 cut(s) 156, 279
BsrI ACTGG 1 cut(s) 73
BssMI GATC 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 16, 53, 268
Bst6I CTCTTC 2 cut(s) 156, 279
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 147, 234, 261, 291
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 1 cut(s) 221
BstMBI GATC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 297
CviAII CATG 3 cut(s) 10, 40, 122
CviJI RGCY 7 cut(s) 86, 91, 157, 166, 233, 289, 295
CviKI_1 RGCY 7 cut(s) 86, 91, 157, 166, 233, 289, 295
DdeI CTNAG 4 cut(s) 147, 234, 261, 291
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 156, 279
EarI CTCTTC 2 cut(s) 156, 279
Eco57I CTGAAG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 123
FaeI CATG 3 cut(s) 13, 43, 125
FatI CATG 3 cut(s) 9, 39, 121
FokI GGATG 1 cut(s) 230
FspBI CTAG 2 cut(s) 92, 296
HapII CCGG 1 cut(s) 311
Hin1II CATG 3 cut(s) 13, 43, 125
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 2 cut(s) 5, 95
HpaI GTTAAC 1 cut(s) 66
HpaII CCGG 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 248, 304
Hpy188III TCNNGA 2 cut(s) 58, 311
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 3 cut(s) 16, 53, 268
HpyCH4V TGCA 2 cut(s) 23, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 4 cut(s) 147, 234, 261, 291
Hsp92II CATG 3 cut(s) 13, 43, 125
Kpn2I TCCGGA 1 cut(s) 310
KspAI GTTAAC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 218
LguI GCTCTTC 2 cut(s) 156, 279
LpnPI CCDG 4 cut(s) 54, 171, 256, 303
LweI GCATC 1 cut(s) 308
MaeI CTAG 2 cut(s) 92, 296
MaeIII GTNAC 1 cut(s) 29
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 2 cut(s) 173, 296
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 1 cut(s) 18
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 2 cut(s) 142, 251
Mph1103I ATGCAT 1 cut(s) 123
MroI TCCGGA 1 cut(s) 310
MseI TTAA 1 cut(s) 65
MspI CCGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 1 cut(s) 218
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 3 cut(s) 13, 43, 125
NlaIV GGNNCC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 123
PciSI GCTCTTC 2 cut(s) 156, 279
PctI GAATGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 5
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 73
SapI GCTCTTC 2 cut(s) 156, 279
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 1 cut(s) 218
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 182
SetI ASST 6 cut(s) 31, 88, 168, 201, 243, 297
SfaNI GCATC 1 cut(s) 308
Sse9I AATT 1 cut(s) 18
SspMI CTAG 2 cut(s) 92, 296
TaaI ACNGT 3 cut(s) 16, 53, 268
TasI AATT 1 cut(s) 18
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 56, 186
TspRI CASTG 1 cut(s) 58
XspI CTAG 2 cut(s) 92, 296
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.