Prupe.1G157400_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000637
Physical Location & Seq
Forward (+)
12486787 .. 12488604
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G157400.1

Sequence Viewer

Length: 807 bp
ATGGAGATATCGAAAACATCAGGCAATCGTGATAGACCCGTAGGCAAAGCAAGCCTAGCAAGCCTCAATCCTTCATGCTGGGAACGTCTCATTTTTCCAGACATTAAAATTAGCTATTCCATTTTGTTTTTGAGTAATGGTGGTAAAACATTACAATGGTTTCATGACCCCAAGCTAGAAAGATTTATCCACCAATATCAAATTGATGAGAGTCATTTCTCGACCACTGCGTTTATTAAGTTTGTCGTCAATTGTAGCAATGGACATGCTACTGCTCTCAGTCTACCTCCATGTGCTTCAGAAACAGACTTGAAATATGTTTCAGATGTGTGTGGTGACCTCAAGGCTGTTGGATTGCCTGGGGATTTAGTTAACGACAAATCAGGTGTAATAACAGAGCTGATTGGTAAGTGGAAACGTTTGGAGTGGTTGATGTTGGGAAGCAGCTATGATTTGGTGAAAATCCTCTCACAGATCAGCATTCACTGCAAAGACTTTTGGGGCTTACGTGTGTCTAATGCTGATATTTTTAATGATGAGGCTATTGCAATTGTCAACTTCCTGCCTAAGATTAAGCCTTTGATCTTGAGGAAGGCTGAAATTGATCGGGATGCTCTTATGAAGTTACTGCAAGGTTGCACGGAGCTTCGGGTTCTGGATGTCAGTGATTGTATTGGTTTTAGTGAGGATGATGGGGAACTTTTAAAGCTTCCTTCTCATATTACTAATTTCAGCTGCAAGGGCTCTAACGATGATGATTTCTATGAGGAAGACAGGAATATTTCTTATTTTCGAATCGGGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

269

Amino Acids

30.1

Weight (kDa)

5.42

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 283
AclI AACGTT 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 7 cut(s) 114, 175, 400, 447, 646, 709, 735
AluI AGCT 7 cut(s) 114, 175, 400, 447, 646, 709, 735
Alw26I GTCTC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 444, 735
AsuHPI GGTGA 2 cut(s) 347, 469
AsuII TTCGAA 1 cut(s) 793
BanII GRGCYC 1 cut(s) 746
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 2 cut(s) 456, 722
BccI CCATC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 56, 176
BisI GCNGC 2 cut(s) 445, 736
BlsI GCNGC 2 cut(s) 446, 737
Bme1390I CCNGG 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 777
Bpu14I TTCGAA 1 cut(s) 793
BpuEI CTTGAG 2 cut(s) 326, 607
BsaAI YACGTR 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 3 cut(s) 616, 664, 694
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 292
BseXI GCAGC 2 cut(s) 456, 722
BseYI CCCAGC 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 480
Bsp119I TTCGAA 1 cut(s) 793
Bsp1286I GDGCHC 1 cut(s) 746
Bsp143I GATC 3 cut(s) 474, 582, 604
BspCNI CTCAG 1 cut(s) 291
BspHI TCATGA 1 cut(s) 163
BspT104I TTCGAA 1 cut(s) 793
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 3 cut(s) 474, 582, 604
Bst2UI CCWGG 1 cut(s) 360
BstAPI GCANNNNNTGC 1 cut(s) 486
BstBAI YACGTR 1 cut(s) 509
BstBI TTCGAA 1 cut(s) 793
BstC8I GCNNGC 2 cut(s) 52, 61
BstDEI CTNAG 2 cut(s) 278, 567
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 3 cut(s) 616, 664, 694
BstKTI GATC 3 cut(s) 477, 585, 607
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 474, 582, 604
BstMWI GCNNNNNNNGC 5 cut(s) 51, 56, 60, 486, 741
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 358
BstV1I GCAGC 2 cut(s) 456, 722
BstV2I GAAGAC 1 cut(s) 777
BtsCI GGATG 3 cut(s) 616, 664, 694
BtsI GCAGTG 2 cut(s) 225, 484
BtsIMutI CAGTG 3 cut(s) 225, 484, 670
Cac8I GCNNGC 2 cut(s) 52, 61
CciI TCATGA 1 cut(s) 163
CviAII CATG 4 cut(s) 75, 164, 266, 291
DdeI CTNAG 2 cut(s) 278, 567
DpnI GATC 3 cut(s) 476, 584, 606
DpnII GATC 3 cut(s) 474, 582, 604
DraI TTTAAA 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 358
EcoRV GATATC 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 746
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 4 cut(s) 78, 167, 269, 294
FaiI YATR 9 cut(s) 76, 165, 267, 292, 318, 450, 620, 720, 765
FatI CATG 4 cut(s) 74, 163, 265, 290
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 445, 736
FokI GGATG 3 cut(s) 623, 671, 701
FriOI GRGCYC 1 cut(s) 746
Fsp4HI GCNGC 2 cut(s) 445, 736
FspBI CTAG 2 cut(s) 56, 176
GluI GCNGC 2 cut(s) 445, 736
GsaI CCCAGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 78, 167, 269, 294
HincII GTYRAC 2 cut(s) 373, 556
HindII GTYRAC 2 cut(s) 373, 556
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 2 cut(s) 211, 795
HpaI GTTAAC 1 cut(s) 373
HphI GGTGA 2 cut(s) 347, 469
Hpy166II GTNNAC 3 cut(s) 284, 373, 556
Hpy188I TCNGA 2 cut(s) 301, 325
Hpy188III TCNNGA 8 cut(s) 29, 98, 164, 220, 586, 608, 656, 804
Hpy8I GTNNAC 3 cut(s) 284, 373, 556
HpyAV CCTTC 3 cut(s) 81, 586, 723
HpyCH4IV ACGT 3 cut(s) 85, 418, 508
HpyCH4V TGCA 5 cut(s) 489, 548, 631, 639, 738
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 56, 60, 486, 741
HpyF3I CTNAG 2 cut(s) 278, 567
HpySE526I ACGT 3 cut(s) 85, 418, 508
Hsp92II CATG 4 cut(s) 78, 167, 269, 294
KspAI GTTAAC 1 cut(s) 373
Kzo9I GATC 3 cut(s) 474, 582, 604
LmnI GCTCC 1 cut(s) 643
LpnPI CCDG 9 cut(s) 6, 64, 111, 345, 369, 372, 575, 641, 760
Lsp1109I GCAGC 2 cut(s) 456, 722
LweI GCATC 1 cut(s) 601
MaeI CTAG 2 cut(s) 56, 176
MaeII ACGT 3 cut(s) 85, 418, 508
MaeIII GTNAC 2 cut(s) 335, 624
MalI GATC 3 cut(s) 476, 584, 606
MboI GATC 3 cut(s) 474, 582, 604
MboII GAAGA 1 cut(s) 782
MfeI CAATTG 2 cut(s) 250, 549
MhlI GDGCHC 1 cut(s) 746
MluCI AATT 6 cut(s) 108, 201, 250, 549, 600, 727
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 8 cut(s) 74, 297, 350, 476, 532, 582, 679, 760
MseI TTAA 6 cut(s) 105, 237, 372, 531, 573, 704
MslI CAYNNNNRTG 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 735
MspR9I CCNGG 1 cut(s) 360
MunI CAATTG 2 cut(s) 250, 549
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 5 cut(s) 51, 56, 60, 486, 741
NdeII GATC 3 cut(s) 474, 582, 604
NlaIII CATG 4 cut(s) 78, 167, 269, 294
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 269
NspV TTCGAA 1 cut(s) 793
PagI TCATGA 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 795
PkrI GCNGC 2 cut(s) 446, 737
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Ppu21I YACGTR 1 cut(s) 509
Psp1406I AACGTT 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 358
PspEI GGTNACC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 735
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 6 cut(s) 105, 237, 372, 531, 573, 704
SatI GCNGC 2 cut(s) 445, 736
Sau3AI GATC 3 cut(s) 474, 582, 604
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 746
SfaNI GCATC 1 cut(s) 601
SfuI TTCGAA 1 cut(s) 793
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 341, 586
SmoI CTYRAG 2 cut(s) 341, 586
Sse9I AATT 6 cut(s) 108, 201, 250, 549, 600, 727
SspI AATATT 1 cut(s) 781
SspMI CTAG 2 cut(s) 56, 176
StyD4I CCNGG 1 cut(s) 358
TaiI ACGT 3 cut(s) 88, 421, 511
TaqI TCGA 3 cut(s) 11, 221, 793
TasI AATT 6 cut(s) 108, 201, 250, 549, 600, 727
TfiI GAWTC 1 cut(s) 795
Tru1I TTAA 6 cut(s) 105, 237, 372, 531, 573, 704
Tru9I TTAA 6 cut(s) 105, 237, 372, 531, 573, 704
TscAI CASTG 3 cut(s) 232, 491, 670
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 444, 735
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 3 cut(s) 63, 152, 635
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 3 cut(s) 232, 491, 670
XceI RCATGY 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 2 cut(s) 56, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.