RchiOBHm_Chr4g0414631

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000637
Physical Location & Seq
Reverse (-)
39146678 .. 39148433
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38500

Sequence Viewer

Length: 1065 bp
ATGTTCGTAGGTGAAAGCATTTTCTTTAGTGATGGGTTTGTCGACTCACTTGTGACAGGTCTTTTACCCTACTGGCTTGAGATACCAACAAATGAAGATGCTGGTAAAACTTTATATATATTTGATGATTTTCCAAGCAATGAAGCACAAAAACCGTTCCGGGAAGATCACCAAGCACAAAATACTTATTACGAGATGGAAGATGAACGAAGATGGGAGGAATTAGAGGTTGACTGTTTGATAAATGTATTTGCAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGGTACAGAGCAACCCTCGTCCCTTCATGCTGGCAATATCTCAAATTTCCTGATGATCTGAGTGATCGTACTTTTAGTTATGACCTTAAAGATCTATATTGGTGTACCCTTATTCAAAGATTTATAGATGAGTATCGACTTGATGAGACCCGTTTCTCGGTAACTGCATTTGTTAAGTTCATAATCAGTCGTAGCAAAGGAAAGGCTATTTATCTCAGGCTACCCCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCCTTAAAGCTTCTTGCATTGCCCAGCCGTTTAGTAAACCGTAAGTCGAGCATAATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCTATAATTTGGAAAATTTCCTTGGACAGATCTCCATTCACTGCAAGAACTTGTGTCTTTTGCGTGTGGCTGATGCAAACATTGGTAAAGATGAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTAATCTTGAAGAATGCATATATTGATCGGGATGATCTTGTGACGCTACTGCGGGGCTGCAACGAGCTTGTGTGTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTGATTTCAGCTCTCAGGGTTCCACACTAGATGATTATGATGATTACGATGGACATATTTCCCATGATGAAGATGTTTATGGATACGGTTCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

354

Amino Acids

40.64

Weight (kDa)

4.49

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 874
AcsI RAATTY 3 cut(s) 350, 661, 703
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 4 cut(s) 311, 376, 412, 671
AfiI CCNNNNNNNGG 1 cut(s) 463
AflII CTTAAG 1 cut(s) 815
AgsI TTSAA 4 cut(s) 422, 556, 638, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AluBI AGCT 7 cut(s) 589, 690, 801, 814, 889, 952, 978
AluI AGCT 7 cut(s) 589, 690, 801, 814, 889, 952, 978
Alw26I GTCTC 1 cut(s) 446
ApeKI GCWGC 4 cut(s) 563, 687, 805, 879
ApoI RAATTY 3 cut(s) 350, 661, 703
AseI ATTAAT 1 cut(s) 824
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 23, 161
BbvI GCAGC 4 cut(s) 550, 699, 792, 866
BccI CCATC 4 cut(s) 26, 190, 207, 1010
BceAI ACGGC 1 cut(s) 591
BciVI GTATCC 1 cut(s) 1043
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 1 cut(s) 995
BfmI CTRYAG 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 815
BfuI GTATCC 1 cut(s) 1043
BglII AGATCT 2 cut(s) 397, 717
BisI GCNGC 4 cut(s) 564, 688, 806, 880
BlsI GCNGC 4 cut(s) 565, 689, 807, 881
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 988, 1057
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 88, 751
BplI GAGNNNNNCTC 2 cut(s) 306, 338
Bpu10I CCTNAGC 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 709
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 4 cut(s) 145, 272, 596, 792
Bse8I GATNNNNATC 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 709
BseGI GGATG 3 cut(s) 289, 859, 907
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 4 cut(s) 145, 272, 596, 792
BseMII CTCAG 3 cut(s) 356, 535, 995
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 4 cut(s) 550, 699, 792, 866
BseYI CCCAGC 1 cut(s) 602
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 2 cut(s) 272, 311
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 2 cut(s) 272, 311
BsmI GAATGC 1 cut(s) 841
Bso31I GGTCTC 1 cut(s) 446
Bsp143I GATC 7 cut(s) 166, 361, 370, 397, 717, 847, 856
BspACI CCGC 1 cut(s) 874
BspCNI CTCAG 3 cut(s) 357, 534, 994
BspLI GGNNCC 2 cut(s) 988, 1057
BspMAI CTGCAG 1 cut(s) 568
BspTI CTTAAG 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 4 cut(s) 145, 272, 596, 792
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 709
BssMI GATC 7 cut(s) 166, 361, 370, 397, 717, 847, 856
BssT1I CCWWGG 1 cut(s) 709
Bst4CI ACNGT 4 cut(s) 156, 236, 620, 1055
BstAFI CTTAAG 1 cut(s) 815
BstAPI GCANNNNNTGC 1 cut(s) 953
BstC8I GCNNGC 3 cut(s) 338, 803, 954
BstDEI CTNAG 4 cut(s) 365, 521, 810, 981
BstF5I GGATG 3 cut(s) 289, 859, 907
BstKTI GATC 7 cut(s) 169, 364, 373, 400, 720, 850, 859
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 7 cut(s) 166, 361, 370, 397, 717, 847, 856
BstMWI GCNNNNNNNGC 2 cut(s) 811, 953
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 564
BstV1I GCAGC 4 cut(s) 550, 699, 792, 866
BstX2I RGATCY 2 cut(s) 397, 717
BstYI RGATCY 2 cut(s) 397, 717
BsuI GTATCC 1 cut(s) 1043
BtsCI GGATG 3 cut(s) 289, 859, 907
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 3 cut(s) 338, 803, 954
CseI GACGC 1 cut(s) 874
Csp6I GTAC 4 cut(s) 310, 375, 411, 670
CviAII CATG 4 cut(s) 306, 333, 534, 1031
CviQI GTAC 4 cut(s) 310, 375, 411, 670
DdeI CTNAG 4 cut(s) 365, 521, 810, 981
DpnI GATC 7 cut(s) 168, 363, 372, 399, 719, 849, 858
DpnII GATC 7 cut(s) 166, 361, 370, 397, 717, 847, 856
Eco130I CCWWGG 1 cut(s) 709
Eco31I GGTCTC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 709
EcoT22I ATGCAT 1 cut(s) 841
ErhI CCWWGG 1 cut(s) 709
FaeI CATG 4 cut(s) 309, 336, 537, 1034
FaqI GGGAC 2 cut(s) 272, 311
FatI CATG 4 cut(s) 305, 332, 533, 1030
FauI CCCGC 1 cut(s) 867
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 564, 688, 806, 880
FokI GGATG 3 cut(s) 296, 866, 914
Fsp4HI GCNGC 4 cut(s) 564, 688, 806, 880
FspBI CTAG 1 cut(s) 995
GluI GCNGC 4 cut(s) 564, 688, 806, 880
GsaI CCCAGC 1 cut(s) 606
HapII CCGG 1 cut(s) 160
HgaI GACGC 1 cut(s) 874
Hin1II CATG 4 cut(s) 309, 336, 537, 1034
HincII GTYRAC 2 cut(s) 43, 232
HindII GTYRAC 2 cut(s) 43, 232
HindIII AAGCTT 3 cut(s) 587, 812, 950
HinfI GANTC 2 cut(s) 44, 269
HpaII CCGG 1 cut(s) 160
HphI GGTGA 2 cut(s) 23, 161
Hpy166II GTNNAC 5 cut(s) 43, 232, 411, 616, 657
Hpy188I TCNGA 3 cut(s) 366, 544, 1060
Hpy188III TCNNGA 5 cut(s) 356, 553, 638, 829, 851
Hpy8I GTNNAC 5 cut(s) 43, 232, 411, 616, 657
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 4 cut(s) 156, 236, 620, 1055
HpyCH4V TGCA 9 cut(s) 254, 300, 473, 566, 596, 732, 764, 839, 882
HpyF10VI GCNNNNNNNGC 2 cut(s) 811, 953
HpyF3I CTNAG 4 cut(s) 365, 521, 810, 981
Hsp92II CATG 4 cut(s) 309, 336, 537, 1034
Kzo9I GATC 7 cut(s) 166, 361, 370, 397, 717, 847, 856
Lsp1109I GCAGC 4 cut(s) 550, 699, 792, 866
LweI GCATC 2 cut(s) 88, 751
MaeI CTAG 1 cut(s) 995
MaeIII GTNAC 3 cut(s) 52, 466, 862
MalI GATC 7 cut(s) 168, 363, 372, 399, 719, 849, 858
MboI GATC 7 cut(s) 166, 361, 370, 397, 717, 847, 856
MboII GAAGA 9 cut(s) 107, 176, 212, 222, 557, 844, 944, 950, 1049
MfeI CAATTG 2 cut(s) 792, 910
MflI RGATCY 2 cut(s) 397, 717
MlyI GAGTC 2 cut(s) 38, 278
MnlI CCTC 4 cut(s) 211, 220, 332, 922
Mph1103I ATGCAT 1 cut(s) 841
MseI TTAA 5 cut(s) 393, 480, 584, 816, 824
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 2 cut(s) 792, 910
Mva1269I GAATGC 1 cut(s) 841
MwoI GCNNNNNNNGC 2 cut(s) 811, 953
NciI CCSGG 1 cut(s) 161
NdeII GATC 7 cut(s) 166, 361, 370, 397, 717, 847, 856
NlaIII CATG 4 cut(s) 309, 336, 537, 1034
NlaIV GGNNCC 2 cut(s) 988, 1057
NmuCI GTSAC 2 cut(s) 52, 862
NsiI ATGCAT 1 cut(s) 841
PctI GAATGC 1 cut(s) 841
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 4 cut(s) 565, 689, 807, 881
PleI GAGTC 2 cut(s) 38, 277
PpsI GAGTC 2 cut(s) 38, 277
PshBI ATTAAT 1 cut(s) 824
PspFI CCCAGC 1 cut(s) 602
PspN4I GGNNCC 2 cut(s) 988, 1057
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 2 cut(s) 397, 717
RsaI GTAC 4 cut(s) 311, 376, 412, 671
RsaNI GTAC 4 cut(s) 310, 375, 411, 670
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 5 cut(s) 393, 480, 584, 816, 824
SatI GCNGC 4 cut(s) 564, 688, 806, 880
Sau3AI GATC 7 cut(s) 166, 361, 370, 397, 717, 847, 856
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 2 cut(s) 38, 278
ScrFI CCNGG 1 cut(s) 161
SfaNI GCATC 2 cut(s) 88, 751
SfcI CTRYAG 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 77, 815
SmoI CTYRAG 2 cut(s) 77, 815
SsiI CCGC 1 cut(s) 874
SspMI CTAG 1 cut(s) 995
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 4 cut(s) 156, 236, 620, 1055
TaqI TCGA 3 cut(s) 42, 442, 626
TatI WGTACW 1 cut(s) 669
Tru1I TTAA 5 cut(s) 393, 480, 584, 816, 824
Tru9I TTAA 5 cut(s) 393, 480, 584, 816, 824
TscAI CASTG 1 cut(s) 734
TseFI GTSAC 2 cut(s) 52, 862
TseI GCWGC 4 cut(s) 563, 687, 805, 879
Tsp45I GTSAC 2 cut(s) 52, 862
TspDTI ATGAA 8 cut(s) 108, 156, 219, 321, 475, 795, 951, 1050
TspRI CASTG 1 cut(s) 734
Vha464I CTTAAG 1 cut(s) 815
VspI ATTAAT 1 cut(s) 824
XapI RAATTY 3 cut(s) 350, 661, 703
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 995
ZrmI AGTACT 1 cut(s) 671
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.