Rorug04G0131600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000637
Physical Location & Seq
Reverse (-)
21087869 .. 21088216
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0131600.1

Sequence Viewer

Length: 348 bp
ATGGCGAGTCGAATCATTCTCGTGTTCACACTCGGCGCTCTGCTCCTCCTCTCCTCCCGCCCAGCTCCCTGCAAGGACACCGCCGTCGATGACGACGAGGATCTCAGCTTCCTCGAAGAGCCGACCGAGCAGGGCCACGACGCGGCGCCTCACTATCCAAATCCAGACAAATTCGACGGCGAGACCTACGATGACGCCAACGACTTCTCCGATTTTGATGAGGGCGATCATGAGGCGTACAAGGAGCCGAAGGTCGACCAGAAGGACGTCGTCGTTTTGAAGGGGGCGTACTTTAACGAGACGGTAAAGAAGAACAGCCGGAGAGAGAGAGAGAGAGTGAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

4.46

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 143
AciI CCGC 3 cut(s) 58, 81, 143
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 170
AcyI GRCGYC 3 cut(s) 146, 195, 267
AfaI GTAC 2 cut(s) 239, 290
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 280
AluBI AGCT 2 cut(s) 65, 108
AluI AGCT 2 cut(s) 65, 108
Alw26I GTCTC 2 cut(s) 176, 293
AlwI GGATC 1 cut(s) 108
AoxI GGCC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 170
AspLEI GCGC 2 cut(s) 38, 148
AspS9I GGNCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 145
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BauI CACGAG 1 cut(s) 20
BceAI ACGGC 2 cut(s) 68, 193
BcoDI GTCTC 2 cut(s) 176, 293
BfoI RGCGCY 2 cut(s) 39, 149
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 147, 246
BsaHI GRCGYC 3 cut(s) 146, 195, 267
BsaI GGTCTC 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 118
BseRI GAGGAG 3 cut(s) 35, 38, 43
BseYI CCCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 176, 293
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 100, 226
BspACI CCGC 3 cut(s) 58, 81, 143
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 147, 246
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 176
BssMI GATC 2 cut(s) 100, 226
BssNI GRCGYC 3 cut(s) 146, 195, 267
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 3 cut(s) 146, 195, 267
BstDEI CTNAG 1 cut(s) 104
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 2 cut(s) 39, 149
BstHHI GCGC 2 cut(s) 38, 148
BstKTI GATC 2 cut(s) 103, 229
BstMAI GTCTC 2 cut(s) 176, 293
BstMBI GATC 2 cut(s) 100, 226
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstUI CGCG 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 135
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 38, 148
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 2 cut(s) 149, 203
Csp6I GTAC 2 cut(s) 238, 289
CviAII CATG 1 cut(s) 230
CviJI RGCY 6 cut(s) 65, 108, 121, 135, 247, 318
CviKI_1 RGCY 6 cut(s) 65, 108, 121, 135, 247, 318
CviQI GTAC 2 cut(s) 238, 289
DdeI CTNAG 1 cut(s) 104
DinI GGCGCC 1 cut(s) 147
DpnI GATC 2 cut(s) 102, 228
DpnII GATC 2 cut(s) 100, 226
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 147
EheI GGCGCC 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 1 cut(s) 233
FaiI YATR 1 cut(s) 231
FatI CATG 1 cut(s) 229
FauI CCCGC 1 cut(s) 65
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
GlaI GCGC 2 cut(s) 37, 147
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 65
HaeII RGCGCY 2 cut(s) 39, 149
HaeIII GGCC 1 cut(s) 135
HapII CCGG 1 cut(s) 319
HgaI GACGC 2 cut(s) 149, 203
HhaI GCGC 2 cut(s) 38, 148
Hin1I GRCGYC 3 cut(s) 146, 195, 267
Hin1II CATG 1 cut(s) 233
Hin6I GCGC 2 cut(s) 36, 146
HinP1I GCGC 2 cut(s) 36, 146
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 7, 12
HpaII CCGG 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 27, 256
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 164, 230
Hpy8I GTNNAC 2 cut(s) 27, 256
Hpy99I CGWCG 6 cut(s) 89, 98, 143, 179, 272, 275
HpyAV CCTTC 3 cut(s) 244, 256, 274
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 3 cut(s) 146, 195, 267
Hsp92II CATG 1 cut(s) 233
HspAI GCGC 2 cut(s) 36, 146
KasI GGCGCC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 100, 226
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 3 cut(s) 48, 70, 244
LpnPI CCDG 6 cut(s) 75, 82, 116, 177, 272, 332
MaeII ACGT 1 cut(s) 267
MalI GATC 2 cut(s) 102, 228
MboI GATC 2 cut(s) 100, 226
MboII GAAGA 2 cut(s) 128, 322
MflI RGATCY 1 cut(s) 100
MluCI AATT 1 cut(s) 170
Mly113I GGCGCC 1 cut(s) 146
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 8 cut(s) 56, 59, 64, 91, 122, 159, 214, 226
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 319
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 127
NarI GGCGCC 1 cut(s) 146
NdeII GATC 2 cut(s) 100, 226
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 2 cut(s) 147, 246
NmeAIII GCCGAG 1 cut(s) 12
PagI TCATGA 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 207
PfeI GAWTC 1 cut(s) 12
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 15
PluTI GGCGCC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 147, 246
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 2 cut(s) 239, 290
RsaNI GTAC 2 cut(s) 238, 289
RseI CAYNNNNRTG 1 cut(s) 20
SalI GTCGAC 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 100, 226
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 16
SetI ASST 5 cut(s) 67, 110, 188, 255, 270
SfoI GGCGCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 1 cut(s) 170
SsiI CCGC 3 cut(s) 58, 81, 143
SspDI GGCGCC 1 cut(s) 145
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 270
TaqI TCGA 5 cut(s) 10, 87, 114, 174, 255
TaqII GACCGA 1 cut(s) 140
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
Tth111I GACNNNGTC 1 cut(s) 269
XapI RAATTY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 255
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.