Rh4CG202100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000637
Physical Location & Seq
Forward (+)
42825738 .. 42828590
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG202100.1

Sequence Viewer

Length: 933 bp
ATGGATCAACGAAGATGGGAGGACTTAGATAAGGACTGTTTGGTGAAAGTGTTTGAGAAAGTTGATATGGAGTCGCTACTCTTGGATATTCCTTTTGTGTGCAAGTCATGGCACAAAGAAACACTAAATCCTTCTTGCTGGAAAAGTCTTATCTTTCCGGAATTCGAACCTGGATTTCCTTATGAATTTGATTATCCAATCCATGAAAGATTTGTTTCTGAATTTGGCCTTGATAGGAATCGTGTCTCAGAAACTGCCTTTATAAAGTTTGTTGTCAATCGTAGCCAAGGAAAGGCTGTTTTTCTCAAGCTACCTGGATGCTCTACCGTAGAAGCCTTTGAATATGTTGCAGATGCGTGCCCTAACCTTGTGATTTTGGGTTTCCCAAGATGTTTGTTGTGGAAAAAAGACATCAATCTCGAATCGATTGGCAAGTTCAAGTACTTGTATGTGTTGTCATTGGGCAGCTGCGATAAATTGAACAGAGTTCTTGCAGTAGTCAGCAAACGGTGCAAGTTGTTTTCTTATTTAACACTGTCTAATGCCCAAATTGGTAAAGAAGAGGTTATGGCAATTGTCAACTTAGTCCCTGATATTAAGGGCCTGAGCTTGAGTAGGGCACAAATCGATCGGGATAATCTTATCATATTACTGAAGGGTTGCAAAAAACTTTCGTTCTTGGAGGCCAAGGATTGCATTGGTTTCAATGAGGGTGATGATGAAATAGCAGAGCTGGCTTCTCATATCAGTAAATTTCGCTGTGAAGGATCTAAAGAGCGCATTGAATTTCCATTTGATTTTTCTGAATTTGATGAAGAATCAATAACGGAAGATGCTATCATAAAAATTGCTTCAATGTTTGCAGAGGTTGATGTAGAGGCAGAGGTTGATGGCGAGGGAGAGGGTGATATTGAAGAAAGTGTTGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

310

Amino Acids

35.32

Weight (kDa)

4.71

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AccIII TCCGGA 1 cut(s) 157
AclWI GGATC 2 cut(s) 12, 775
AcsI RAATTY 6 cut(s) 161, 185, 221, 752, 785, 806
AcuI CTGAAG 1 cut(s) 674
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 8 cut(s) 341, 439, 481, 706, 785, 855, 914, 926
AjnI CCWGG 2 cut(s) 169, 313
AluBI AGCT 4 cut(s) 310, 468, 609, 733
AluI AGCT 4 cut(s) 310, 468, 609, 733
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 12, 775
AlwNI CAGNNNCTG 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 157
AoxI GGCC 3 cut(s) 226, 601, 684
ApeKI GCWGC 2 cut(s) 465, 468
ApoI RAATTY 6 cut(s) 161, 185, 221, 752, 785, 806
AspLEI GCGC 1 cut(s) 780
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 3 cut(s) 55, 725, 917
AsuII TTCGAA 1 cut(s) 165
BaeGI GKGCMC 2 cut(s) 362, 622
BbvI GCAGC 2 cut(s) 455, 477
BccI CCATC 2 cut(s) 9, 884
BciT130I CCWGG 2 cut(s) 171, 315
BcoDI GTCTC 1 cut(s) 250
BisI GCNGC 2 cut(s) 466, 469
BlsI GCNGC 2 cut(s) 467, 470
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 171, 315
BmgT120I GGNCC 1 cut(s) 601
BmrFI CCNGG 2 cut(s) 171, 315
BmsI GCATC 3 cut(s) 308, 343, 823
Bpu10I CCTNAGC 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 290, 631
Bsa29I ATCGAT 2 cut(s) 425, 627
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 286, 687
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 157
BseBI CCWGG 2 cut(s) 171, 315
BseCI ATCGAT 2 cut(s) 425, 627
BseDI CCNNGG 2 cut(s) 286, 687
BseGI GGATG 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 261, 596
BseSI GKGCMC 2 cut(s) 362, 622
BseXI GCAGC 2 cut(s) 455, 477
Bsh1285I CGRYCG 1 cut(s) 631
BshFI GGCC 3 cut(s) 228, 603, 686
BshVI ATCGAT 2 cut(s) 425, 627
BsiEI CGRYCG 1 cut(s) 631
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 3 cut(s) 228, 603, 686
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 362, 622
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 3 cut(s) 4, 628, 767
BspANI GGCC 3 cut(s) 228, 603, 686
BspCNI CTCAG 2 cut(s) 260, 597
BspDI ATCGAT 2 cut(s) 425, 627
BspEI TCCGGA 1 cut(s) 157
BspPI GGATC 2 cut(s) 12, 775
BspT104I TTCGAA 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 286, 687
BssMI GATC 3 cut(s) 4, 628, 767
BssT1I CCWWGG 2 cut(s) 286, 687
Bst2UI CCWGG 2 cut(s) 171, 315
Bst4CI ACNGT 4 cut(s) 38, 328, 510, 537
Bst6I CTCTTC 1 cut(s) 555
BstAPI GCANNNNNTGC 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 358, 735
BstDEI CTNAG 4 cut(s) 25, 247, 583, 605
BstF5I GGATG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 780
BstKTI GATC 3 cut(s) 7, 631, 770
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 4, 628, 767
BstMCI CGRYCG 1 cut(s) 631
BstMWI GCNNNNNNNGC 2 cut(s) 510, 734
BstNI CCWGG 2 cut(s) 171, 315
BstSCI CCNGG 2 cut(s) 169, 313
BstSLI GKGCMC 2 cut(s) 362, 622
BstV1I GCAGC 2 cut(s) 455, 477
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
Bsu15I ATCGAT 2 cut(s) 425, 627
BsuRI GGCC 3 cut(s) 228, 603, 686
BsuTUI ATCGAT 2 cut(s) 425, 627
BtsCI GGATG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 2 cut(s) 358, 735
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 780
Cfr13I GGNCC 1 cut(s) 601
ClaI ATCGAT 2 cut(s) 425, 627
Csp6I GTAC 1 cut(s) 442
CviAII CATG 2 cut(s) 108, 203
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 4 cut(s) 25, 247, 583, 605
DpnI GATC 3 cut(s) 6, 630, 769
DpnII GATC 3 cut(s) 4, 628, 767
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 2 cut(s) 286, 687
Eco57I CTGAAG 1 cut(s) 674
EcoO109I RGGNCCY 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 169, 313
EcoT14I CCWWGG 2 cut(s) 286, 687
ErhI CCWWGG 2 cut(s) 286, 687
FaeI CATG 2 cut(s) 111, 206
FaqI GGGAC 1 cut(s) 572
FatI CATG 2 cut(s) 107, 202
Fnu4HI GCNGC 2 cut(s) 466, 469
FokI GGATG 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 466, 469
GlaI GCGC 1 cut(s) 779
GluI GCNGC 2 cut(s) 466, 469
HaeIII GGCC 3 cut(s) 228, 603, 686
HapII CCGG 1 cut(s) 158
HhaI GCGC 1 cut(s) 780
Hin1II CATG 2 cut(s) 111, 206
Hin6I GCGC 1 cut(s) 778
HinP1I GCGC 1 cut(s) 778
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 4 cut(s) 71, 238, 422, 818
HpaII CCGG 1 cut(s) 158
HphI GGTGA 3 cut(s) 55, 725, 917
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 3 cut(s) 220, 250, 805
Hpy188III TCNNGA 3 cut(s) 158, 419, 632
Hpy8I GTNNAC 1 cut(s) 580
HpyAV CCTTC 3 cut(s) 141, 649, 758
HpyCH4III ACNGT 4 cut(s) 38, 328, 510, 537
HpyCH4V TGCA 7 cut(s) 102, 350, 494, 513, 663, 696, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 510, 734
HpyF3I CTNAG 4 cut(s) 25, 247, 583, 605
Hsp92II CATG 2 cut(s) 111, 206
HspAI GCGC 1 cut(s) 778
Kpn2I TCCGGA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 4, 628, 767
LpnPI CCDG 9 cut(s) 124, 156, 171, 183, 300, 327, 603, 617, 719
Lsp1109I GCAGC 2 cut(s) 455, 477
LweI GCATC 3 cut(s) 308, 343, 823
MalI GATC 3 cut(s) 6, 630, 769
MboI GATC 3 cut(s) 4, 628, 767
MboII GAAGA 5 cut(s) 24, 572, 827, 842, 926
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 2 cut(s) 362, 622
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 9 cut(s) 13, 556, 676, 703, 859, 871, 877, 889, 895
MroI TCCGGA 1 cut(s) 157
MseI TTAA 2 cut(s) 530, 597
MspA1I CMGCKG 1 cut(s) 468
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 171, 315
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 2 cut(s) 171, 315
MwoI GCNNNNNNNGC 2 cut(s) 510, 734
NdeII GATC 3 cut(s) 4, 628, 767
NlaIII CATG 2 cut(s) 111, 206
NspV TTCGAA 1 cut(s) 165
PfeI GAWTC 3 cut(s) 238, 422, 818
PkrI GCNGC 2 cut(s) 467, 470
Ple19I CGATCG 1 cut(s) 631
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PsiI TTATAA 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 169, 313
PspGI CCWGG 2 cut(s) 169, 313
PspPI GGNCC 1 cut(s) 601
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 767
PvuI CGATCG 1 cut(s) 631
PvuII CAGCTG 1 cut(s) 468
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 2 cut(s) 530, 597
SatI GCNGC 2 cut(s) 466, 469
Sau3AI GATC 3 cut(s) 4, 628, 767
Sau96I GGNCC 1 cut(s) 601
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 171, 315
SduI GDGCHC 2 cut(s) 362, 622
SfaNI GCATC 3 cut(s) 308, 343, 823
SfuI TTCGAA 1 cut(s) 165
SmlI CTYRAG 2 cut(s) 305, 610
SmoI CTYRAG 2 cut(s) 305, 610
StyD4I CCNGG 2 cut(s) 169, 313
StyI CCWWGG 2 cut(s) 286, 687
TaaI ACNGT 4 cut(s) 38, 328, 510, 537
TaqI TCGA 4 cut(s) 165, 420, 425, 627
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 3 cut(s) 238, 422, 818
Tru1I TTAA 2 cut(s) 530, 597
Tru9I TTAA 2 cut(s) 530, 597
TscAI CASTG 1 cut(s) 540
TseI GCWGC 2 cut(s) 465, 468
TspDTI ATGAA 4 cut(s) 198, 219, 735, 828
TspGWI ACGGA 1 cut(s) 842
TspRI CASTG 1 cut(s) 540
XapI RAATTY 6 cut(s) 161, 185, 221, 752, 785, 806
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.