RLG00000008140

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000637
Physical Location & Seq
Reverse (-)
26174019 .. 26175655
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008140

Sequence Viewer

Length: 1020 bp
ATGTTCGTAGGTGAAAGCATTTTCTTTAGTGATGGGTTTGTCGACTCGCTTGTGACAGTTCTTTTGCCCTATTGGCTTGAGATACCAATAAATGAAGATGCTGGTAAAACTTCATATATATTGGATGATTTTCCAAGCACAGAAGCACAAAAACCGTTCCGGGAAGATCACCGAGCACAAAATACTTGTTACAAGATGGAAGATGAACGAAAATGGGAGGAATTAGAGGTTGACTGTTTGATGAATATATTTGGAAGAGTGGGAATGGAGACATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGGTACAAAGCAACCCTCGACCCCTCATGCTGGCAATATCTCATATTTCCTGATCTTACTGTTGATCGTTATCTTCACTTTGATGAAGACGGATATTGGTGTACCCTTATTAAAAGATTTGTAGATGAGTATCGACTTGAAGAGAGCCGTTTCTCGGTGACTGCATTTGTTAAGTTTATAATCAGTCGTAGCAAAGGAAAGGCTATTTATCTCAGGCTATCTTCATGTGCTTCAGAAGATGTCTTGAAATATGCTGTAGATGAGTGTCCTTCCTTAAAGCTTCTTTCATTGCGTGGCCGTTTAGTGAACCGTAATGCAAGCATAATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCTATAATTTGGAAAACTTCCTTGGACAGATCTCCATTTACTGCAAGAACTTGTGTCTTTTGAATGTGGCTAATGCAAATATTGGTAAAGATGAAGCAATGGCAATTGTTAACTTGCTGCCTAAGCTTAAGCAATTGATCTTGAAGAAAGCAAATATTGATCGGGATGATCTTGTGACGCTACTGCGGGGCTGCAACGAGCTTGTGCTTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTAATTTCAGCTCTCAGGGTTCTACACTATATGATGATGATGATGATGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

340

Amino Acids

38.94

Weight (kDa)

4.58

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 871
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 3 cut(s) 311, 409, 668
AfiI CCNNNNNNNGG 2 cut(s) 336, 460
AflII CTTAAG 1 cut(s) 812
AgsI TTSAA 5 cut(s) 446, 553, 635, 748, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 690, 722
AluBI AGCT 6 cut(s) 586, 687, 811, 886, 949, 975
AluI AGCT 6 cut(s) 586, 687, 811, 886, 949, 975
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 3 cut(s) 684, 802, 876
ApoI RAATTY 1 cut(s) 658
ArsI GACNNNNNNTTYG 4 cut(s) 46, 78, 262, 294
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 23, 161, 475
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 696, 789, 863
BccI CCATC 2 cut(s) 26, 190
BceAI ACGGC 2 cut(s) 438, 588
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 561
BfrI CTTAAG 1 cut(s) 812
BglI GCCNNNNNGGC 1 cut(s) 73
BglII AGATCT 1 cut(s) 714
BisI GCNGC 3 cut(s) 685, 803, 877
BlsI GCNGC 3 cut(s) 686, 804, 878
BmcAI AGTACT 1 cut(s) 668
Bme1390I CCNGG 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 807
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 161
BsaBI GATNNNNATC 2 cut(s) 375, 435
BsaJI CCNNGG 1 cut(s) 706
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 460
Bse3DI GCAATG 3 cut(s) 272, 593, 789
Bse8I GATNNNNATC 2 cut(s) 375, 435
BseDI CCNNGG 1 cut(s) 706
BseGI GGATG 4 cut(s) 130, 289, 856, 904
BseJI GATNNNNATC 2 cut(s) 375, 435
BseLI CCNNNNNNNGG 2 cut(s) 336, 460
BseMI GCAATG 3 cut(s) 272, 593, 789
BseMII CTCAG 2 cut(s) 532, 992
BseXI GCAGC 3 cut(s) 696, 789, 863
BshFI GGCC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 336, 460
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 7 cut(s) 166, 358, 370, 714, 822, 844, 853
BspACI CCGC 1 cut(s) 871
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 2 cut(s) 531, 991
BspTI CTTAAG 1 cut(s) 812
BsrDI GCAATG 3 cut(s) 272, 593, 789
BssECI CCNNGG 1 cut(s) 706
BssMI GATC 7 cut(s) 166, 358, 370, 714, 822, 844, 853
BssT1I CCWWGG 1 cut(s) 706
Bst4CI ACNGT 5 cut(s) 58, 156, 236, 367, 617
Bst6I CTCTTC 2 cut(s) 250, 441
BstAFI CTTAAG 1 cut(s) 812
BstAPI GCANNNNNTGC 1 cut(s) 950
BstC8I GCNNGC 3 cut(s) 338, 625, 951
BstDEI CTNAG 3 cut(s) 518, 807, 978
BstF5I GGATG 4 cut(s) 130, 289, 856, 904
BstKTI GATC 7 cut(s) 169, 361, 373, 717, 825, 847, 856
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 7 cut(s) 166, 358, 370, 714, 822, 844, 853
BstMWI GCNNNNNNNGC 3 cut(s) 73, 808, 950
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 696, 789, 863
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 4 cut(s) 130, 289, 856, 904
Cac8I GCNNGC 3 cut(s) 338, 625, 951
CseI GACGC 1 cut(s) 871
Csp6I GTAC 3 cut(s) 310, 408, 667
CviAII CATG 3 cut(s) 306, 333, 531
CviQI GTAC 3 cut(s) 310, 408, 667
DdeI CTNAG 3 cut(s) 518, 807, 978
DpnI GATC 7 cut(s) 168, 360, 372, 716, 824, 846, 855
DpnII GATC 7 cut(s) 166, 358, 370, 714, 822, 844, 853
EaeI YGGCCR 1 cut(s) 601
Eam1104I CTCTTC 2 cut(s) 250, 441
EarI CTCTTC 2 cut(s) 250, 441
Eco130I CCWWGG 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 706
FaeI CATG 3 cut(s) 309, 336, 534
FaqI GGGAC 1 cut(s) 272
FatI CATG 3 cut(s) 305, 332, 530
FauI CCCGC 1 cut(s) 864
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 685, 803, 877
FokI GGATG 4 cut(s) 137, 296, 863, 911
Fsp4HI GCNGC 3 cut(s) 685, 803, 877
GluI GCNGC 3 cut(s) 685, 803, 877
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 160
HgaI GACGC 1 cut(s) 871
Hin1II CATG 3 cut(s) 309, 336, 534
HincII GTYRAC 3 cut(s) 43, 232, 796
HindII GTYRAC 3 cut(s) 43, 232, 796
HindIII AAGCTT 3 cut(s) 584, 809, 947
HinfI GANTC 1 cut(s) 44
HpaI GTTAAC 1 cut(s) 796
HpaII CCGG 1 cut(s) 160
HphI GGTGA 3 cut(s) 23, 161, 475
Hpy166II GTNNAC 6 cut(s) 43, 232, 408, 613, 654, 796
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 5 cut(s) 356, 550, 635, 826, 848
Hpy8I GTNNAC 6 cut(s) 43, 232, 408, 613, 654, 796
HpyAV CCTTC 1 cut(s) 585
HpyCH4III ACNGT 5 cut(s) 58, 156, 236, 367, 617
HpyCH4V TGCA 6 cut(s) 300, 470, 623, 729, 761, 879
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 808, 950
HpyF3I CTNAG 3 cut(s) 518, 807, 978
Hsp92II CATG 3 cut(s) 309, 336, 534
KspAI GTTAAC 1 cut(s) 796
Kzo9I GATC 7 cut(s) 166, 358, 370, 714, 822, 844, 853
LpnPI CCDG 6 cut(s) 87, 173, 322, 369, 505, 965
Lsp1109I GCAGC 3 cut(s) 696, 789, 863
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 4 cut(s) 52, 188, 463, 859
MalI GATC 7 cut(s) 168, 360, 372, 716, 824, 846, 855
MboI GATC 7 cut(s) 166, 358, 370, 714, 822, 844, 853
MfeI CAATTG 3 cut(s) 789, 818, 907
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 9 cut(s) 221, 630, 642, 658, 691, 789, 818, 907, 967
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 5 cut(s) 211, 220, 332, 340, 919
MseI TTAA 5 cut(s) 417, 477, 581, 795, 813
MslI CAYNNNNRTG 1 cut(s) 387
MspCI CTTAAG 1 cut(s) 812
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 3 cut(s) 789, 818, 907
MwoI GCNNNNNNNGC 3 cut(s) 73, 808, 950
NciI CCSGG 1 cut(s) 161
NdeII GATC 7 cut(s) 166, 358, 370, 714, 822, 844, 853
NlaIII CATG 3 cut(s) 309, 336, 534
NmuCI GTSAC 3 cut(s) 52, 463, 859
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 3 cut(s) 686, 804, 878
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PsiI TTATAA 1 cut(s) 485
PsuI RGATCY 1 cut(s) 714
RsaI GTAC 3 cut(s) 311, 409, 668
RsaNI GTAC 3 cut(s) 310, 408, 667
RseI CAYNNNNRTG 1 cut(s) 387
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 5 cut(s) 417, 477, 581, 795, 813
SatI GCNGC 3 cut(s) 685, 803, 877
Sau3AI GATC 7 cut(s) 166, 358, 370, 714, 822, 844, 853
ScaI AGTACT 1 cut(s) 668
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 178
SetI ASST 9 cut(s) 13, 231, 588, 689, 813, 888, 919, 951, 977
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 561
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 2 cut(s) 77, 812
SmoI CTYRAG 2 cut(s) 77, 812
Sse9I AATT 9 cut(s) 221, 630, 642, 658, 691, 789, 818, 907, 967
SsiI CCGC 1 cut(s) 871
SspI AATATT 2 cut(s) 766, 841
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 5 cut(s) 58, 156, 236, 367, 617
TaqI TCGA 3 cut(s) 42, 324, 439
TasI AATT 9 cut(s) 221, 630, 642, 658, 691, 789, 818, 907, 967
TatI WGTACW 1 cut(s) 666
Tru1I TTAA 5 cut(s) 417, 477, 581, 795, 813
Tru9I TTAA 5 cut(s) 417, 477, 581, 795, 813
TseFI GTSAC 3 cut(s) 52, 463, 859
TseI GCWGC 3 cut(s) 684, 802, 876
Tsp45I GTSAC 3 cut(s) 52, 463, 859
TspDTI ATGAA 9 cut(s) 102, 108, 219, 257, 405, 519, 582, 792, 948
TspGWI ACGGA 1 cut(s) 411
Vha464I CTTAAG 1 cut(s) 812
XapI RAATTY 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.