FvH4_4g13861

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000637
Physical Location & Seq
Forward (+)
17375132 .. 17379197
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13861.t1

Sequence Viewer

Length: 810 bp
ATGGCTCAACGAAGATGGGAGGAGTTAGATAGTGACTGCTTAACAAATGTTTTTGGAAGAGTTGGGATGGAGTCACTTCTTGTGGACATCCCTTTTGTCTGTAAGTCATGGCATAAAGCAAGCCATGATCCTTCATGCTGGCTCAGTATTGATTTTCCAAATGTAGACTACTATCTATCTGTTCCTGTTCTTTTGATAAGATTTGAACATAACTATAAAACAAAGGAATGGCCGGCATGGAGTCGTGTTTTCCTCAATGGCCTTGTGAAAATTGTAATTGAGCGCAGCAAGGGAAAAGCTACGTGTTTAAAGTTACCTGGGTGGTGTTCGAAGGAAGCATTGAAACTTGTTGCACCGGAGTGGCCTCACCTGAAATCTGTAGGTTTGCATGATGATTTGGTACGTTTGCATTATGGAAAAATTCCAGATATGATTAGAAATTGGAGAAATTTGGAGGAGTTGCCCTTGGGAGCTACTGATAAGAATCTTGAGCAAATTCTGGAACAGGTGAGCCTCCACTGCAAGAAGTTATACAGTTTATGTTTGTCTAATACACAAACCTCCTCTATTCATGGAGACACAGCAAGGTCAATTGTTAGCTTCCTTCCTAATATTAAGCACTTAACCTTGAGGAACTGTGGCGTGCTTCGTCCTGAAGATCTTGTCACTATAATACGGGGCTGCAAGGACCTAGTTTATTTGGATGTCACGAACTCTAGTACACTTTTGGTTGGTGATGAACAATTAGCCAAGCTTGCTTCTCATATTGGTATACTGTGTTGTTTGATAGATCGAATGTTGCATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

270

Amino Acids

30.65

Weight (kDa)

7.99

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 165, 772
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 3 cut(s) 420, 448, 495
AcuI CTGAAG 1 cut(s) 675
AfaI GTAC 2 cut(s) 402, 721
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 2 cut(s) 206, 343
AjnI CCWGG 1 cut(s) 316
AleI CACNNNNGTG 1 cut(s) 358
AluBI AGCT 4 cut(s) 299, 473, 600, 754
AluI AGCT 4 cut(s) 299, 473, 600, 754
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 1 cut(s) 122
AoxI GGCC 3 cut(s) 230, 259, 362
ApeKI GCWGC 2 cut(s) 285, 681
ApoI RAATTY 3 cut(s) 420, 448, 495
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 688
AsuHPI GGTGA 3 cut(s) 359, 520, 746
AsuII TTCGAA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 688
BbvI GCAGC 2 cut(s) 297, 668
BccI CCATC 2 cut(s) 9, 61
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 2 cut(s) 692, 717
BfmI CTRYAG 1 cut(s) 378
BglII AGATCT 1 cut(s) 658
BisI GCNGC 2 cut(s) 286, 682
BlsI GCNGC 2 cut(s) 287, 683
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 688
BmgT120I GGNCC 1 cut(s) 688
BmrFI CCNGG 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 509, 649
BsaAI YACGTR 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 317, 465
BsaWI WCCGGW 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 317, 465
BseGI GGATG 3 cut(s) 72, 87, 709
BseJI GATNNNNATC 1 cut(s) 483
BseMII CTCAG 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 35, 470, 553
BseXI GCAGC 2 cut(s) 297, 668
BshFI GGCC 3 cut(s) 232, 261, 364
BsiSI CCGG 2 cut(s) 233, 356
BsmAI GTCTC 1 cut(s) 570
BsnI GGCC 3 cut(s) 232, 261, 364
Bsp119I TTCGAA 1 cut(s) 329
Bsp143I GATC 3 cut(s) 127, 658, 790
BspANI GGCC 3 cut(s) 232, 261, 364
BspCNI CTCAG 1 cut(s) 156
BspPI GGATC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 317, 465
BssMI GATC 3 cut(s) 127, 658, 790
BssNAI GTATAC 1 cut(s) 773
BssT1I CCWWGG 1 cut(s) 465
Bst1107I GTATAC 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 536, 638, 777
Bst6I CTCTTC 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 329
BstC8I GCNNGC 5 cut(s) 121, 140, 234, 644, 756
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 72, 87, 709
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 3 cut(s) 130, 661, 793
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 3 cut(s) 127, 658, 790
BstMWI GCNNNNNNNGC 2 cut(s) 519, 755
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 297, 668
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BstZ17I GTATAC 1 cut(s) 773
BsuRI GGCC 3 cut(s) 232, 261, 364
BtsCI GGATG 3 cut(s) 72, 87, 709
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 5 cut(s) 121, 140, 234, 644, 756
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 688
Csp6I GTAC 2 cut(s) 401, 720
CviAII CATG 6 cut(s) 108, 125, 135, 237, 389, 572
CviQI GTAC 2 cut(s) 401, 720
DdeI CTNAG 1 cut(s) 143
DpnI GATC 3 cut(s) 129, 660, 792
DpnII GATC 3 cut(s) 127, 658, 790
DraI TTTAAA 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 6 cut(s) 111, 128, 138, 240, 392, 575
FatI CATG 6 cut(s) 107, 124, 134, 236, 388, 571
FblI GTMKAC 2 cut(s) 165, 772
Fnu4HI GCNGC 2 cut(s) 286, 682
FokI GGATG 3 cut(s) 74, 79, 716
Fsp4HI GCNGC 2 cut(s) 286, 682
FspBI CTAG 2 cut(s) 692, 717
GlaI GCGC 1 cut(s) 284
GluI GCNGC 2 cut(s) 286, 682
HaeIII GGCC 3 cut(s) 232, 261, 364
HapII CCGG 2 cut(s) 233, 356
HhaI GCGC 1 cut(s) 285
Hin1II CATG 6 cut(s) 111, 128, 138, 240, 392, 575
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 3 cut(s) 71, 241, 484
HpaII CCGG 2 cut(s) 233, 356
HphI GGTGA 3 cut(s) 359, 520, 746
Hpy166II GTNNAC 4 cut(s) 85, 166, 722, 773
Hpy188III TCNNGA 5 cut(s) 425, 488, 500, 653, 709
Hpy8I GTNNAC 4 cut(s) 85, 166, 722, 773
HpyAV CCTTC 3 cut(s) 141, 325, 614
HpyCH4III ACNGT 3 cut(s) 536, 638, 777
HpyCH4IV ACGT 2 cut(s) 302, 403
HpyCH4V TGCA 6 cut(s) 353, 388, 409, 522, 684, 802
HpyF10VI GCNNNNNNNGC 2 cut(s) 519, 755
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 2 cut(s) 302, 403
Hsp92II CATG 6 cut(s) 111, 128, 138, 240, 392, 575
HspAI GCGC 1 cut(s) 283
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 127, 658, 790
LmnI GCTCC 1 cut(s) 470
Lsp1109I GCAGC 2 cut(s) 297, 668
MaeI CTAG 2 cut(s) 692, 717
MaeII ACGT 2 cut(s) 302, 403
MaeIII GTNAC 5 cut(s) 32, 72, 312, 664, 706
MalI GATC 3 cut(s) 129, 660, 792
MboI GATC 3 cut(s) 127, 658, 790
MboII GAAGA 3 cut(s) 24, 69, 668
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 658
MluCI AATT 8 cut(s) 270, 276, 420, 439, 448, 495, 591, 743
MlyI GAGTC 2 cut(s) 80, 250
MnlI CCTC 8 cut(s) 13, 263, 375, 448, 524, 571, 574, 624
MroNI GCCGGC 1 cut(s) 232
MseI TTAA 5 cut(s) 41, 308, 615, 623, 808
MslI CAYNNNNRTG 1 cut(s) 358
MspI CCGG 2 cut(s) 233, 356
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 519, 755
NaeI GCCGGC 1 cut(s) 234
NdeII GATC 3 cut(s) 127, 658, 790
NgoMIV GCCGGC 1 cut(s) 232
NlaIII CATG 6 cut(s) 111, 128, 138, 240, 392, 575
NmuCI GTSAC 4 cut(s) 32, 72, 664, 706
NspV TTCGAA 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 358
PdiI GCCGGC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 484
PkrI GCNGC 2 cut(s) 287, 683
PleI GAGTC 2 cut(s) 79, 249
PpsI GAGTC 2 cut(s) 79, 249
Ppu21I YACGTR 1 cut(s) 303
PpuMI RGGWCCY 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspPI GGNCC 1 cut(s) 688
PspPPI RGGWCCY 1 cut(s) 688
PsuI RGATCY 1 cut(s) 658
RsaI GTAC 2 cut(s) 402, 721
RsaNI GTAC 2 cut(s) 401, 720
RseI CAYNNNNRTG 1 cut(s) 358
SaqAI TTAA 5 cut(s) 41, 308, 615, 623, 808
SatI GCNGC 2 cut(s) 286, 682
Sau3AI GATC 3 cut(s) 127, 658, 790
Sau96I GGNCC 1 cut(s) 688
SchI GAGTC 2 cut(s) 80, 250
ScrFI CCNGG 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 329
SinI GGWCC 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 2 cut(s) 488, 628
SmoI CTYRAG 2 cut(s) 488, 628
Sse9I AATT 8 cut(s) 270, 276, 420, 439, 448, 495, 591, 743
SspI AATATT 1 cut(s) 613
SspMI CTAG 2 cut(s) 692, 717
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 3 cut(s) 536, 638, 777
TaiI ACGT 2 cut(s) 305, 406
TaqI TCGA 2 cut(s) 329, 793
TasI AATT 8 cut(s) 270, 276, 420, 439, 448, 495, 591, 743
TatI WGTACW 1 cut(s) 719
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 5 cut(s) 41, 308, 615, 623, 808
Tru9I TTAA 5 cut(s) 41, 308, 615, 623, 808
TscAI CASTG 1 cut(s) 524
TseFI GTSAC 4 cut(s) 32, 72, 664, 706
TseI GCWGC 2 cut(s) 285, 681
Tsp45I GTSAC 4 cut(s) 32, 72, 664, 706
TspDTI ATGAA 3 cut(s) 123, 560, 753
TspRI CASTG 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 3 cut(s) 420, 448, 495
XmiI GTMKAC 2 cut(s) 165, 772
XspI CTAG 2 cut(s) 692, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.