Rmu_sc0011778.1_g000017

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011778.1
OG0000637
Physical Location & Seq
Reverse (-)
66947 .. 70167
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011778.1_g000017.1.cds

Sequence Viewer

Length: 1002 bp
atggagtcatcgcttttggatgtccctttcgtatgcaagtcatggtacaaagcaaccctcgacccctcatgctggcaatatctcatatttcctgatcttactgttgatcgttatcttgactttgatgaagacggatattggtgtacccttattaaaagatttgtagatgagcatcgacttgaagagagccgtttctcggtgactgcatttgttaagtttataatcagtcgtagcaaaggaaaggctatttatctcaggctatcttcatgtgcttcagaagatgtcttgaaatatgctgcagatgagtgtccttccttaaggcttctttcattgcccagccgtttagtgaaccgtaatgcaagcataattcaagaaataattggaaagtggacaaatttggagtacttggtattgggaagcagctataatttggaaaacttccttggacagatctccatttactgcaagaacttgtgtcttttgaatgtggctaatgcaaatattggtaaagatgaagcaatggcaattgttaacttgctgcctaagcttaagcaattgatcttgaagaaagcaaatattgatcgggatgatcttgtgacgctactgcggggctgcaacgagcttgtgcttttggatgtcagcaattgtataggttttgatgaggaagatgaagaaatagcaaagcttgcttctcatattgctaatttcagctctcagggttctacactatatgatgatgatgattactatgagggacatatttcctgggatgaagatatttatggatacggttccgattgttcaagtatcatgggtggtgaagaaagttccaagcagattttgacttctgacgtgcagaaggtggaggtatctgtgaatcaagaatcttcaggaggggagatttgggggtgccaagttgaatggcatgaattatcgtacttggaggaagaagatgactgctcatttttgcggtctggacaagatgggatatgtgaggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

333

Amino Acids

37.71

Weight (kDa)

4.39

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 909
AciI CCGC 2 cut(s) 607, 970
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 2 cut(s) 258, 873
AfaI GTAC 4 cut(s) 47, 145, 404, 938
AfiI CCNNNNNNNGG 2 cut(s) 72, 196
AflII CTTAAG 2 cut(s) 316, 548
AgsI TTSAA 7 cut(s) 182, 289, 371, 484, 565, 804, 920
AjiI CACGTC 1 cut(s) 853
AjnI CCWGG 1 cut(s) 764
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AluBI AGCT 5 cut(s) 423, 547, 622, 685, 711
AluI AGCT 5 cut(s) 423, 547, 622, 685, 711
ApeKI GCWGC 4 cut(s) 296, 420, 538, 612
ApoI RAATTY 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 211, 830
BanI GGYRCC 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 4 cut(s) 283, 432, 525, 599
BccI CCATC 1 cut(s) 977
BceAI ACGGC 2 cut(s) 174, 324
BciT130I CCWGG 1 cut(s) 766
BciVI GTATCC 1 cut(s) 779
BfmI CTRYAG 1 cut(s) 297
BfrI CTTAAG 2 cut(s) 316, 548
BfuI GTATCC 1 cut(s) 779
BglII AGATCT 1 cut(s) 450
BisI GCNGC 4 cut(s) 297, 421, 539, 613
BlsI GCNGC 4 cut(s) 298, 422, 540, 614
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 766
BmgBI CACGTC 1 cut(s) 853
BmiI GGNNCC 2 cut(s) 793, 911
BmrFI CCNGG 1 cut(s) 766
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 543
BsaBI GATNNNNATC 2 cut(s) 111, 171
BsaJI CCNNGG 2 cut(s) 442, 765
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 196
Bse3DI GCAATG 2 cut(s) 329, 525
Bse8I GATNNNNATC 2 cut(s) 111, 171
BseBI CCWGG 1 cut(s) 766
BseDI CCNNGG 2 cut(s) 442, 765
BseGI GGATG 4 cut(s) 25, 592, 640, 775
BseJI GATNNNNATC 2 cut(s) 111, 171
BseLI CCNNNNNNNGG 2 cut(s) 72, 196
BseMI GCAATG 2 cut(s) 329, 525
BseMII CTCAG 2 cut(s) 268, 728
BseXI GCAGC 4 cut(s) 283, 432, 525, 599
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 875
BshNI GGYRCC 1 cut(s) 909
BslFI GGGAC 2 cut(s) 8, 768
BslI CCNNNNNNNGG 2 cut(s) 72, 196
BsmFI GGGAC 2 cut(s) 8, 768
Bsp143I GATC 6 cut(s) 94, 106, 450, 558, 580, 589
BspACI CCGC 2 cut(s) 607, 970
BspCNI CTCAG 2 cut(s) 267, 727
BspLI GGNNCC 2 cut(s) 793, 911
BspMAI CTGCAG 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 909
BspTI CTTAAG 2 cut(s) 316, 548
BsrDI GCAATG 2 cut(s) 329, 525
BssECI CCNNGG 2 cut(s) 442, 765
BssMI GATC 6 cut(s) 94, 106, 450, 558, 580, 589
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 766
Bst4CI ACNGT 3 cut(s) 103, 353, 791
Bst6I CTCTTC 1 cut(s) 177
BstAFI CTTAAG 2 cut(s) 316, 548
BstAPI GCANNNNNTGC 1 cut(s) 686
BstC8I GCNNGC 3 cut(s) 74, 361, 687
BstDEI CTNAG 3 cut(s) 254, 543, 714
BstF5I GGATG 4 cut(s) 25, 592, 640, 775
BstKTI GATC 6 cut(s) 97, 109, 453, 561, 583, 592
BstMBI GATC 6 cut(s) 94, 106, 450, 558, 580, 589
BstMWI GCNNNNNNNGC 2 cut(s) 544, 686
BstNI CCWGG 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 764
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 4 cut(s) 283, 432, 525, 599
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuI GTATCC 1 cut(s) 779
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 4 cut(s) 25, 592, 640, 775
Cac8I GCNNGC 3 cut(s) 74, 361, 687
CseI GACGC 1 cut(s) 607
Csp6I GTAC 4 cut(s) 46, 144, 403, 937
CviAII CATG 5 cut(s) 42, 69, 267, 811, 926
CviQI GTAC 4 cut(s) 46, 144, 403, 937
DdeI CTNAG 3 cut(s) 254, 543, 714
DpnI GATC 6 cut(s) 96, 108, 452, 560, 582, 591
DpnII GATC 6 cut(s) 94, 106, 450, 558, 580, 589
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 442
Eco57I CTGAAG 2 cut(s) 258, 873
EcoRII CCWGG 1 cut(s) 764
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 5 cut(s) 45, 72, 270, 814, 929
FaqI GGGAC 2 cut(s) 8, 768
FatI CATG 5 cut(s) 41, 68, 266, 810, 925
FauI CCCGC 1 cut(s) 600
Fnu4HI GCNGC 4 cut(s) 297, 421, 539, 613
FokI GGATG 4 cut(s) 32, 599, 647, 782
Fsp4HI GCNGC 4 cut(s) 297, 421, 539, 613
GluI GCNGC 4 cut(s) 297, 421, 539, 613
GsaI CCCAGC 1 cut(s) 339
HgaI GACGC 1 cut(s) 607
Hin1II CATG 5 cut(s) 45, 72, 270, 814, 929
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 2 cut(s) 545, 683
HinfI GANTC 3 cut(s) 5, 877, 884
HpaI GTTAAC 1 cut(s) 532
HphI GGTGA 2 cut(s) 211, 830
Hpy166II GTNNAC 4 cut(s) 144, 349, 390, 532
Hpy188I TCNGA 3 cut(s) 277, 796, 850
Hpy188III TCNNGA 9 cut(s) 92, 116, 286, 371, 562, 584, 881, 891, 975
Hpy8I GTNNAC 4 cut(s) 144, 349, 390, 532
HpyAV CCTTC 2 cut(s) 321, 853
HpyCH4III ACNGT 3 cut(s) 103, 353, 791
HpyCH4IV ACGT 1 cut(s) 852
HpyCH4V TGCA 8 cut(s) 36, 206, 299, 359, 465, 497, 615, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 686
HpyF3I CTNAG 3 cut(s) 254, 543, 714
HpySE526I ACGT 1 cut(s) 852
Hsp92II CATG 5 cut(s) 45, 72, 270, 814, 929
KspAI GTTAAC 1 cut(s) 532
Kzo9I GATC 6 cut(s) 94, 106, 450, 558, 580, 589
LpnPI CCDG 9 cut(s) 58, 105, 241, 349, 701, 751, 778, 876, 960
Lsp1109I GCAGC 4 cut(s) 283, 432, 525, 599
LweI GCATC 1 cut(s) 181
MaeII ACGT 1 cut(s) 852
MaeIII GTNAC 2 cut(s) 199, 595
MalI GATC 6 cut(s) 96, 108, 452, 560, 582, 591
MboI GATC 6 cut(s) 94, 106, 450, 558, 580, 589
MfeI CAATTG 3 cut(s) 525, 554, 643
MflI RGATCY 1 cut(s) 450
MluCI AATT 9 cut(s) 366, 378, 394, 427, 525, 554, 643, 703, 929
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 8 cut(s) 68, 76, 655, 745, 859, 887, 937, 988
MseI TTAA 5 cut(s) 153, 213, 317, 531, 549
MspCI CTTAAG 2 cut(s) 316, 548
MspR9I CCNGG 1 cut(s) 766
MunI CAATTG 3 cut(s) 525, 554, 643
MvaI CCWGG 1 cut(s) 766
MwoI GCNNNNNNNGC 2 cut(s) 544, 686
NdeII GATC 6 cut(s) 94, 106, 450, 558, 580, 589
NlaIII CATG 5 cut(s) 45, 72, 270, 814, 929
NlaIV GGNNCC 2 cut(s) 793, 911
NmuCI GTSAC 2 cut(s) 199, 595
PfeI GAWTC 2 cut(s) 877, 884
PkrI GCNGC 4 cut(s) 298, 422, 540, 614
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 764
PspN4I GGNNCC 2 cut(s) 793, 911
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 4 cut(s) 47, 145, 404, 938
RsaNI GTAC 4 cut(s) 46, 144, 403, 937
SaqAI TTAA 5 cut(s) 153, 213, 317, 531, 549
SatI GCNGC 4 cut(s) 297, 421, 539, 613
Sau3AI GATC 6 cut(s) 94, 106, 450, 558, 580, 589
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 766
SetI ASST 9 cut(s) 425, 549, 624, 655, 687, 713, 855, 864, 870
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 316, 548
SmoI CTYRAG 2 cut(s) 316, 548
Sse9I AATT 9 cut(s) 366, 378, 394, 427, 525, 554, 643, 703, 929
SsiI CCGC 2 cut(s) 607, 970
SspI AATATT 2 cut(s) 502, 577
StyD4I CCNGG 1 cut(s) 764
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 3 cut(s) 103, 353, 791
TaiI ACGT 1 cut(s) 855
TaqI TCGA 2 cut(s) 60, 175
TasI AATT 9 cut(s) 366, 378, 394, 427, 525, 554, 643, 703, 929
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 2 cut(s) 877, 884
Tru1I TTAA 5 cut(s) 153, 213, 317, 531, 549
Tru9I TTAA 5 cut(s) 153, 213, 317, 531, 549
TseFI GTSAC 2 cut(s) 199, 595
TseI GCWGC 4 cut(s) 296, 420, 538, 612
Tsp45I GTSAC 2 cut(s) 199, 595
TspDTI ATGAA 7 cut(s) 141, 255, 318, 528, 684, 786, 942
TspGWI ACGGA 1 cut(s) 147
Vha464I CTTAAG 2 cut(s) 316, 548
XapI RAATTY 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.