Prupe.1G010100_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000637
Physical Location & Seq
Reverse (-)
778038 .. 778621
584 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G010100.1

Sequence Viewer

Length: 339 bp
ATGGAGGATCAACGAAGATGGGAGGAGTTGCACATTGACTGTCTCGTGAATATTTTTGGTAGAGTTGGCTTGGTCTTGCTGCTTTGTGATGTCCCTTTTGTTTGCAAGTCATGGGAATTTTTTTCTGTCACTGTTTTTATAATGTTTGTCATTAGCTGTAGCAACGGTATTGTTACTTTTCTCAAGCTACCTGGGTGGTGCACTGAAGAAGCCTTGATCTGTCCTTGCCTCAATTCTTTGTCGGTGGCTGAAGAACTCTTGTATGAAACTAGATGCATATTTCCAGAACTCATAAAAATTTGGAGGAGCTTTCTTTGGGAGGCAGCTATAATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

113

Amino Acids

13.02

Weight (kDa)

4.63

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 2 cut(s) 116, 297
AcuI CTGAAG 2 cut(s) 225, 270
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 4 cut(s) 156, 187, 309, 326
AluI AGCT 4 cut(s) 156, 187, 309, 326
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 47
Alw44I GTGCAC 1 cut(s) 199
AlwI GGATC 1 cut(s) 15
ApaLI GTGCAC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 79, 323
ApoI RAATTY 2 cut(s) 116, 297
BaeGI GKGCMC 1 cut(s) 203
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 66, 335
BccI CCATC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 2 cut(s) 80, 324
BlsI GCNGC 2 cut(s) 81, 325
Bme1390I CCNGG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 191
BseRI GAGGAG 2 cut(s) 38, 319
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 2 cut(s) 66, 335
BsiHKAI GWGCWC 1 cut(s) 203
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 7, 216
BspPI GGATC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 2 cut(s) 7, 216
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 41, 133, 167
BstKTI GATC 2 cut(s) 10, 219
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 7, 216
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 66, 335
BtsIMutI CAGTG 2 cut(s) 129, 201
CviAII CATG 1 cut(s) 111
CviJI RGCY 7 cut(s) 69, 156, 187, 212, 248, 309, 326
CviKI_1 RGCY 7 cut(s) 69, 156, 187, 212, 248, 309, 326
DpnI GATC 2 cut(s) 9, 218
DpnII GATC 2 cut(s) 7, 216
Eco57I CTGAAG 2 cut(s) 225, 270
EcoRII CCWGG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 278
FaeI CATG 1 cut(s) 114
FaiI YATR 6 cut(s) 112, 140, 264, 278, 293, 329
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 80, 324
Fsp4HI GCNGC 2 cut(s) 80, 324
FspBI CTAG 1 cut(s) 270
GluI GCNGC 2 cut(s) 80, 324
Hin1II CATG 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 46, 284
Hpy8I GTNNAC 1 cut(s) 201
HpyCH4III ACNGT 3 cut(s) 41, 133, 167
HpyCH4V TGCA 4 cut(s) 31, 105, 201, 276
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 2 cut(s) 7, 216
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 3 cut(s) 177, 204, 297
Lsp1109I GCAGC 2 cut(s) 66, 335
LweI GCATC 1 cut(s) 263
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 127, 172
MalI GATC 2 cut(s) 9, 218
MboI GATC 2 cut(s) 7, 216
MboII GAAGA 3 cut(s) 27, 218, 263
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 3 cut(s) 116, 232, 297
MnlI CCTC 4 cut(s) 16, 239, 297, 313
Mph1103I ATGCAT 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
NdeII GATC 2 cut(s) 7, 216
NlaIII CATG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 278
PkrI GCNGC 2 cut(s) 81, 325
PsiI TTATAA 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
SatI GCNGC 2 cut(s) 80, 324
Sau3AI GATC 2 cut(s) 7, 216
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 158, 189, 193, 311, 328
SfaNI GCATC 1 cut(s) 263
SfcI CTRYAG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 3 cut(s) 116, 232, 297
SspI AATATT 1 cut(s) 52
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 3 cut(s) 41, 133, 167
TasI AATT 3 cut(s) 116, 232, 297
TscAI CASTG 2 cut(s) 136, 208
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 79, 323
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 2 cut(s) 136, 208
VneI GTGCAC 1 cut(s) 199
XapI RAATTY 2 cut(s) 116, 297
XspI CTAG 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.