RLG00000008139

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
26152510 .. 26152890
381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008139

Sequence Viewer

Length: 381 bp
ATGGATGAAAGACAATGGGAAAACTGGAATAAAGATTGTTTAGAGAATGTGTTTGGAAGAGTTGGAATGAAGTCACTGCTCTTGGATGTCCCTTTCGTATGTATGTCACGGCACGCAGCAACCCTCGATCCCTCATGCTGGCAAAGTATCGATATTCCAGATATTGTAACTGATCGATATAGTTTTGACCCGCTTGAAATGGAATCTTGGAAATTTTACCCCTTTTTAAAAAGATTTGTACAGGAATATCGAATCGATGAGACTAATTTATATGTCACAGCATTCATAAAGTTTGTCATTGATTGTAGTAAGGGACGTCCTACTTTTGTGCGGCTACCCCTTTGTTCAGAAACAGCTGTGGAATATGTTGCAGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.91

Weight (kDa)

4.73

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 319
AciI CCGC 2 cut(s) 191, 331
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 212
BbvI GCAGC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 254
BisI GCNGC 2 cut(s) 117, 332
BlsI GCNGC 2 cut(s) 118, 333
Bsa29I ATCGAT 3 cut(s) 150, 175, 255
BsaHI GRCGYC 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 29
BseCI ATCGAT 3 cut(s) 150, 175, 255
BseGI GGATG 2 cut(s) 10, 91
BseLI CCNNNNNNNGG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 128
BshVI ATCGAT 3 cut(s) 150, 175, 255
BslFI GGGAC 2 cut(s) 74, 327
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 74, 327
BsmI GAATGC 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 127, 172
BspACI CCGC 2 cut(s) 191, 331
BspDI ATCGAT 3 cut(s) 150, 175, 255
BspPI GGATC 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 1 cut(s) 29
BssMI GATC 2 cut(s) 127, 172
BssNI GRCGYC 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 114, 140
BstF5I GGATG 2 cut(s) 10, 91
BstKTI GATC 2 cut(s) 130, 175
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 127, 172
BstV1I GCAGC 1 cut(s) 128
Bsu15I ATCGAT 3 cut(s) 150, 175, 255
BsuTUI ATCGAT 3 cut(s) 150, 175, 255
BtsCI GGATG 2 cut(s) 10, 91
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 114, 140
ClaI ATCGAT 3 cut(s) 150, 175, 255
Csp6I GTAC 1 cut(s) 239
CviAII CATG 1 cut(s) 135
CviJI RGCY 2 cut(s) 334, 356
CviKI_1 RGCY 2 cut(s) 334, 356
CviQI GTAC 1 cut(s) 239
DpnI GATC 2 cut(s) 129, 174
DpnII GATC 2 cut(s) 127, 172
DraI TTTAAA 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
FaeI CATG 1 cut(s) 138
FaiI YATR 9 cut(s) 100, 104, 136, 180, 271, 273, 287, 366, 377
FaqI GGGAC 2 cut(s) 74, 327
FatI CATG 1 cut(s) 134
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 117, 332
FokI GGATG 2 cut(s) 17, 98
Fsp4HI GCNGC 2 cut(s) 117, 332
GluI GCNGC 2 cut(s) 117, 332
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 1 cut(s) 138
HinfI GANTC 2 cut(s) 203, 252
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 371
HpySE526I ACGT 1 cut(s) 316
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 1 cut(s) 138
Kzo9I GATC 2 cut(s) 127, 172
LpnPI CCDG 4 cut(s) 10, 124, 171, 227
Lsp1109I GCAGC 1 cut(s) 128
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 4 cut(s) 72, 105, 166, 274
MalI GATC 2 cut(s) 129, 174
MboI GATC 2 cut(s) 127, 172
MboII GAAGA 1 cut(s) 69
MluCI AATT 2 cut(s) 212, 265
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 2 cut(s) 134, 142
MseI TTAA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 281
NdeII GATC 2 cut(s) 127, 172
NlaIII CATG 1 cut(s) 138
NmuCI GTSAC 3 cut(s) 72, 105, 274
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 203, 252
PkrI GCNGC 2 cut(s) 118, 333
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 2 cut(s) 117, 332
Sau3AI GATC 2 cut(s) 127, 172
SetI ASST 2 cut(s) 319, 358
Sse9I AATT 2 cut(s) 212, 265
SsiI CCGC 2 cut(s) 191, 331
TaiI ACGT 1 cut(s) 319
TaqI TCGA 5 cut(s) 126, 150, 175, 250, 255
TasI AATT 2 cut(s) 212, 265
TatI WGTACW 1 cut(s) 238
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 2 cut(s) 203, 252
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 3 cut(s) 72, 105, 274
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 72, 105, 274
TspDTI ATGAA 3 cut(s) 21, 83, 274
TspRI CASTG 1 cut(s) 81
XapI RAATTY 1 cut(s) 212
ZraI GACGTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.