Prupe.2G138900_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000637
Physical Location & Seq
Forward (+)
19605235 .. 19608246
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G138900.1

Sequence Viewer

Length: 417 bp
ATGGATGAACAAAGATGGGAGGACTTAGAAATGGACTGCTTGGTCAAAGTGTTGGAGGAAGTGGGAATGGAGTCACTGCTTTTGGATGTCCCTTTTGTGTGCAAGTCATGGTACAAGGCGGCCCTCAATCCTTCATGCTGGCAATCTCTCATTTTCCCAGACAATGAATGTATGGAAGTCTGGCCTTGGGATGTGTCTGAATGTCCGAATTTTCAAAATCTTATGGACAGATTTGCAAGTGAGTATCAAATTGATGGGGATCGTTGCTCTGTCTCCGCTTTTCTAAAGTTTGTTATCAATCGGAGCAGCGGAAACGCTATTGTGCTCAAGCTTCCCAAACGCTGCACAGTAGAGCCTTTGAATTTGCTGCAAATGTGCAAGTTTTCTCATTTTCACTTGTTTAACAAAACAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

139

Amino Acids

16.11

Weight (kDa)

4.76

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AciI CCGC 3 cut(s) 119, 276, 309
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 2 cut(s) 208, 361
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 2 cut(s) 215, 361
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 267
AoxI GGCC 2 cut(s) 120, 182
ApeKI GCWGC 3 cut(s) 306, 342, 367
ApoI RAATTY 2 cut(s) 208, 361
AspS9I GGNCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 3 cut(s) 318, 329, 354
BccI CCATC 2 cut(s) 9, 248
BcoDI GTCTC 1 cut(s) 277
BisI GCNGC 4 cut(s) 120, 307, 343, 368
BlsI GCNGC 4 cut(s) 121, 308, 344, 369
BmgT120I GGNCC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 3 cut(s) 10, 91, 196
BseJI GATNNNNATC 1 cut(s) 258
BseXI GCAGC 3 cut(s) 318, 329, 354
BsgI GTGCAG 1 cut(s) 328
BshFI GGCC 2 cut(s) 122, 184
BsiHKAI GWGCWC 1 cut(s) 327
BslFI GGGAC 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 2 cut(s) 122, 184
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 3 cut(s) 119, 276, 309
BspANI GGCC 2 cut(s) 122, 184
BspPI GGATC 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 3 cut(s) 10, 91, 196
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 259
BstV1I GCAGC 3 cut(s) 318, 329, 354
BsuRI GGCC 2 cut(s) 122, 184
BtsCI GGATG 3 cut(s) 10, 91, 196
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 108, 135
CviJI RGCY 4 cut(s) 122, 184, 331, 355
CviKI_1 RGCY 4 cut(s) 122, 184, 331, 355
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 25
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 111, 138
FaiI YATR 4 cut(s) 109, 136, 173, 224
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 107, 134
Fnu4HI GCNGC 4 cut(s) 120, 307, 343, 368
FokI GGATG 3 cut(s) 17, 98, 203
Fsp4HI GCNGC 4 cut(s) 120, 307, 343, 368
GluI GCNGC 4 cut(s) 120, 307, 343, 368
HaeIII GGCC 2 cut(s) 122, 184
Hin1II CATG 2 cut(s) 111, 138
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 199, 207, 303
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 5 cut(s) 102, 236, 345, 370, 378
HpyF3I CTNAG 1 cut(s) 25
Hsp92II CATG 2 cut(s) 111, 138
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 3 cut(s) 124, 166, 171
Lsp1109I GCAGC 3 cut(s) 318, 329, 354
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 3 cut(s) 208, 249, 361
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 13, 49, 134
MseI TTAA 2 cut(s) 402, 415
MspA1I CMGCKG 1 cut(s) 309
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 111, 138
NmuCI GTSAC 1 cut(s) 72
PkrI GCNGC 4 cut(s) 121, 308, 344, 369
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 402, 415
SatI GCNGC 4 cut(s) 120, 307, 343, 368
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 327
SetI ASST 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 3 cut(s) 208, 249, 361
SsiI CCGC 3 cut(s) 119, 276, 309
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 349
TasI AATT 3 cut(s) 208, 249, 361
TauI GCSGC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 402, 415
Tru9I TTAA 2 cut(s) 402, 415
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 3 cut(s) 306, 342, 367
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 3 cut(s) 21, 123, 180
TspRI CASTG 1 cut(s) 81
XapI RAATTY 2 cut(s) 208, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.