Rh4CG201900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000637
Physical Location & Seq
Reverse (-)
42805365 .. 42808385
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG201900.1

Sequence Viewer

Length: 936 bp
ATGGGAATGGGAAACGACGTCGTTGCCGAGGGAGAAAAGGTTGACGAACGGAGCTTGCCGGAATTCGATTCAGAGCAGCCTAAGGTCGTCGTTGTGATGAGTCGGAGATCTGGCAAGCCGGTGTACTGGATTATTCAGCTCCAGCTAAACTTACAATATAATCTCCCCTTCTCTCCTGTTCTTGTTTATCGGATTACCTCCCTCCCTCCCTCCCTGCCTTTGTTTATCTCCCTTAAAGATGGAAGATCAACGAATGTGGGAAGACTTAAACACGGACTGCTTGCTGATCAAACTTTTGACTTTAGTCGCCAAGGTGTTGAACCTAATACCATTTGTCAAAGATTTGTTTCTGAATTTCGAATTGATAAGAGTCATTTCTCCTCGACTGCTTTTATGAAGTGTGTCATCAATCATAGCCGAGGAAAAGCTACTTCTATCACACTACCTGCATATTGTACTCAAGAGGCAGTTGAGTTTGTTGCCCATGTATGTCCTGACCTTGTGTTTTTGGATATATCTCGATATTTATTGTTTACCCCATCAAGAAAGCTAATATCAGATCTGATTTGCAAGTGGGAAAATTTGGTGGAGTTATGGTTAAGTTGGAGCTATAATTTAGAGAAGATCCTGTCGCAGATCAGTGTTCATTGCAAGAGTTTTTGTTCTCTGCGTGTGTCTTATGCCTCCATTCATAAAGATGAAGCATTGACAATCACTACATTGGTGCCTAATATTAAGTACTTAAACTTGAGGTCTGCAGATTTTGATCGGGACAGCCTTGTCTCAATACTGAGGAGCTGCAAAAGTCTTGTGCTTTTGGATGTCAGAGATTGTGTTGGGTTTAATGAAGCTGATGAGGAAATCTTGAAGCTTTCTTCACATATTAGTCAATTTATGTGTGAGGGTTCGAAAGAAGAATTGTTTATTATACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

311

Amino Acids

35.37

Weight (kDa)

6.4

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 724
AclWI GGATC 1 cut(s) 619
AcsI RAATTY 3 cut(s) 62, 353, 580
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 3 cut(s) 125, 457, 740
AgsI TTSAA 2 cut(s) 320, 868
AluBI AGCT 9 cut(s) 54, 139, 145, 428, 550, 609, 798, 851, 871
AluI AGCT 9 cut(s) 54, 139, 145, 428, 550, 609, 798, 851, 871
Alw26I GTCTC 1 cut(s) 787
AlwI GGATC 1 cut(s) 619
ApeKI GCWGC 2 cut(s) 76, 798
ApoI RAATTY 3 cut(s) 62, 353, 580
AsuII TTCGAA 2 cut(s) 358, 908
AxyI CCTNAGG 1 cut(s) 81
BanI GGYRCC 1 cut(s) 724
BbsI GAAGAC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 88, 785
BccI CCATC 2 cut(s) 233, 547
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 787
BfmI CTRYAG 1 cut(s) 756
BfuAI ACCTGC 1 cut(s) 454
BglII AGATCT 2 cut(s) 107, 559
BisI GCNGC 2 cut(s) 77, 799
BlsI GCNGC 2 cut(s) 78, 800
BmcAI AGTACT 1 cut(s) 740
BmiI GGNNCC 1 cut(s) 726
BoxI GACNNNNGTC 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 125
Bpu14I TTCGAA 2 cut(s) 358, 908
BpuEI CTTGAG 2 cut(s) 444, 769
BsaBI GATNNNNATC 1 cut(s) 765
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 27, 310, 418
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 581, 611
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 131
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 646
Bse8I GATNNNNATC 1 cut(s) 765
BseDI CCNNGG 3 cut(s) 27, 310, 418
BseGI GGATG 1 cut(s) 826
BseJI GATNNNNATC 1 cut(s) 765
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 370, 808
BseXI GCAGC 2 cut(s) 88, 785
BshNI GGYRCC 1 cut(s) 724
BsiSI CCGG 2 cut(s) 59, 119
BslFI GGGAC 1 cut(s) 785
BsmAI GTCTC 1 cut(s) 787
BsmFI GGGAC 1 cut(s) 785
Bsp119I TTCGAA 2 cut(s) 358, 908
Bsp143I GATC 7 cut(s) 107, 245, 286, 559, 624, 636, 766
BspCNI CTCAG 1 cut(s) 783
BspLI GGNNCC 1 cut(s) 726
BspMAI CTGCAG 1 cut(s) 760
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 1 cut(s) 619
BspT104I TTCGAA 2 cut(s) 358, 908
BspT107I GGYRCC 1 cut(s) 724
BsrDI GCAATG 1 cut(s) 646
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 3 cut(s) 27, 310, 418
BssMI GATC 7 cut(s) 107, 245, 286, 559, 624, 636, 766
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 18
BstBI TTCGAA 2 cut(s) 358, 908
BstC8I GCNNGC 3 cut(s) 56, 116, 282
BstDEI CTNAG 2 cut(s) 81, 791
BstF5I GGATG 1 cut(s) 826
BstKTI GATC 7 cut(s) 110, 248, 289, 562, 627, 639, 769
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 7 cut(s) 107, 245, 286, 559, 624, 636, 766
BstPAI GACNNNNGTC 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 756
BstV1I GCAGC 2 cut(s) 88, 785
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 3 cut(s) 107, 559, 624
BstYI RGATCY 3 cut(s) 107, 559, 624
Bsu36I CCTNAGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 826
BtsIMutI CAGTG 1 cut(s) 646
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 3 cut(s) 56, 116, 282
Cfr10I RCCGGY 1 cut(s) 118
Csp6I GTAC 3 cut(s) 124, 456, 739
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 2 cut(s) 485, 933
CviQI GTAC 3 cut(s) 124, 456, 739
DdeI CTNAG 2 cut(s) 81, 791
DpnI GATC 7 cut(s) 109, 247, 288, 561, 626, 638, 768
DpnII GATC 7 cut(s) 107, 245, 286, 559, 624, 636, 766
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
Eco130I CCWWGG 1 cut(s) 310
Eco81I CCTNAGG 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 2 cut(s) 488, 936
FaqI GGGAC 1 cut(s) 785
FatI CATG 2 cut(s) 484, 932
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 77, 799
FokI GGATG 1 cut(s) 833
Fsp4HI GCNGC 2 cut(s) 77, 799
GluI GCNGC 2 cut(s) 77, 799
GsuI CTGGAG 1 cut(s) 125
HapII CCGG 2 cut(s) 59, 119
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 488, 936
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 3 cut(s) 68, 100, 370
HpaII CCGG 2 cut(s) 59, 119
Hpy166II GTNNAC 3 cut(s) 43, 124, 534
Hpy188I TCNGA 7 cut(s) 73, 105, 192, 352, 559, 564, 827
Hpy188III TCNNGA 6 cut(s) 461, 494, 519, 543, 770, 865
Hpy8I GTNNAC 3 cut(s) 43, 124, 534
Hpy99I CGWCG 3 cut(s) 20, 23, 92
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 5 cut(s) 449, 570, 651, 758, 801
HpyF3I CTNAG 2 cut(s) 81, 791
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 488, 936
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 7 cut(s) 107, 245, 286, 559, 624, 636, 766
LmnI GCTCC 4 cut(s) 51, 144, 606, 795
Lsp1109I GCAGC 2 cut(s) 88, 785
MaeII ACGT 1 cut(s) 18
MalI GATC 7 cut(s) 109, 247, 288, 561, 626, 638, 768
MboI GATC 7 cut(s) 107, 245, 286, 559, 624, 636, 766
MboII GAAGA 5 cut(s) 255, 273, 634, 867, 926
MflI RGATCY 3 cut(s) 107, 559, 624
MluCI AATT 7 cut(s) 62, 353, 360, 580, 613, 890, 917
MlyI GAGTC 2 cut(s) 109, 379
MmeI TCCRAC 2 cut(s) 83, 584
MseI TTAA 6 cut(s) 234, 267, 599, 735, 743, 843
MslI CAYNNNNRTG 1 cut(s) 696
MspI CCGG 2 cut(s) 59, 119
NdeII GATC 7 cut(s) 107, 245, 286, 559, 624, 636, 766
NlaIII CATG 2 cut(s) 488, 936
NlaIV GGNNCC 1 cut(s) 726
NmeAIII GCCGAG 2 cut(s) 52, 443
NspV TTCGAA 2 cut(s) 358, 908
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 78, 800
PleI GAGTC 2 cut(s) 108, 378
PpsI GAGTC 2 cut(s) 108, 378
PshAI GACNNNNGTC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 726
PstI CTGCAG 1 cut(s) 760
PsuI RGATCY 3 cut(s) 107, 559, 624
RsaI GTAC 3 cut(s) 125, 457, 740
RsaNI GTAC 3 cut(s) 124, 456, 739
RseI CAYNNNNRTG 1 cut(s) 696
SaqAI TTAA 6 cut(s) 234, 267, 599, 735, 743, 843
SatI GCNGC 2 cut(s) 77, 799
Sau3AI GATC 7 cut(s) 107, 245, 286, 559, 624, 636, 766
ScaI AGTACT 1 cut(s) 740
SchI GAGTC 2 cut(s) 109, 379
SfcI CTRYAG 1 cut(s) 756
SfuI TTCGAA 2 cut(s) 358, 908
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 2 cut(s) 459, 748
SmoI CTYRAG 2 cut(s) 459, 748
Sse9I AATT 7 cut(s) 62, 353, 360, 580, 613, 890, 917
SspI AATATT 1 cut(s) 733
StyI CCWWGG 1 cut(s) 310
TaiI ACGT 1 cut(s) 21
TaqI TCGA 5 cut(s) 66, 358, 383, 520, 908
TasI AATT 7 cut(s) 62, 353, 360, 580, 613, 890, 917
TatI WGTACW 3 cut(s) 123, 455, 738
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 6 cut(s) 234, 267, 599, 735, 743, 843
Tru9I TTAA 6 cut(s) 234, 267, 599, 735, 743, 843
TscAI CASTG 1 cut(s) 646
TseI GCWGC 2 cut(s) 76, 798
TspDTI ATGAA 5 cut(s) 410, 635, 680, 714, 861
TspGWI ACGGA 2 cut(s) 64, 288
TspRI CASTG 1 cut(s) 646
XapI RAATTY 3 cut(s) 62, 353, 580
ZraI GACGTC 1 cut(s) 19
ZrmI AGTACT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.