Rroxscaffold_5G00358610

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000637
Physical Location & Seq
Forward (+)
38726773 .. 38728756
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358610.1

Sequence Viewer

Length: 219 bp
ATGGCTCAACGAAGGTGGGAGGAGTTAGACATTGACTGTTTAACAAATGTTTTTGGAAGAGTTGGGATGGAGTCACTTCTTGTGCACATTCCTTTTGTCTGCAAGTCATGGCATAGAGCAAGCCTTGATCCTTCATGCTGGCTGAGTGTTGATTTTCCAAATGTAGACCCATCACATCTATCTGTTCCTGTTCCTTTGATAAGATTTGAACATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

72

Amino Acids

8.36

Weight (kDa)

6.01

Isoelectric Point (pI)

68.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 165
AclWI GGATC 1 cut(s) 122
AgsI TTSAA 1 cut(s) 209
Alw21I GWGCWC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 83
AlwI GGATC 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 2 cut(s) 61, 178
BseGI GGATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 135
BspPI GGATC 1 cut(s) 122
BssMI GATC 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 121, 140
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 121, 140
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 2 cut(s) 108, 135
CviJI RGCY 3 cut(s) 5, 123, 142
CviKI_1 RGCY 3 cut(s) 5, 123, 142
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
FaeI CATG 2 cut(s) 111, 138
FaiI YATR 4 cut(s) 109, 114, 136, 213
FatI CATG 2 cut(s) 107, 134
FblI GTMKAC 1 cut(s) 165
FokI GGATG 1 cut(s) 79
Hin1II CATG 2 cut(s) 111, 138
HinfI GANTC 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 85, 166
Hpy8I GTNNAC 2 cut(s) 85, 166
HpyAV CCTTC 2 cut(s) 6, 141
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 85, 102
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 2 cut(s) 111, 138
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 2 cut(s) 124, 201
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 87
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 1 cut(s) 13
MseI TTAA 1 cut(s) 41
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 111, 138
NmuCI GTSAC 1 cut(s) 72
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 1 cut(s) 127
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 87
SetI ASST 1 cut(s) 17
SgeI CNNG 8 cut(s) 92, 115, 120, 132, 137, 147, 151, 200
TaaI ACNGT 1 cut(s) 38
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 123
VneI GTGCAC 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.