FvH4_4g13862

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000637
Physical Location & Seq
Forward (+)
17380208 .. 17381081
874 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13862.t1

Sequence Viewer

Length: 798 bp
ATGGAGTCGCTTCTCTTGGATGTCCCTTTTGTGTGCAAGTCATGGCACAAAGCGACCCTCAATCCATTGTGCTGGAAACATCTTGTATTTCCAGGCAATGAAAAGTTTAATCCTTGGAATGCTATCAATGGACATGAAAGTAGCTGGGGTTTTCAAAACCTTGTGAAGAGATTTGAAAGCCAATATCGAATCGATGGGAGTCGTTGCTCCGTCACTACTTTTATCAAGTTCATCGTCAATCGTAGCGGGGGAAAGGCAACCTTGCTCAAGCTGCCCAGATGCTGCACAGTTGAAGTATTCAAATATGTCACAACTGCGTGCCCAGAAATTAAGACTCTTAGTATCCCCGAAAATCTATTGTTCAACAAACACATGAATCTTGAATTGATTGGAAAGTGGAAAAAATTGGAGGTGGTGTCATTGGATTTGGGTTGCAGCTTTTATTTGGAGGAAATACTTGCAGTGCTGATAAAGGAATGTAAGCAATTTTGTGGTTTGGATCTATCTAACGCCTACATTTTCGAGCATGAGGCTTCGACAATCGTCAACTTGGCGCCTACGATTAAGTACTTAAACTTGAGGGGTGCAAAAACGAATCGTTATAGTGTTTACATGATACTAAAGGGATGCAAAGATCTTGTGGTTTTCGATGCCAGGAATTGCGTAGGTTTCAATGAAGATGATAGTGAAATATCGAAACATGCTTCTCATGTCAAGAGTTTTAAGTGCAAGGGTTCTCAACTTCTTGAGTGTCTTATTGAACCATCATATGGGATGACATTTGGTTTAATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

266

Amino Acids

30.14

Weight (kDa)

8.61

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 553
AccB7I CCANNNNNTGG 1 cut(s) 770
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 507
AcyI GRCGYC 1 cut(s) 554
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 770
AgsI TTSAA 8 cut(s) 155, 176, 293, 301, 364, 383, 673, 761
AjnI CCWGG 2 cut(s) 91, 653
AluBI AGCT 3 cut(s) 144, 271, 438
AluI AGCT 3 cut(s) 144, 271, 438
AlwI GGATC 1 cut(s) 507
AlwNI CAGNNNCTG 1 cut(s) 282
ApeKI GCWGC 3 cut(s) 271, 282, 435
AspLEI GCGC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 553
BbvI GCAGC 3 cut(s) 258, 269, 447
BccI CCATC 2 cut(s) 188, 772
BciT130I CCWGG 2 cut(s) 93, 655
BciVI GTATCC 1 cut(s) 353
BfoI RGCGCY 1 cut(s) 557
BfuI GTATCC 1 cut(s) 353
BglII AGATCT 1 cut(s) 634
BisI GCNGC 3 cut(s) 272, 283, 436
BlsI GCNGC 3 cut(s) 273, 284, 437
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 2 cut(s) 93, 655
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 2 cut(s) 93, 655
BmsI GCATC 3 cut(s) 269, 617, 640
BoxI GACNNNNGTC 1 cut(s) 542
BpuEI CTTGAG 3 cut(s) 251, 598, 767
Bsa29I ATCGAT 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 93, 655
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 3 cut(s) 25, 632, 780
BseLI CCNNNNNNNGG 1 cut(s) 770
BseMI GCAATG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 3 cut(s) 258, 269, 447
BseYI CCCAGC 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 553
BshVI ATCGAT 1 cut(s) 192
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 499, 634
BspACI CCGC 1 cut(s) 246
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 555
BspPI GGATC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 499, 634
BssNI GRCGYC 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 93, 655
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 554
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 3 cut(s) 25, 632, 780
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 2 cut(s) 502, 637
BstMBI GATC 2 cut(s) 499, 634
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNI CCWGG 2 cut(s) 93, 655
BstNSI RCATGY 1 cut(s) 704
BstPAI GACNNNNGTC 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 91, 653
BstSLI GKGCMC 1 cut(s) 323
BstV1I GCAGC 3 cut(s) 258, 269, 447
BstX2I RGATCY 2 cut(s) 499, 634
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 2 cut(s) 499, 634
Bsu15I ATCGAT 1 cut(s) 192
BsuI GTATCC 1 cut(s) 353
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 3 cut(s) 25, 632, 780
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 319
CaiI CAGNNNCTG 1 cut(s) 282
CfoI GCGC 1 cut(s) 556
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 1 cut(s) 568
CviAII CATG 7 cut(s) 42, 134, 373, 527, 613, 701, 710
CviJI RGCY 5 cut(s) 144, 180, 271, 438, 533
CviKI_1 RGCY 5 cut(s) 144, 180, 271, 438, 533
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 1 cut(s) 338
DinI GGCGCC 1 cut(s) 555
DpnI GATC 2 cut(s) 501, 636
DpnII GATC 2 cut(s) 499, 634
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 91, 653
EcoT14I CCWWGG 1 cut(s) 113
EgeI GGCGCC 1 cut(s) 555
EheI GGCGCC 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 7 cut(s) 45, 137, 376, 530, 616, 704, 713
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 8
FatI CATG 7 cut(s) 41, 133, 372, 526, 612, 700, 709
FauI CCCGC 1 cut(s) 239
FauNDI CATATG 1 cut(s) 769
Fnu4HI GCNGC 3 cut(s) 272, 283, 436
FokI GGATG 3 cut(s) 32, 639, 787
Fsp4HI GCNGC 3 cut(s) 272, 283, 436
GlaI GCGC 1 cut(s) 555
GluI GCNGC 3 cut(s) 272, 283, 436
GsaI CCCAGC 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 557
HhaI GCGC 1 cut(s) 556
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 7 cut(s) 45, 137, 376, 530, 616, 704, 713
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 6 cut(s) 5, 189, 199, 334, 376, 595
Hpy166II GTNNAC 2 cut(s) 547, 610
Hpy188III TCNNGA 3 cut(s) 380, 715, 746
Hpy8I GTNNAC 2 cut(s) 547, 610
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 7 cut(s) 36, 285, 435, 461, 587, 630, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 7 cut(s) 45, 137, 376, 530, 616, 704, 713
HspAI GCGC 1 cut(s) 554
KasI GGCGCC 1 cut(s) 553
Kzo9I GATC 2 cut(s) 499, 634
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 8 cut(s) 58, 78, 105, 130, 289, 336, 640, 667
Lsp1109I GCAGC 3 cut(s) 258, 269, 447
LweI GCATC 3 cut(s) 269, 617, 640
MaeIII GTNAC 2 cut(s) 211, 307
MalI GATC 2 cut(s) 501, 636
MboI GATC 2 cut(s) 499, 634
MboII GAAGA 2 cut(s) 178, 689
MflI RGATCY 2 cut(s) 499, 634
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 6 cut(s) 327, 383, 404, 485, 658, 789
Mly113I GGCGCC 1 cut(s) 554
MlyI GAGTC 3 cut(s) 14, 208, 328
MnlI CCTC 5 cut(s) 68, 403, 442, 523, 573
MseI TTAA 6 cut(s) 108, 330, 564, 572, 723, 788
MspR9I CCNGG 2 cut(s) 93, 655
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 93, 655
MwoI GCNNNNNNNGC 1 cut(s) 271
NarI GGCGCC 1 cut(s) 554
NdeI CATATG 1 cut(s) 769
NdeII GATC 2 cut(s) 499, 634
NlaIII CATG 7 cut(s) 45, 137, 376, 530, 616, 704, 713
NlaIV GGNNCC 1 cut(s) 555
NmuCI GTSAC 2 cut(s) 211, 307
NspI RCATGY 1 cut(s) 704
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 3 cut(s) 189, 376, 595
PflMI CCANNNNNTGG 1 cut(s) 770
PkrI GCNGC 3 cut(s) 273, 284, 437
PleI GAGTC 3 cut(s) 13, 207, 328
PluTI GGCGCC 1 cut(s) 557
PpsI GAGTC 3 cut(s) 13, 207, 328
PshAI GACNNNNGTC 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 91, 653
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 2 cut(s) 91, 653
PspN4I GGNNCC 1 cut(s) 555
PstNI CAGNNNCTG 1 cut(s) 282
PsuI RGATCY 2 cut(s) 499, 634
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
SaqAI TTAA 6 cut(s) 108, 330, 564, 572, 723, 788
SatI GCNGC 3 cut(s) 272, 283, 436
Sau3AI GATC 2 cut(s) 499, 634
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 3 cut(s) 14, 208, 328
ScrFI CCNGG 2 cut(s) 93, 655
SduI GDGCHC 1 cut(s) 323
SetI ASST 7 cut(s) 146, 162, 263, 273, 414, 440, 670
SfaNI GCATC 3 cut(s) 269, 617, 640
SfoI GGCGCC 1 cut(s) 555
SmlI CTYRAG 3 cut(s) 266, 577, 746
SmoI CTYRAG 3 cut(s) 266, 577, 746
Sse9I AATT 6 cut(s) 327, 383, 404, 485, 658, 789
SsiI CCGC 1 cut(s) 246
SspDI GGCGCC 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 91, 653
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 6 cut(s) 187, 192, 522, 536, 648, 695
TasI AATT 6 cut(s) 327, 383, 404, 485, 658, 789
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 3 cut(s) 189, 376, 595
Tru1I TTAA 6 cut(s) 108, 330, 564, 572, 723, 788
Tru9I TTAA 6 cut(s) 108, 330, 564, 572, 723, 788
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 2 cut(s) 211, 307
TseI GCWGC 3 cut(s) 271, 282, 435
Tsp45I GTSAC 2 cut(s) 211, 307
TspDTI ATGAA 5 cut(s) 114, 150, 220, 389, 690
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 468
Van91I CCANNNNNTGG 1 cut(s) 770
XceI RCATGY 1 cut(s) 704
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.