Rh6CG237600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000637
Physical Location & Seq
Reverse (-)
40313805 .. 40314687
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG237600.1

Sequence Viewer

Length: 228 bp
ATGGAAGCAGATGAACGGAGATGGGAGGAATTAGAGGTTGACTGTTTGATGAATGTATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGTCGTAGCAAAGGAAAGGTTATTTCTCTGAGGCTACCTCCATGTGCTACAGATTATGTCTTGAAATATGTTGCAGATAAATCAAGTCCAAATCTTCTAGCTCAAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

75

Amino Acids

8.52

Weight (kDa)

4.92

Isoelectric Point (pI)

60.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
BccI CCATC 1 cut(s) 15
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BpuEI CTTGAG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 80
BseGI GGATG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 97
CviAII CATG 2 cut(s) 114, 156
CviJI RGCY 2 cut(s) 148, 215
CviKI_1 RGCY 2 cut(s) 148, 215
DdeI CTNAG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
FaeI CATG 2 cut(s) 117, 159
FaiI YATR 5 cut(s) 106, 115, 157, 171, 183
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 113, 155
FokI GGATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 212
Hin1II CATG 2 cut(s) 117, 159
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 175, 218
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 108, 188
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 2 cut(s) 117, 159
MaeI CTAG 1 cut(s) 212
MboII GAAGA 2 cut(s) 75, 200
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 5 cut(s) 19, 28, 138, 162, 214
NlaIII CATG 2 cut(s) 117, 159
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
SchI GAGTC 1 cut(s) 86
SetI ASST 4 cut(s) 39, 135, 154, 217
SfcI CTRYAG 1 cut(s) 162
SgeI CNNG 6 cut(s) 121, 126, 168, 187, 210, 224
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 1 cut(s) 29
SspMI CTAG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 44
TasI AATT 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 27, 65
TspGWI ACGGA 1 cut(s) 31
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.