Rh4AG187200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000637
Physical Location & Seq
Reverse (-)
46655896 .. 46657933
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG187200.1

Sequence Viewer

Length: 873 bp
ATGGAAGATGAACGAAAATGGGAGGAATTAGAGGTTGACTGTTTGATGAATATATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGGTACAAAGCAACCCTCGACCCTTCATGCTGGCAATATCTCATATTTCCTGATCTTACTGTTGATCGTTATCTTGACTTTGATGAAGACGGATATTGGTGTACCCTTATTAAAAGATTTGTAGATGAGTATCGACTTGAAGAGAGCCGTTTCTCGGTGACTGCATTTGTTAAGTTTATAATCAGTCGTAGCAAAGGAAAGGCTATTTATCTCAGGCTATCTTCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTTCCTTAAAGCTTCTTTCATTGCCCAGCCGTTTAGTGAACCGTAATGCAAGCATAATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCTATAATTTGGAAAACTTCCTTGGACAGATCTCCATTTACTGCAAGAACTTGTGTCTTTTGAATGTGGCTAATGCAAATATTGGTAAAGATGAAGCAATGGCAATTGTTAACTTGCTGCCTAAGCTTAAGCAATTGATCTTGAAGAAAGCAAATATTGATCGGGATGATCTTGTGACGCTACTGCGGGGCTGCAACGAGCTTGTGCTTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTAATTTCAGCTCTCATGGTTCTACACTATATGATGATGATGATTACTATGAGGACCATATTTCCTGGGATGAAGATATTTATGGATACGGTTCCGATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

290

Amino Acids

33.26

Weight (kDa)

4.5

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
AciI CCGC 1 cut(s) 676
AcsI RAATTY 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 3 cut(s) 116, 214, 473
AfiI CCNNNNNNNGG 1 cut(s) 265
AflII CTTAAG 1 cut(s) 617
AgsI TTSAA 5 cut(s) 251, 358, 440, 553, 634
AjnI CCWGG 1 cut(s) 833
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 6 cut(s) 391, 492, 616, 691, 754, 780
AluI AGCT 6 cut(s) 391, 492, 616, 691, 754, 780
ApeKI GCWGC 4 cut(s) 365, 489, 607, 681
ApoI RAATTY 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 823
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 823
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 4 cut(s) 352, 501, 594, 668
BccI CCATC 1 cut(s) 860
BceAI ACGGC 2 cut(s) 243, 393
BciT130I CCWGG 1 cut(s) 835
BciVI GTATCC 1 cut(s) 848
BfmI CTRYAG 1 cut(s) 366
BfrI CTTAAG 1 cut(s) 617
BfuI GTATCC 1 cut(s) 848
BglII AGATCT 1 cut(s) 519
BisI GCNGC 4 cut(s) 366, 490, 608, 682
BlsI GCNGC 4 cut(s) 367, 491, 609, 683
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 1 cut(s) 835
Bme18I GGWCC 1 cut(s) 823
BmgT120I GGNCC 1 cut(s) 823
BmiI GGNNCC 1 cut(s) 862
BmrFI CCNGG 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 612
BsaBI GATNNNNATC 2 cut(s) 180, 240
BsaJI CCNNGG 2 cut(s) 511, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse3DI GCAATG 3 cut(s) 77, 398, 594
Bse8I GATNNNNATC 2 cut(s) 180, 240
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 2 cut(s) 511, 834
BseGI GGATG 4 cut(s) 94, 661, 709, 844
BseJI GATNNNNATC 2 cut(s) 180, 240
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 3 cut(s) 77, 398, 594
BseMII CTCAG 1 cut(s) 337
BseXI GCAGC 4 cut(s) 352, 501, 594, 668
BseYI CCCAGC 1 cut(s) 404
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 77
Bsp143I GATC 6 cut(s) 163, 175, 519, 627, 649, 658
BspACI CCGC 1 cut(s) 676
BspCNI CTCAG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 862
BspMAI CTGCAG 1 cut(s) 370
BspTI CTTAAG 1 cut(s) 617
BsrDI GCAATG 3 cut(s) 77, 398, 594
BssECI CCNNGG 2 cut(s) 511, 834
BssMI GATC 6 cut(s) 163, 175, 519, 627, 649, 658
BssT1I CCWWGG 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 4 cut(s) 41, 172, 422, 860
Bst6I CTCTTC 2 cut(s) 55, 246
BstAFI CTTAAG 1 cut(s) 617
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 3 cut(s) 143, 430, 756
BstDEI CTNAG 2 cut(s) 323, 612
BstF5I GGATG 4 cut(s) 94, 661, 709, 844
BstKTI GATC 6 cut(s) 166, 178, 522, 630, 652, 661
BstMBI GATC 6 cut(s) 163, 175, 519, 627, 649, 658
BstMWI GCNNNNNNNGC 2 cut(s) 613, 755
BstNI CCWGG 1 cut(s) 835
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 4 cut(s) 352, 501, 594, 668
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BsuI GTATCC 1 cut(s) 848
BtsCI GGATG 4 cut(s) 94, 661, 709, 844
Cac8I GCNNGC 3 cut(s) 143, 430, 756
Cfr13I GGNCC 1 cut(s) 823
CseI GACGC 1 cut(s) 676
Csp6I GTAC 3 cut(s) 115, 213, 472
CviAII CATG 4 cut(s) 111, 138, 336, 785
CviQI GTAC 3 cut(s) 115, 213, 472
DdeI CTNAG 2 cut(s) 323, 612
DpnI GATC 6 cut(s) 165, 177, 521, 629, 651, 660
DpnII GATC 6 cut(s) 163, 175, 519, 627, 649, 658
Eam1104I CTCTTC 2 cut(s) 55, 246
EarI CTCTTC 2 cut(s) 55, 246
Eco130I CCWWGG 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 833
EcoT14I CCWWGG 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 511
FaeI CATG 4 cut(s) 114, 141, 339, 788
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 110, 137, 335, 784
FauI CCCGC 1 cut(s) 669
Fnu4HI GCNGC 4 cut(s) 366, 490, 608, 682
FokI GGATG 4 cut(s) 101, 668, 716, 851
Fsp4HI GCNGC 4 cut(s) 366, 490, 608, 682
GluI GCNGC 4 cut(s) 366, 490, 608, 682
GsaI CCCAGC 1 cut(s) 408
HgaI GACGC 1 cut(s) 676
Hin1II CATG 4 cut(s) 114, 141, 339, 788
HincII GTYRAC 2 cut(s) 37, 601
HindII GTYRAC 2 cut(s) 37, 601
HindIII AAGCTT 3 cut(s) 389, 614, 752
HinfI GANTC 1 cut(s) 74
HpaI GTTAAC 1 cut(s) 601
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 5 cut(s) 37, 213, 418, 459, 601
Hpy188I TCNGA 2 cut(s) 346, 865
Hpy188III TCNNGA 6 cut(s) 161, 185, 355, 440, 631, 653
Hpy8I GTNNAC 5 cut(s) 37, 213, 418, 459, 601
HpyAV CCTTC 2 cut(s) 144, 390
HpyCH4III ACNGT 4 cut(s) 41, 172, 422, 860
HpyCH4V TGCA 7 cut(s) 105, 275, 368, 428, 534, 566, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 613, 755
HpyF3I CTNAG 2 cut(s) 323, 612
Hsp92II CATG 4 cut(s) 114, 141, 339, 788
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 6 cut(s) 163, 175, 519, 627, 649, 658
LpnPI CCDG 6 cut(s) 127, 174, 310, 418, 820, 847
Lsp1109I GCAGC 4 cut(s) 352, 501, 594, 668
MaeIII GTNAC 2 cut(s) 268, 664
MalI GATC 6 cut(s) 165, 177, 521, 629, 651, 660
MboI GATC 6 cut(s) 163, 175, 519, 627, 649, 658
MfeI CAATTG 3 cut(s) 594, 623, 712
MflI RGATCY 1 cut(s) 519
MluCI AATT 9 cut(s) 26, 435, 447, 463, 496, 594, 623, 712, 772
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 5 cut(s) 16, 25, 137, 724, 814
MseI TTAA 5 cut(s) 222, 282, 386, 600, 618
MspCI CTTAAG 1 cut(s) 617
MspR9I CCNGG 1 cut(s) 835
MunI CAATTG 3 cut(s) 594, 623, 712
MvaI CCWGG 1 cut(s) 835
MwoI GCNNNNNNNGC 2 cut(s) 613, 755
NdeII GATC 6 cut(s) 163, 175, 519, 627, 649, 658
NlaIII CATG 4 cut(s) 114, 141, 339, 788
NlaIV GGNNCC 1 cut(s) 862
NmuCI GTSAC 2 cut(s) 268, 664
PkrI GCNGC 4 cut(s) 367, 491, 609, 683
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 1 cut(s) 862
PspPI GGNCC 1 cut(s) 823
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 519
RsaI GTAC 3 cut(s) 116, 214, 473
RsaNI GTAC 3 cut(s) 115, 213, 472
SaqAI TTAA 5 cut(s) 222, 282, 386, 600, 618
SatI GCNGC 4 cut(s) 366, 490, 608, 682
Sau3AI GATC 6 cut(s) 163, 175, 519, 627, 649, 658
Sau96I GGNCC 1 cut(s) 823
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 835
SetI ASST 8 cut(s) 36, 393, 494, 618, 693, 724, 756, 782
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 823
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 9 cut(s) 26, 435, 447, 463, 496, 594, 623, 712, 772
SsiI CCGC 1 cut(s) 676
SspI AATATT 2 cut(s) 571, 646
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 1 cut(s) 511
TaaI ACNGT 4 cut(s) 41, 172, 422, 860
TaqI TCGA 2 cut(s) 129, 244
TasI AATT 9 cut(s) 26, 435, 447, 463, 496, 594, 623, 712, 772
TatI WGTACW 1 cut(s) 471
Tru1I TTAA 5 cut(s) 222, 282, 386, 600, 618
Tru9I TTAA 5 cut(s) 222, 282, 386, 600, 618
TseFI GTSAC 2 cut(s) 268, 664
TseI GCWGC 4 cut(s) 365, 489, 607, 681
Tsp45I GTSAC 2 cut(s) 268, 664
TspDTI ATGAA 9 cut(s) 24, 62, 126, 210, 324, 387, 597, 753, 855
TspGWI ACGGA 1 cut(s) 216
Vha464I CTTAAG 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 823
XapI RAATTY 1 cut(s) 463
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.