Rh4DG189300

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000637
Physical Location & Seq
Reverse (-)
37343493 .. 37345699
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG189300.1

Sequence Viewer

Length: 825 bp
ATGGAAGATCAACGAATGTGGGAAGACTTAAACACGGACTGCTTGGTGAATATTTTTGGAAGAGTTGGAATGGAGTCACTACTTTTGGATATCCCTTTTGTGTGCAAGTCATGGTACAAAGCAAGCCTCATTCCTTCTTGCTGGCAGTGTATCATTTTTCCTGACTTTTCAGCTGATCAAACTTTTGACTTTAGTCGCCAAGGTGTTGAACCTAATACCATTTGTCAAAGATTTGTTTCTGAATTTCGAATTGATAAGAGTCATTTCTCCTCGACTGCTTTTATGAAGTGTGTCATCAATCATAGCAGAGGAAAAGCTACTTCTATCACACTACCTGCATATTGTACTCAAGAGGCAGTTGAGTTTGTTGCCCATGTATGTCCTGACCTTGTGTTTTTGGATATATCTCGATATTTATTGTTTACCCCATCAAGAAAGCTAATATCAGATCTGATTTGCAAGTGGGAAAATTTGGTGGAGTTATGGTTAAGTTGGAGCTATAATTTAGAGAAGATCCTGTCGCAGATCAGTGTTCATTGCAAGAGTTTTTGTTCTCTGCGTGTGTCTTATGCCTCCATTCATAAAGATGAAGCATTGACAATCACTACATTGGTGCCTAATATTAAGTACTTAAACTTGAGGTCTGCAGATTTTGATCGGGACAGCCTTGTCTTAATACTGAGGAGCTGCAAAAATCTTGTGCTTTTGGATGTCAGAGATTGTGTTGGGTTTAATGAAGCTGATGAGGAAATCTTGAAGCTTTCTTCACATATCAGTCAATTTATGTGTGAGGGTTCGAAAGAAGAATTGTTTATTATACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

274

Amino Acids

31.56

Weight (kDa)

5.3

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 613
AclWI GGATC 1 cut(s) 508
AcsI RAATTY 2 cut(s) 242, 469
AfaI GTAC 3 cut(s) 116, 346, 629
AgsI TTSAA 2 cut(s) 209, 757
AluBI AGCT 7 cut(s) 173, 317, 439, 498, 687, 740, 760
AluI AGCT 7 cut(s) 173, 317, 439, 498, 687, 740, 760
AlwI GGATC 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 687
ApoI RAATTY 2 cut(s) 242, 469
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 2 cut(s) 247, 797
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 674
BccI CCATC 1 cut(s) 436
BclI TGATCA 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 645
BfuAI ACCTGC 1 cut(s) 343
BglII AGATCT 1 cut(s) 448
BisI GCNGC 1 cut(s) 688
BlsI GCNGC 1 cut(s) 689
BmcAI AGTACT 1 cut(s) 629
BmiI GGNNCC 1 cut(s) 615
BoxI GACNNNNGTC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 30
Bpu14I TTCGAA 2 cut(s) 247, 797
BpuEI CTTGAG 2 cut(s) 333, 658
BsaBI GATNNNNATC 1 cut(s) 654
BsaJI CCNNGG 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bse3DI GCAATG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 715
BseJI GATNNNNATC 1 cut(s) 654
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 1 cut(s) 671
BseRI GAGGAG 2 cut(s) 259, 697
BseXI GCAGC 1 cut(s) 674
BshNI GGYRCC 1 cut(s) 613
BslFI GGGAC 1 cut(s) 674
BsmFI GGGAC 1 cut(s) 674
Bsp119I TTCGAA 2 cut(s) 247, 797
Bsp143I GATC 6 cut(s) 7, 175, 448, 513, 525, 655
BspCNI CTCAG 1 cut(s) 672
BspLI GGNNCC 1 cut(s) 615
BspMAI CTGCAG 1 cut(s) 649
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 508
BspT104I TTCGAA 2 cut(s) 247, 797
BspT107I GGYRCC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 6 cut(s) 7, 175, 448, 513, 525, 655
BssT1I CCWWGG 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 55
BstBI TTCGAA 2 cut(s) 247, 797
BstC8I GCNNGC 2 cut(s) 124, 143
BstDEI CTNAG 1 cut(s) 680
BstF5I GGATG 1 cut(s) 715
BstKTI GATC 6 cut(s) 10, 178, 451, 516, 528, 658
BstMBI GATC 6 cut(s) 7, 175, 448, 513, 525, 655
BstPAI GACNNNNGTC 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 674
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 448, 513
BstYI RGATCY 2 cut(s) 448, 513
BtsCI GGATG 1 cut(s) 715
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 152, 535
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 124, 143
Csp6I GTAC 3 cut(s) 115, 345, 628
CspCI CAANNNNNGTGG 1 cut(s) 34
CviAII CATG 3 cut(s) 111, 374, 822
CviJI RGCY 9 cut(s) 126, 173, 317, 439, 498, 666, 687, 740, 760
CviKI_1 RGCY 9 cut(s) 126, 173, 317, 439, 498, 666, 687, 740, 760
CviQI GTAC 3 cut(s) 115, 345, 628
DdeI CTNAG 1 cut(s) 680
DpnI GATC 6 cut(s) 9, 177, 450, 515, 527, 657
DpnII GATC 6 cut(s) 7, 175, 448, 513, 525, 655
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 199
Eco32I GATATC 1 cut(s) 91
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 3 cut(s) 114, 377, 825
FaqI GGGAC 1 cut(s) 674
FatI CATG 3 cut(s) 110, 373, 821
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 688
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 1 cut(s) 688
GluI GCNGC 1 cut(s) 688
Hin1II CATG 3 cut(s) 114, 377, 825
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 2 cut(s) 74, 259
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 4 cut(s) 241, 448, 453, 716
Hpy188III TCNNGA 7 cut(s) 161, 350, 383, 408, 432, 659, 754
Hpy8I GTNNAC 1 cut(s) 423
HpyAV CCTTC 1 cut(s) 144
HpyCH4V TGCA 6 cut(s) 105, 338, 459, 540, 647, 690
HpyF3I CTNAG 1 cut(s) 680
Hsp92II CATG 3 cut(s) 114, 377, 825
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 6 cut(s) 7, 175, 448, 513, 525, 655
LmnI GCTCC 2 cut(s) 495, 684
LpnPI CCDG 5 cut(s) 127, 174, 348, 396, 530
Lsp1109I GCAGC 1 cut(s) 674
MaeIII GTNAC 1 cut(s) 75
MalI GATC 6 cut(s) 9, 177, 450, 515, 527, 657
MboI GATC 6 cut(s) 7, 175, 448, 513, 525, 655
MboII GAAGA 6 cut(s) 17, 35, 72, 523, 756, 815
MflI RGATCY 2 cut(s) 448, 513
MluCI AATT 6 cut(s) 242, 249, 469, 502, 779, 806
MlyI GAGTC 2 cut(s) 83, 268
MmeI TCCRAC 2 cut(s) 46, 473
MnlI CCTC 9 cut(s) 137, 280, 302, 346, 583, 633, 675, 739, 784
MseI TTAA 6 cut(s) 29, 488, 624, 632, 674, 732
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 173
NdeII GATC 6 cut(s) 7, 175, 448, 513, 525, 655
NlaIII CATG 3 cut(s) 114, 377, 825
NlaIV GGNNCC 1 cut(s) 615
NmuCI GTSAC 1 cut(s) 75
NspV TTCGAA 2 cut(s) 247, 797
PkrI GCNGC 1 cut(s) 689
PleI GAGTC 2 cut(s) 82, 267
PpsI GAGTC 2 cut(s) 82, 267
PshAI GACNNNNGTC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 615
PstI CTGCAG 1 cut(s) 649
PsuI RGATCY 2 cut(s) 448, 513
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 3 cut(s) 116, 346, 629
RsaNI GTAC 3 cut(s) 115, 345, 628
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 6 cut(s) 29, 488, 624, 632, 674, 732
SatI GCNGC 1 cut(s) 688
Sau3AI GATC 6 cut(s) 7, 175, 448, 513, 525, 655
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 2 cut(s) 83, 268
SfcI CTRYAG 1 cut(s) 645
SfuI TTCGAA 2 cut(s) 247, 797
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 2 cut(s) 348, 637
SmoI CTYRAG 2 cut(s) 348, 637
Sse9I AATT 6 cut(s) 242, 249, 469, 502, 779, 806
SspI AATATT 2 cut(s) 52, 622
StyI CCWWGG 1 cut(s) 199
TaqI TCGA 4 cut(s) 247, 272, 409, 797
TasI AATT 6 cut(s) 242, 249, 469, 502, 779, 806
TatI WGTACW 2 cut(s) 344, 627
Tru1I TTAA 6 cut(s) 29, 488, 624, 632, 674, 732
Tru9I TTAA 6 cut(s) 29, 488, 624, 632, 674, 732
TscAI CASTG 2 cut(s) 152, 535
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 1 cut(s) 687
Tsp45I GTSAC 1 cut(s) 75
TspDTI ATGAA 5 cut(s) 299, 524, 569, 603, 750
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 152, 535
XapI RAATTY 2 cut(s) 242, 469
ZrmI AGTACT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.