Rorug04G0131900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000637
Physical Location & Seq
Reverse (-)
21106960 .. 21108048
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0131900.1

Sequence Viewer

Length: 1089 bp
ATGAATGAATATGATGGCATGTCGCCGATCAGTTCGGTGAAGATGAACTCTTTATTCTTCTGGGTAAGGATCTCCAACATCCCACTTGCGTTTGAGGACCCAGACATGATCCAGGCTATTGCTTCTGTGGCGGGAAAGTTCTTAGAGCTGGATGACAAACTTTTCGACACTGTGGGTAAAGTTAGGGTTCGGGTTGCTCATGAATTGTCCAAACCCTTCTTTACGCTGAAAACGCTCCGTCTTGCTCCTGGGATTGAAGCAGAGATATCCTTCTTCTTCGAAAACTTGGTAGGTATGTGCAACTCCTACCATTTTCTGATGCACGGTGATAATGGGTGTCCGGTTAGTGGGATGGATACTAGCCATACTGGGGTTCAAGCCATTGTTGATAAGAGAGTGGAGATCCCTGCTCCATCATTGAGTTTTAATGCAGGTACATTCCTAAACGGCATGTTTCGTTTCCAGGGGGTGCAAACACCGGTCCTTCCACCGGTCAACAGGGCTCTTTTTAGTCATGACACTCTTGGCCGTAAACCTATAATCCTGCGGGAGAAGTTGCTTCCCAACAAACTGGATAATTCACTGGCCTTAGTCCCAGTCTCTGATGATATTACTGGGATTGAACCTATTGTGCCGGCTCTCATTGAAGATGATAAAGATACGGGGAAGTCTGATGAGAAGTTGGAGAGTGACACAGATGTTCCTGCCATGGTGGAGCCAAGAATTGAGAAGAGGGTATGCCCTCCCACCTCTGAGGCCTCTCCCAAAAAGCTAAAGATTTTGCTCCCAGACTTGTTCAAACAAGGGGATATGCATGATGCTCCAGCAAAGAAGTTGAAGACCCCATGTTTCCCGACTAAGTTTTCAGCACGGTCTCTAGGACTCCTGGCAGCCCCGGGCAGCATTCTGGTGCCAAAAGAGCTGATCGTGGCAGGTACTACGAAGCCACCAAAGAAGAGAGGAAGGCCACTTGGATCAAAAAATAAAAATCCACCCAAAGAAAAGAAGATTGCTGCTGCACAAGCAACTTGTTTGGAGTACCTTACTAAGCCTCCTAGCCCTAGTGAGAAGGGCAAGGAGAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

362

Amino Acids

39.67

Weight (kDa)

8.9

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 422, 923
AccB1I GGYRCC 1 cut(s) 910
AciI CCGC 2 cut(s) 131, 547
AclWI GGATC 4 cut(s) 77, 103, 397, 982
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 1 cut(s) 1083
AfaI GTAC 3 cut(s) 436, 937, 1040
AfiI CCNNNNNNNGG 3 cut(s) 347, 370, 490
AgeI ACCGGT 2 cut(s) 478, 490
AgsI TTSAA 6 cut(s) 257, 377, 623, 647, 799, 838
AjnI CCWGG 4 cut(s) 111, 247, 462, 885
AluBI AGCT 3 cut(s) 148, 772, 922
AluI AGCT 3 cut(s) 148, 772, 922
Alw26I GTCTC 2 cut(s) 604, 879
AlwI GGATC 4 cut(s) 77, 103, 397, 982
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 895
AoxI GGCC 4 cut(s) 526, 585, 756, 965
ApeKI GCWGC 4 cut(s) 890, 900, 1013, 1016
ApoI RAATTY 1 cut(s) 1083
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsiGI ACCGGT 2 cut(s) 478, 490
AspS9I GGNCC 2 cut(s) 97, 481
AsuC2I CCSGG 2 cut(s) 896, 897
AsuHPI GGTGA 2 cut(s) 49, 338
AsuII TTCGAA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 2 cut(s) 97, 481
BanI GGYRCC 1 cut(s) 910
BanII GRGCYC 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 845
BbvI GCAGC 4 cut(s) 902, 912, 1000, 1003
BccI CCATC 3 cut(s) 8, 346, 421
BceAI ACGGC 2 cut(s) 463, 513
BciT130I CCWGG 4 cut(s) 113, 249, 464, 887
BciVI GTATCC 1 cut(s) 349
BcnI CCSGG 2 cut(s) 896, 897
BcoDI GTCTC 2 cut(s) 604, 879
BfaI CTAG 4 cut(s) 360, 878, 1056, 1062
BfuAI ACCTGC 2 cut(s) 422, 923
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 4 cut(s) 891, 901, 1014, 1017
BlsI GCNGC 4 cut(s) 892, 902, 1015, 1018
Bme1390I CCNGG 6 cut(s) 113, 249, 464, 887, 896, 897
Bme18I GGWCC 2 cut(s) 97, 481
BmeT110I CYCGRG 1 cut(s) 895
BmgT120I GGNCC 2 cut(s) 97, 481
BmiI GGNNCC 3 cut(s) 99, 717, 912
BmrFI CCNGG 6 cut(s) 113, 249, 464, 887, 896, 897
BmrI ACTGGG 3 cut(s) 378, 590, 624
BmsI GCATC 2 cut(s) 309, 808
BmuI ACTGGG 3 cut(s) 378, 590, 624
BpiI GAAGAC 1 cut(s) 845
BpmI CTGGAG 1 cut(s) 807
Bpu14I TTCGAA 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 896, 897
BsaI GGTCTC 1 cut(s) 879
BsaJI CCNNGG 5 cut(s) 248, 463, 708, 894, 895
BsaWI WCCGGW 3 cut(s) 340, 478, 490
BsaXI ACNNNNNCTCC 2 cut(s) 1036, 1066
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 370, 490
Bse118I RCCGGY 3 cut(s) 478, 490, 634
Bse1I ACTGG 5 cut(s) 373, 576, 588, 596, 619
BseBI CCWGG 4 cut(s) 113, 249, 464, 887
BseDI CCNNGG 5 cut(s) 248, 463, 708, 894, 895
BseGI GGATG 3 cut(s) 78, 157, 357
BseLI CCNNNNNNNGG 3 cut(s) 347, 370, 490
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 5 cut(s) 373, 576, 588, 596, 619
BseXI GCAGC 4 cut(s) 902, 912, 1000, 1003
BsgI GTGCAG 1 cut(s) 1002
BshFI GGCC 4 cut(s) 528, 587, 758, 967
BshNI GGYRCC 1 cut(s) 910
BshTI ACCGGT 2 cut(s) 478, 490
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 5 cut(s) 341, 479, 491, 635, 896
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 3 cut(s) 347, 370, 490
BsmAI GTCTC 2 cut(s) 604, 879
BsmFI GGGAC 1 cut(s) 578
BsmI GAATGC 1 cut(s) 903
BsnI GGCC 4 cut(s) 528, 587, 758, 967
Bso31I GGTCTC 1 cut(s) 879
BsoBI CYCGRG 1 cut(s) 895
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 6 cut(s) 27, 69, 108, 402, 924, 974
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 2 cut(s) 131, 547
BspANI GGCC 4 cut(s) 528, 587, 758, 967
BspCNI CTCAG 1 cut(s) 745
BspHI TCATGA 2 cut(s) 199, 514
BspLI GGNNCC 3 cut(s) 99, 717, 912
BspMI ACCTGC 2 cut(s) 422, 923
BspPI GGATC 4 cut(s) 77, 103, 397, 982
BspT104I TTCGAA 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 910
BspTNI GGTCTC 1 cut(s) 879
BsrFI RCCGGY 3 cut(s) 478, 490, 634
BsrI ACTGG 5 cut(s) 373, 576, 588, 596, 619
BssAI RCCGGY 3 cut(s) 478, 490, 634
BssECI CCNNGG 5 cut(s) 248, 463, 708, 894, 895
BssMI GATC 6 cut(s) 27, 69, 108, 402, 924, 974
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 4 cut(s) 113, 249, 464, 887
Bst4CI ACNGT 3 cut(s) 172, 326, 873
Bst6I CTCTTC 2 cut(s) 725, 950
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 5 cut(s) 142, 589, 753, 858, 1047
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 3 cut(s) 78, 157, 357
BstKTI GATC 6 cut(s) 30, 72, 111, 405, 927, 977
BstMAI GTCTC 2 cut(s) 604, 879
BstMBI GATC 6 cut(s) 27, 69, 108, 402, 924, 974
BstMWI GCNNNNNNNGC 4 cut(s) 128, 232, 919, 1022
BstNI CCWGG 4 cut(s) 113, 249, 464, 887
BstNSI RCATGY 2 cut(s) 22, 454
BstSCI CCNGG 6 cut(s) 111, 247, 462, 885, 894, 895
BstV1I GCAGC 4 cut(s) 902, 912, 1000, 1003
BstV2I GAAGAC 1 cut(s) 845
BstX2I RGATCY 2 cut(s) 69, 402
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 2 cut(s) 69, 402
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 4 cut(s) 528, 587, 758, 967
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 3 cut(s) 78, 157, 357
BtsIMutI CAGTG 2 cut(s) 168, 581
BveI ACCTGC 2 cut(s) 422, 923
Cac8I GCNNGC 1 cut(s) 636
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 2 cut(s) 199, 514
Cfr10I RCCGGY 3 cut(s) 478, 490, 634
Cfr13I GGNCC 2 cut(s) 97, 481
Cfr9I CCCGGG 1 cut(s) 895
Csp6I GTAC 3 cut(s) 435, 936, 1039
CspAI ACCGGT 2 cut(s) 478, 490
CviAII CATG 8 cut(s) 19, 106, 200, 451, 515, 709, 815, 846
CviQI GTAC 3 cut(s) 435, 936, 1039
DdeI CTNAG 5 cut(s) 142, 589, 753, 858, 1047
DpnI GATC 6 cut(s) 29, 71, 110, 404, 926, 976
DpnII GATC 6 cut(s) 27, 69, 108, 402, 924, 974
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 725, 950
EarI CTCTTC 2 cut(s) 725, 950
Eco130I CCWWGG 1 cut(s) 708
Eco147I AGGCCT 1 cut(s) 758
Eco24I GRGCYC 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 879
Eco32I GATATC 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 97, 481
Eco88I CYCGRG 1 cut(s) 895
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 4 cut(s) 111, 247, 462, 885
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 708
EcoT22I ATGCAT 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 8 cut(s) 22, 109, 203, 454, 518, 712, 818, 849
FaqI GGGAC 1 cut(s) 578
FatI CATG 8 cut(s) 18, 105, 199, 450, 514, 708, 814, 845
FauI CCCGC 2 cut(s) 124, 540
Fnu4HI GCNGC 4 cut(s) 891, 901, 1014, 1017
FokI GGATG 3 cut(s) 65, 164, 364
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 4 cut(s) 891, 901, 1014, 1017
FspBI CTAG 4 cut(s) 360, 878, 1056, 1062
GluI GCNGC 4 cut(s) 891, 901, 1014, 1017
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 4 cut(s) 528, 587, 758, 967
HapII CCGG 5 cut(s) 341, 479, 491, 635, 896
Hin1II CATG 8 cut(s) 22, 109, 203, 454, 518, 712, 818, 849
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 1 cut(s) 882
HpaII CCGG 5 cut(s) 341, 479, 491, 635, 896
HphI GGTGA 2 cut(s) 49, 338
Hpy166II GTNNAC 2 cut(s) 496, 533
Hpy188I TCNGA 4 cut(s) 318, 604, 673, 754
Hpy188III TCNNGA 3 cut(s) 200, 515, 853
Hpy8I GTNNAC 2 cut(s) 496, 533
HpyAV CCTTC 5 cut(s) 226, 280, 494, 957, 1063
HpyCH4III ACNGT 3 cut(s) 172, 326, 873
HpyCH4V TGCA 6 cut(s) 300, 322, 431, 472, 814, 1019
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 232, 919, 1022
HpyF3I CTNAG 5 cut(s) 142, 589, 753, 858, 1047
Hsp92II CATG 8 cut(s) 22, 109, 203, 454, 518, 712, 818, 849
KroI GCCGGC 1 cut(s) 634
KroNI GCCGGC 1 cut(s) 636
Kzo9I GATC 6 cut(s) 27, 69, 108, 402, 924, 974
LmnI GCTCC 6 cut(s) 240, 250, 415, 715, 789, 826
Lsp1109I GCAGC 4 cut(s) 902, 912, 1000, 1003
LweI GCATC 2 cut(s) 309, 808
MaeI CTAG 4 cut(s) 360, 878, 1056, 1062
MaeIII GTNAC 1 cut(s) 689
MalI GATC 6 cut(s) 29, 71, 110, 404, 926, 976
MboI GATC 6 cut(s) 27, 69, 108, 402, 924, 974
MboII GAAGA 9 cut(s) 49, 52, 265, 268, 659, 742, 850, 967, 1018
MflI RGATCY 2 cut(s) 69, 402
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 4 cut(s) 203, 577, 723, 1083
MlyI GAGTC 1 cut(s) 876
MmeI TCCRAC 2 cut(s) 99, 663
MnlI CCTC 8 cut(s) 88, 726, 748, 753, 760, 769, 953, 1062
Mph1103I ATGCAT 1 cut(s) 816
MroNI GCCGGC 1 cut(s) 634
MseI TTAA 2 cut(s) 426, 1087
MslI CAYNNNNRTG 1 cut(s) 908
MspI CCGG 5 cut(s) 341, 479, 491, 635, 896
MspR9I CCNGG 6 cut(s) 113, 249, 464, 887, 896, 897
Mva1269I GAATGC 1 cut(s) 903
MvaI CCWGG 4 cut(s) 113, 249, 464, 887
MwoI GCNNNNNNNGC 4 cut(s) 128, 232, 919, 1022
NaeI GCCGGC 1 cut(s) 636
NciI CCSGG 2 cut(s) 896, 897
NcoI CCATGG 1 cut(s) 708
NdeII GATC 6 cut(s) 27, 69, 108, 402, 924, 974
NgoMIV GCCGGC 1 cut(s) 634
NlaIII CATG 8 cut(s) 22, 109, 203, 454, 518, 712, 818, 849
NlaIV GGNNCC 3 cut(s) 99, 717, 912
NmuCI GTSAC 1 cut(s) 689
NsiI ATGCAT 1 cut(s) 816
NspI RCATGY 2 cut(s) 22, 454
NspV TTCGAA 1 cut(s) 279
PagI TCATGA 2 cut(s) 199, 514
PceI AGGCCT 1 cut(s) 758
PctI GAATGC 1 cut(s) 903
PdiI GCCGGC 1 cut(s) 636
PinAI ACCGGT 2 cut(s) 478, 490
PkrI GCNGC 4 cut(s) 892, 902, 1015, 1018
PleI GAGTC 1 cut(s) 876
PpsI GAGTC 1 cut(s) 876
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 4 cut(s) 111, 247, 462, 885
PspGI CCWGG 4 cut(s) 111, 247, 462, 885
PspN4I GGNNCC 3 cut(s) 99, 717, 912
PspPI GGNCC 2 cut(s) 97, 481
PspPPI RGGWCCY 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 2 cut(s) 69, 402
RsaI GTAC 3 cut(s) 436, 937, 1040
RsaNI GTAC 3 cut(s) 435, 936, 1039
RseI CAYNNNNRTG 1 cut(s) 908
SaqAI TTAA 2 cut(s) 426, 1087
SatI GCNGC 4 cut(s) 891, 901, 1014, 1017
Sau3AI GATC 6 cut(s) 27, 69, 108, 402, 924, 974
Sau96I GGNCC 2 cut(s) 97, 481
SchI GAGTC 1 cut(s) 876
ScrFI CCNGG 6 cut(s) 113, 249, 464, 887, 896, 897
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 2 cut(s) 309, 808
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 2 cut(s) 97, 481
SmaI CCCGGG 1 cut(s) 897
SmiMI CAYNNNNRTG 1 cut(s) 908
Sse9I AATT 4 cut(s) 203, 577, 723, 1083
SseBI AGGCCT 1 cut(s) 758
SsiI CCGC 2 cut(s) 131, 547
SspMI CTAG 4 cut(s) 360, 878, 1056, 1062
StuI AGGCCT 1 cut(s) 758
StyD4I CCNGG 6 cut(s) 111, 247, 462, 885, 894, 895
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 3 cut(s) 172, 326, 873
TaqI TCGA 2 cut(s) 165, 279
TasI AATT 4 cut(s) 203, 577, 723, 1083
Tru1I TTAA 2 cut(s) 426, 1087
Tru9I TTAA 2 cut(s) 426, 1087
TscAI CASTG 2 cut(s) 175, 588
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 4 cut(s) 890, 900, 1013, 1016
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 4 cut(s) 17, 21, 59, 216
TspGWI ACGGA 1 cut(s) 227
TspMI CCCGGG 1 cut(s) 895
TspRI CASTG 2 cut(s) 175, 588
VpaK11BI GGWCC 2 cut(s) 97, 481
XapI RAATTY 1 cut(s) 1083
XceI RCATGY 2 cut(s) 22, 454
XmaI CCCGGG 1 cut(s) 895
XspI CTAG 4 cut(s) 360, 878, 1056, 1062
Zsp2I ATGCAT 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.