Prupe.1G158200_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000637
Physical Location & Seq
Forward (+)
12547604 .. 12549657
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G158200.3

Sequence Viewer

Length: 936 bp
ATGGCTTGTCTTCCTGCTTCCATTTGTGTAGGAATTCCCGATCCTTTTGCTTTTCATTGCCTTTATCTTACATTTAAGATGGAGAATGAACGAAGATGGGAGGGCTTAAATGTGGACTGTTTGGTGAATGTTTTTGGAAGAGTTGGGATGCAGTCACTACTCTTGGATGTTCCCTTTGTGTGCAAGTCATGGTACACAGCATCCCTGAGTCCTTCATGCTGGGAATGTCTCATTTTTCCTGGTGGTTTTGATGGCTTTGATCTTCCAACTCACGATCTTTGGAGTTCTGAGGGTGAACTTAGAACCTTTATGGATAGGTTTCGATGTATATATCGAATTGATGAGGATCGTTTCTCTCTCACTGCATTTCTAAAGGTTGTTGTCAATCGTAGCAGAGGGCATGCTACTGTTGTCCGGCTACCTGGATTTTGTTCCGCGGAAGCAATGAAATATGTTGCAGATGTGTGTCCTCGCCTGAAGGCTCTGTACGTTGACAAAATGATTCCTGAACTAATTGGAAAGTGGAAAGATTTGGAGGAGTTGTTCTTGGGGAGCAGCATTGGTGTTGAGAAAACCCTGTCAGAGATCGGCATTCACTGCAAGAATTTTTGGCGTTTGCATGTGGGTAATGCCTATATATGTAATACTGAGGCATTGGCAATCGTCAAGTTGGTGCCTAATATTAAGCACTTGAGCTTGAGGCAGGCAGACATTGAACGGGATAATCTTGTCACAATACTACAGGGCTGCAAGGAGCTTGTGGCTTTGGATGTCAGTGATTGTAGAGGTTTTGACGAGGGCGATGATGAAATATATAAGCTTGCTTCTCATATTACTAATTTCAGGTGTGAGGGTTCCTCTTCTAAATATTCTTCTGATTCCGATGATAACCTTGATCGAAATCCTGTCTATTTTTTTGGATATGAATCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

312

Amino Acids

35.29

Weight (kDa)

5.18

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 673
AccII CGCG 1 cut(s) 437
AciI CCGC 2 cut(s) 435, 437
AclWI GGATC 2 cut(s) 35, 354
AcsI RAATTY 2 cut(s) 33, 604
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 2 cut(s) 194, 488
AgsI TTSAA 1 cut(s) 716
AjnI CCWGG 2 cut(s) 238, 421
AloI GAACNNNNNNTCC 2 cut(s) 527, 559
AluBI AGCT 3 cut(s) 696, 757, 820
AluI AGCT 3 cut(s) 696, 757, 820
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 2 cut(s) 35, 354
ApeKI GCWGC 2 cut(s) 555, 747
ApoI RAATTY 2 cut(s) 33, 604
AsuHPI GGTGA 2 cut(s) 136, 305
BanI GGYRCC 1 cut(s) 673
BarI GAAGNNNNNNTAC 2 cut(s) 470, 502
BbsI GAAGAC 1 cut(s) 2
BbvI GCAGC 2 cut(s) 567, 734
BccI CCATC 3 cut(s) 73, 90, 245
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 2 cut(s) 240, 423
BcoDI GTCTC 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 740
BisI GCNGC 2 cut(s) 556, 748
BlsI GCNGC 2 cut(s) 557, 749
Bme1390I CCNGG 2 cut(s) 240, 423
BmiI GGNNCC 2 cut(s) 675, 856
BmrFI CCNGG 2 cut(s) 240, 423
BmsI GCATC 2 cut(s) 138, 209
BpiI GAAGAC 1 cut(s) 2
BplI GAGNNNNNCTC 2 cut(s) 842, 874
BpuEI CTTGAG 2 cut(s) 712, 718
BsaBI GATNNNNATC 3 cut(s) 345, 900, 925
BsaJI CCNNGG 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bse3DI GCAATG 2 cut(s) 55, 450
Bse8I GATNNNNATC 3 cut(s) 345, 900, 925
BseBI CCWGG 2 cut(s) 240, 423
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 4 cut(s) 153, 172, 200, 775
BseJI GATNNNNATC 3 cut(s) 345, 900, 925
BseMI GCAATG 2 cut(s) 55, 450
BseMII CTCAG 3 cut(s) 197, 279, 639
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 2 cut(s) 567, 734
BseYI CCCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 437
BshNI GGYRCC 1 cut(s) 673
BsiSI CCGG 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 591
Bsp143I GATC 6 cut(s) 40, 259, 274, 346, 585, 895
BspACI CCGC 2 cut(s) 435, 437
BspCNI CTCAG 3 cut(s) 198, 280, 640
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 675, 856
BspPI GGATC 2 cut(s) 35, 354
BspT107I GGYRCC 1 cut(s) 673
BsrDI GCAATG 2 cut(s) 55, 450
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 6 cut(s) 40, 259, 274, 346, 585, 895
Bst2UI CCWGG 2 cut(s) 240, 423
Bst4CI ACNGT 2 cut(s) 119, 409
Bst6I CTCTTC 2 cut(s) 133, 865
BstAPI GCANNNNNTGC 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 402, 705, 822
BstDEI CTNAG 4 cut(s) 206, 288, 299, 648
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 4 cut(s) 153, 172, 200, 775
BstFNI CGCG 1 cut(s) 437
BstKTI GATC 6 cut(s) 43, 262, 277, 349, 588, 898
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 6 cut(s) 40, 259, 274, 346, 585, 895
BstMWI GCNNNNNNNGC 1 cut(s) 597
BstNI CCWGG 2 cut(s) 240, 423
BstNSI RCATGY 2 cut(s) 404, 623
BstSCI CCNGG 2 cut(s) 238, 421
BstSFI CTRYAG 1 cut(s) 740
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 2 cut(s) 567, 734
BstV2I GAAGAC 1 cut(s) 2
BtgI CCRYGG 1 cut(s) 435
BtgZI GCGATG 1 cut(s) 816
BtsCI GGATG 4 cut(s) 153, 172, 200, 775
BtsI GCAGTG 2 cut(s) 360, 595
BtsIMutI CAGTG 3 cut(s) 360, 595, 781
Cac8I GCNNGC 3 cut(s) 402, 705, 822
Cfr42I CCGCGG 1 cut(s) 438
Csp6I GTAC 2 cut(s) 193, 487
CviAII CATG 4 cut(s) 189, 216, 401, 620
CviQI GTAC 2 cut(s) 193, 487
DdeI CTNAG 4 cut(s) 206, 288, 299, 648
DpnI GATC 6 cut(s) 42, 261, 276, 348, 587, 897
DpnII GATC 6 cut(s) 40, 259, 274, 346, 585, 895
Eam1104I CTCTTC 2 cut(s) 133, 865
EarI CTCTTC 2 cut(s) 133, 865
Eco57I CTGAAG 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 33
EcoRII CCWGG 2 cut(s) 238, 421
FaeI CATG 4 cut(s) 192, 219, 404, 623
FatI CATG 4 cut(s) 188, 215, 400, 619
Fnu4HI GCNGC 2 cut(s) 556, 748
FokI GGATG 4 cut(s) 160, 179, 187, 782
Fsp4HI GCNGC 2 cut(s) 556, 748
GluI GCNGC 2 cut(s) 556, 748
GsaI CCCAGC 1 cut(s) 223
HapII CCGG 1 cut(s) 415
Hin1II CATG 4 cut(s) 192, 219, 404, 623
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 4 cut(s) 208, 502, 878, 926
HpaII CCGG 1 cut(s) 415
HphI GGTGA 2 cut(s) 136, 305
Hpy166II GTNNAC 4 cut(s) 115, 195, 296, 493
Hpy188I TCNGA 5 cut(s) 289, 583, 877, 883, 931
Hpy188III TCNNGA 3 cut(s) 38, 272, 506
Hpy8I GTNNAC 4 cut(s) 115, 195, 296, 493
HpyAV CCTTC 2 cut(s) 222, 472
HpyCH4III ACNGT 2 cut(s) 119, 409
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 7 cut(s) 151, 183, 365, 458, 600, 619, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 597
HpyF3I CTNAG 4 cut(s) 206, 288, 299, 648
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 4 cut(s) 192, 219, 404, 623
KspI CCGCGG 1 cut(s) 438
Kzo9I GATC 6 cut(s) 40, 259, 274, 346, 585, 895
LmnI GCTCC 2 cut(s) 552, 754
Lsp1109I GCAGC 2 cut(s) 567, 734
LweI GCATC 2 cut(s) 138, 209
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 153, 730
MalI GATC 6 cut(s) 42, 261, 276, 348, 587, 897
MboI GATC 6 cut(s) 40, 259, 274, 346, 585, 895
MboII GAAGA 5 cut(s) 105, 150, 254, 852, 864
MluCI AATT 5 cut(s) 33, 336, 513, 604, 838
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 290
MseI TTAA 4 cut(s) 75, 107, 684, 934
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 2 cut(s) 240, 423
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 2 cut(s) 240, 423
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 597
NdeII GATC 6 cut(s) 40, 259, 274, 346, 585, 895
NlaIII CATG 4 cut(s) 192, 219, 404, 623
NlaIV GGNNCC 2 cut(s) 675, 856
NmuCI GTSAC 2 cut(s) 153, 730
NspI RCATGY 2 cut(s) 404, 623
PaeI GCATGC 1 cut(s) 404
PctI GAATGC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 502, 878, 926
PkrI GCNGC 2 cut(s) 557, 749
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 238, 421
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 2 cut(s) 238, 421
PspN4I GGNNCC 2 cut(s) 675, 856
RsaI GTAC 2 cut(s) 194, 488
RsaNI GTAC 2 cut(s) 193, 487
SacII CCGCGG 1 cut(s) 438
SaqAI TTAA 4 cut(s) 75, 107, 684, 934
SatI GCNGC 2 cut(s) 556, 748
Sau3AI GATC 6 cut(s) 40, 259, 274, 346, 585, 895
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 240, 423
SfaNI GCATC 2 cut(s) 138, 209
SfcI CTRYAG 1 cut(s) 740
Sfr303I CCGCGG 1 cut(s) 438
SgrBI CCGCGG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 691, 697
SmoI CTYRAG 2 cut(s) 691, 697
SphI GCATGC 1 cut(s) 404
Sse9I AATT 5 cut(s) 33, 336, 513, 604, 838
SsiI CCGC 2 cut(s) 435, 437
SspI AATATT 2 cut(s) 682, 869
StyD4I CCNGG 2 cut(s) 238, 421
TaaI ACNGT 2 cut(s) 119, 409
TaiI ACGT 1 cut(s) 492
TaqI TCGA 3 cut(s) 322, 334, 898
TasI AATT 5 cut(s) 33, 336, 513, 604, 838
TfiI GAWTC 3 cut(s) 502, 878, 926
Tru1I TTAA 4 cut(s) 75, 107, 684, 934
Tru9I TTAA 4 cut(s) 75, 107, 684, 934
TscAI CASTG 3 cut(s) 367, 602, 781
TseFI GTSAC 2 cut(s) 153, 730
TseI GCWGC 2 cut(s) 555, 747
Tsp45I GTSAC 2 cut(s) 153, 730
TspDTI ATGAA 5 cut(s) 44, 102, 204, 461, 822
TspRI CASTG 3 cut(s) 367, 602, 781
XapI RAATTY 2 cut(s) 33, 604
XceI RCATGY 2 cut(s) 404, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.