Rmu_co8247483.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8247483.1
OG0000637
Physical Location & Seq
Forward (+)
1 .. 628
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8247483.1_g000001.1.cds

Sequence Viewer

Length: 556 bp
gtgccctaaacttgtgattttgagtttaccaagatgtttgttgtggaaaaaagacatcaatcttgaatcgattggcaagttcaagtacttgtatttgttgtcattgggcagctgcgataaattggacagagttcttgcagtagtcagcaaacggtgcaagttgttttctcttttaacactgtctaatgcccaaattggtaaagaagaggttatggcaattgtcaacttagtccctgatattaagcgcctgagcttgaatagggcacaaatcgatcgggataatcttatcatattactgaagggttgcaaaaaactttcgttcttggaggccgaggattgcattggtttcaatgagggtgatgatgaaatagcagagctggcttctcatatcagtaaattttgctgtgaaggatctaaagagcgcattgaatttccatttgatttttctgaatttcatctttcaccattaacggaagattctgtcatagatttttcaatatttgcagaggttgatggcgagggagagggtgatattgaagaaagtgttgaaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

184

Amino Acids

20.66

Weight (kDa)

4.72

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 3 cut(s) 396, 429, 450
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 1 cut(s) 87
AgsI TTSAA 8 cut(s) 66, 83, 257, 350, 429, 496, 537, 549
AluBI AGCT 3 cut(s) 112, 253, 377
AluI AGCT 3 cut(s) 112, 253, 377
AlwI GGATC 1 cut(s) 419
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 109, 112
ApoI RAATTY 3 cut(s) 396, 429, 450
AspLEI GCGC 2 cut(s) 247, 424
AsuHPI GGTGA 3 cut(s) 369, 454, 540
BaeGI GKGCMC 2 cut(s) 6, 266
BbvI GCAGC 2 cut(s) 99, 121
BccI CCATC 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 2 cut(s) 110, 113
BlsI GCNGC 2 cut(s) 111, 114
BmcAI AGTACT 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 249
Bsa29I ATCGAT 2 cut(s) 69, 271
BsaJI CCNNGG 1 cut(s) 331
BseCI ATCGAT 2 cut(s) 69, 271
BseDI CCNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 240
BseSI GKGCMC 2 cut(s) 6, 266
BseXI GCAGC 2 cut(s) 99, 121
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 1 cut(s) 330
BshVI ATCGAT 2 cut(s) 69, 271
BsiEI CGRYCG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 6, 266
Bsp143I GATC 2 cut(s) 272, 411
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 241
BspDI ATCGAT 2 cut(s) 69, 271
BspPI GGATC 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 272, 411
Bst4CI ACNGT 2 cut(s) 154, 181
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 2 cut(s) 227, 249
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 2 cut(s) 247, 424
BstKTI GATC 2 cut(s) 275, 414
BstMBI GATC 2 cut(s) 272, 411
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 2 cut(s) 154, 378
BstSLI GKGCMC 2 cut(s) 6, 266
BstV1I GCAGC 2 cut(s) 99, 121
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
Bsu15I ATCGAT 2 cut(s) 69, 271
BsuRI GGCC 1 cut(s) 330
BsuTUI ATCGAT 2 cut(s) 69, 271
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 379
CfoI GCGC 2 cut(s) 247, 424
ClaI ATCGAT 2 cut(s) 69, 271
Csp6I GTAC 1 cut(s) 86
CviJI RGCY 5 cut(s) 112, 253, 330, 377, 381
CviKI_1 RGCY 5 cut(s) 112, 253, 330, 377, 381
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 2 cut(s) 227, 249
DpnI GATC 2 cut(s) 274, 413
DpnII GATC 2 cut(s) 272, 411
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 318
FaiI YATR 4 cut(s) 213, 291, 388, 486
FaqI GGGAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 110, 113
Fsp4HI GCNGC 2 cut(s) 110, 113
GlaI GCGC 2 cut(s) 246, 423
GluI GCNGC 2 cut(s) 110, 113
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 1 cut(s) 330
HhaI GCGC 2 cut(s) 247, 424
Hin6I GCGC 2 cut(s) 245, 422
HinP1I GCGC 2 cut(s) 245, 422
HincII GTYRAC 1 cut(s) 224
HindII GTYRAC 1 cut(s) 224
HinfI GANTC 2 cut(s) 66, 477
HphI GGTGA 3 cut(s) 369, 454, 540
Hpy166II GTNNAC 2 cut(s) 27, 224
Hpy188I TCNGA 1 cut(s) 449
Hpy188III TCNNGA 2 cut(s) 63, 276
Hpy8I GTNNAC 2 cut(s) 27, 224
HpyAV CCTTC 2 cut(s) 293, 402
HpyCH4III ACNGT 2 cut(s) 154, 181
HpyCH4V TGCA 5 cut(s) 138, 157, 307, 340, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 378
HpyF3I CTNAG 2 cut(s) 227, 249
HspAI GCGC 2 cut(s) 245, 422
Kzo9I GATC 2 cut(s) 272, 411
LpnPI CCDG 3 cut(s) 247, 261, 363
Lsp1109I GCAGC 2 cut(s) 99, 121
MalI GATC 2 cut(s) 274, 413
MboI GATC 2 cut(s) 272, 411
MboII GAAGA 3 cut(s) 216, 486, 549
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 2 cut(s) 6, 266
MluCI AATT 6 cut(s) 120, 193, 217, 396, 429, 450
MnlI CCTC 7 cut(s) 200, 320, 326, 347, 500, 512, 518
MseI TTAA 3 cut(s) 174, 241, 468
MspA1I CMGCKG 1 cut(s) 112
MunI CAATTG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 154, 378
NdeII GATC 2 cut(s) 272, 411
NmeAIII GCCGAG 1 cut(s) 356
PfeI GAWTC 2 cut(s) 66, 477
PkrI GCNGC 2 cut(s) 111, 114
Ple19I CGATCG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 411
PvuI CGATCG 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 3 cut(s) 174, 241, 468
SatI GCNGC 2 cut(s) 110, 113
Sau3AI GATC 2 cut(s) 272, 411
ScaI AGTACT 1 cut(s) 87
SduI GDGCHC 2 cut(s) 6, 266
SetI ASST 6 cut(s) 114, 211, 255, 379, 511, 554
Sse9I AATT 6 cut(s) 120, 193, 217, 396, 429, 450
SspI AATATT 1 cut(s) 499
TaaI ACNGT 2 cut(s) 154, 181
TaqI TCGA 2 cut(s) 69, 271
TasI AATT 6 cut(s) 120, 193, 217, 396, 429, 450
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 2 cut(s) 66, 477
Tru1I TTAA 3 cut(s) 174, 241, 468
Tru9I TTAA 3 cut(s) 174, 241, 468
TscAI CASTG 1 cut(s) 184
TseI GCWGC 2 cut(s) 109, 112
TspDTI ATGAA 2 cut(s) 379, 444
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 1 cut(s) 184
XapI RAATTY 3 cut(s) 396, 429, 450
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.