Rw4G015970

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000637
Physical Location & Seq
Reverse (-)
36705970 .. 36707022
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015970.1

Sequence Viewer

Length: 870 bp
ATGGAAGATGAACGAAGATGGGAGGAATTAGAGGTTGACTGTTTGATAAATGTATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGGTACAGAGCAACCCTCAACCCTTCATGCTGGCAATATCTCAAATTTCCTGATCTTACTATTGATCTTGATTTTGACTTTGAAGACGGATATTGGTGTACCCTTATTCAAAGATTTGTAGATGAGTATCGACTTGATGAGAGCCGTTTCTCGGTGACTGCATTTGTTAAGTTCATAATCAGTCGTAGCAAAGGAAAGGCTCTTCATCTCACGCTATCCCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCCTTAAAGCTTCTTGAATTGCCCAGCGGTTTAGTGAATTCTGAGTCGAGCATTATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCGATAATTTGGAAAACTTCCTTGGACAGATCTCCATTCACTGCAAGAACTTGTGTCTTTTGCGTGTGGCTGATGCAGACATTGGTAAAGATGAAGCAATGGCAATTGCTAGCTTGCTGCCTAAGCTTAAGCAATTAATCTTGAAGAATGCAAATATTGATCGGGATGATCTTGTGACGCTACTGCGGGGCTGCAACGAGCTTGTGCGTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTGATTTCAGCTCTCAGGGTTCCACACTAGATGATTATGATGATTACGATGGATATGAATTGAATTCCCATGATGCAATTTTTTATGGATACGGTTCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

289

Amino Acids

32.78

Weight (kDa)

4.36

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 405, 673
AcsI RAATTY 4 cut(s) 155, 415, 460, 829
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 3 cut(s) 116, 211, 470
AfiI CCNNNNNNNGG 1 cut(s) 262
AflII CTTAAG 1 cut(s) 614
AgsI TTSAA 7 cut(s) 194, 221, 355, 395, 437, 631, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AluBI AGCT 6 cut(s) 388, 600, 613, 688, 751, 777
AluI AGCT 6 cut(s) 388, 600, 613, 688, 751, 777
ApeKI GCWGC 4 cut(s) 362, 486, 604, 678
ApoI RAATTY 4 cut(s) 155, 415, 460, 829
AseI ATTAAT 1 cut(s) 623
AsuHPI GGTGA 1 cut(s) 277
AsuNHI GCTAGC 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 4 cut(s) 349, 498, 591, 665
BccI CCATC 2 cut(s) 12, 809
BceAI ACGGC 1 cut(s) 240
BciVI GTATCC 1 cut(s) 848
BfaI CTAG 2 cut(s) 597, 794
BfmI CTRYAG 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 614
BfuI GTATCC 1 cut(s) 848
BglII AGATCT 1 cut(s) 516
BisI GCNGC 4 cut(s) 363, 487, 605, 679
BlsI GCNGC 4 cut(s) 364, 488, 606, 680
BmcAI AGTACT 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 787, 862
BmsI GCATC 2 cut(s) 550, 829
BmtI GCTAGC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu10I CCTNAGC 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 508
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse3DI GCAATG 2 cut(s) 77, 591
Bse8I GATNNNNATC 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 3 cut(s) 94, 658, 706
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 2 cut(s) 77, 591
BseMII CTCAG 2 cut(s) 411, 794
BseXI GCAGC 4 cut(s) 349, 498, 591, 665
BseYI CCCAGC 1 cut(s) 401
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 640
Bsp143I GATC 5 cut(s) 163, 175, 516, 646, 655
BspACI CCGC 2 cut(s) 405, 673
BspCNI CTCAG 2 cut(s) 412, 793
BspLI GGNNCC 2 cut(s) 787, 862
BspMAI CTGCAG 1 cut(s) 367
BspOI GCTAGC 1 cut(s) 600
BspQI GCTCTTC 1 cut(s) 318
BspTI CTTAAG 1 cut(s) 614
BsrDI GCAATG 2 cut(s) 77, 591
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 5 cut(s) 163, 175, 516, 646, 655
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 41, 860
Bst6I CTCTTC 2 cut(s) 55, 318
BstAFI CTTAAG 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 752
BstC8I GCNNGC 4 cut(s) 143, 598, 602, 753
BstDEI CTNAG 3 cut(s) 420, 609, 780
BstF5I GGATG 3 cut(s) 94, 658, 706
BstKTI GATC 5 cut(s) 166, 178, 519, 649, 658
BstMBI GATC 5 cut(s) 163, 175, 516, 646, 655
BstMWI GCNNNNNNNGC 2 cut(s) 610, 752
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 4 cut(s) 349, 498, 591, 665
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 516
BstYI RGATCY 1 cut(s) 516
BsuI GTATCC 1 cut(s) 848
BtsCI GGATG 3 cut(s) 94, 658, 706
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 4 cut(s) 143, 598, 602, 753
CseI GACGC 1 cut(s) 673
Csp6I GTAC 3 cut(s) 115, 210, 469
CviAII CATG 4 cut(s) 111, 138, 333, 836
CviQI GTAC 3 cut(s) 115, 210, 469
DdeI CTNAG 3 cut(s) 420, 609, 780
DpnI GATC 5 cut(s) 165, 177, 518, 648, 657
DpnII GATC 5 cut(s) 163, 175, 516, 646, 655
Eam1104I CTCTTC 2 cut(s) 55, 318
EarI CTCTTC 2 cut(s) 55, 318
Eco130I CCWWGG 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 324
EcoRI GAATTC 2 cut(s) 415, 829
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 4 cut(s) 114, 141, 336, 839
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 110, 137, 332, 835
FauI CCCGC 1 cut(s) 666
Fnu4HI GCNGC 4 cut(s) 363, 487, 605, 679
FokI GGATG 3 cut(s) 101, 665, 713
Fsp4HI GCNGC 4 cut(s) 363, 487, 605, 679
FspBI CTAG 2 cut(s) 597, 794
GluI GCNGC 4 cut(s) 363, 487, 605, 679
GsaI CCCAGC 1 cut(s) 405
HgaI GACGC 1 cut(s) 673
Hin1II CATG 4 cut(s) 114, 141, 336, 839
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 3 cut(s) 386, 611, 749
HinfI GANTC 2 cut(s) 74, 422
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 3 cut(s) 37, 210, 456
Hpy188I TCNGA 3 cut(s) 343, 421, 865
Hpy188III TCNNGA 7 cut(s) 161, 179, 352, 392, 437, 628, 650
Hpy8I GTNNAC 3 cut(s) 37, 210, 456
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 41, 860
HpyCH4V TGCA 8 cut(s) 105, 272, 365, 531, 563, 638, 681, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 610, 752
HpyF3I CTNAG 3 cut(s) 420, 609, 780
Hsp92II CATG 4 cut(s) 114, 141, 336, 839
Kzo9I GATC 5 cut(s) 163, 175, 516, 646, 655
LguI GCTCTTC 1 cut(s) 318
LpnPI CCDG 5 cut(s) 127, 174, 390, 415, 767
Lsp1109I GCAGC 4 cut(s) 349, 498, 591, 665
LweI GCATC 2 cut(s) 550, 829
MaeI CTAG 2 cut(s) 597, 794
MaeIII GTNAC 2 cut(s) 265, 661
MalI GATC 5 cut(s) 165, 177, 518, 648, 657
MboI GATC 5 cut(s) 163, 175, 516, 646, 655
MboII GAAGA 9 cut(s) 17, 27, 72, 206, 305, 356, 643, 743, 749
MfeI CAATTG 2 cut(s) 591, 709
MflI RGATCY 1 cut(s) 516
MlyI GAGTC 2 cut(s) 83, 431
MnlI CCTC 4 cut(s) 16, 25, 137, 721
MseI TTAA 4 cut(s) 279, 383, 615, 623
MspA1I CMGCKG 1 cut(s) 405
MspCI CTTAAG 1 cut(s) 614
MunI CAATTG 2 cut(s) 591, 709
Mva1269I GAATGC 1 cut(s) 640
MwoI GCNNNNNNNGC 2 cut(s) 610, 752
NdeII GATC 5 cut(s) 163, 175, 516, 646, 655
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 4 cut(s) 114, 141, 336, 839
NlaIV GGNNCC 2 cut(s) 787, 862
NmuCI GTSAC 2 cut(s) 265, 661
PciSI GCTCTTC 1 cut(s) 318
PctI GAATGC 1 cut(s) 640
PkrI GCNGC 4 cut(s) 364, 488, 606, 680
PleI GAGTC 2 cut(s) 82, 430
PpsI GAGTC 2 cut(s) 82, 430
PshBI ATTAAT 1 cut(s) 623
PspFI CCCAGC 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 787, 862
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 3 cut(s) 116, 211, 470
RsaNI GTAC 3 cut(s) 115, 210, 469
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 4 cut(s) 279, 383, 615, 623
SatI GCNGC 4 cut(s) 363, 487, 605, 679
Sau3AI GATC 5 cut(s) 163, 175, 516, 646, 655
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 2 cut(s) 83, 431
SetI ASST 8 cut(s) 36, 390, 602, 615, 690, 721, 753, 779
SfaNI GCATC 2 cut(s) 550, 829
SfcI CTRYAG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SsiI CCGC 2 cut(s) 405, 673
SspI AATATT 1 cut(s) 643
SspMI CTAG 2 cut(s) 597, 794
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 41, 860
TaqI TCGA 2 cut(s) 241, 425
TatI WGTACW 1 cut(s) 468
Tru1I TTAA 4 cut(s) 279, 383, 615, 623
Tru9I TTAA 4 cut(s) 279, 383, 615, 623
TscAI CASTG 1 cut(s) 533
TseFI GTSAC 2 cut(s) 265, 661
TseI GCWGC 4 cut(s) 362, 486, 604, 678
Tsp45I GTSAC 2 cut(s) 265, 661
TspDTI ATGAA 7 cut(s) 24, 126, 274, 305, 594, 750, 837
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 533
Vha464I CTTAAG 1 cut(s) 614
VspI ATTAAT 1 cut(s) 623
XapI RAATTY 4 cut(s) 155, 415, 460, 829
XspI CTAG 2 cut(s) 597, 794
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.