Rorug04G0131800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000637
Physical Location & Seq
Forward (+)
21097737 .. 21099706
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0131800.1

Sequence Viewer

Length: 489 bp
ATGCAAATACAGTTAAAACGAACCTCAACCAAGCCTTTATCTGGAAACAGTGAAGGACGAATTGTAGCCTTCCCTGACCATCCTCTGGGTTCCGGTCTCACATCTACTGCTGCGAAAGCAAGATATTCTGAACTAGGTCTTGTAGCAGGGATTCCTGTTGGGACTTTGCTAATTGATGCTCATGCCGGTGGTGTGGGGGTATTGGAAAGTGTGCCTTCATCAGATTCTCAGCCTAAAGGTTGCCCTATTATTCTTCCATGGGAGAGTGAGCCTGTGCTATTGGGTGCTGCCATTCTTGGTGCTGTAGCTGCAAGGAAATATTTTAGTATGCATGATGCCATGAAGGCCCTGAATGCTTCGGGGCAGGTCATCCATCCATCCAAAGACCCTAAGGTGAAGAAGTACCATGATGCCAAGTACCGCATTTTTTGTGACCTTTATGACCAGCAGCTATCTCATTGTTCGCTGATGGCTGAAGCCTTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

162

Amino Acids

17.19

Weight (kDa)

8.43

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 1 cut(s) 421
AfaI GTAC 2 cut(s) 404, 419
AfiI CCNNNNNNNGG 2 cut(s) 41, 85
AluBI AGCT 2 cut(s) 308, 451
AluI AGCT 2 cut(s) 308, 451
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 4 cut(s) 110, 287, 308, 448
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 406
AxyI CCTNAGG 1 cut(s) 390
BbvI GCAGC 4 cut(s) 97, 274, 295, 460
BccI CCATC 4 cut(s) 87, 381, 385, 463
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 4 cut(s) 111, 288, 309, 449
BlsI GCNGC 4 cut(s) 112, 289, 310, 450
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 3 cut(s) 166, 325, 400
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 85
Bse118I RCCGGY 1 cut(s) 185
Bse21I CCTNAGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 4 cut(s) 79, 369, 373, 377
BseLI CCNNNNNNNGG 2 cut(s) 41, 85
BseMII CTCAG 1 cut(s) 242
BseXI GCAGC 4 cut(s) 97, 274, 295, 460
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 2 cut(s) 93, 186
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 41, 85
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 101
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 1 cut(s) 421
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 12, 50
BstDEI CTNAG 2 cut(s) 228, 390
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 4 cut(s) 79, 369, 373, 377
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 4 cut(s) 116, 308, 344, 353
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 4 cut(s) 97, 274, 295, 460
Bsu36I CCTNAGG 1 cut(s) 390
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 257
BtsCI GGATG 4 cut(s) 79, 369, 373, 377
BtsIMutI CAGTG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 346
Csp6I GTAC 2 cut(s) 403, 418
CviAII CATG 5 cut(s) 182, 258, 332, 340, 407
CviJI RGCY 9 cut(s) 34, 68, 232, 271, 308, 347, 451, 473, 479
CviKI_1 RGCY 9 cut(s) 34, 68, 232, 271, 308, 347, 451, 473, 479
CviQI GTAC 2 cut(s) 403, 418
DdeI CTNAG 2 cut(s) 228, 390
Eco130I CCWWGG 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 101
Eco81I CCTNAGG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 5 cut(s) 185, 261, 335, 343, 410
FaiI YATR 8 cut(s) 183, 259, 329, 333, 341, 408, 441, 487
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FaqI GGGAC 1 cut(s) 175
FatI CATG 5 cut(s) 181, 257, 331, 339, 406
Fnu4HI GCNGC 4 cut(s) 111, 288, 309, 449
FokI GGATG 4 cut(s) 66, 356, 360, 364
Fsp4HI GCNGC 4 cut(s) 111, 288, 309, 449
FspBI CTAG 1 cut(s) 134
GluI GCNGC 4 cut(s) 111, 288, 309, 449
HaeIII GGCC 1 cut(s) 347
HapII CCGG 2 cut(s) 93, 186
Hin1II CATG 5 cut(s) 185, 261, 335, 343, 410
HinfI GANTC 2 cut(s) 151, 224
HpaII CCGG 2 cut(s) 93, 186
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 130, 223
Hpy188III TCNNGA 1 cut(s) 42
HpyAV CCTTC 4 cut(s) 47, 79, 225, 337
HpyCH4III ACNGT 2 cut(s) 12, 50
HpyCH4V TGCA 3 cut(s) 4, 311, 331
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 308, 344, 353
HpyF3I CTNAG 2 cut(s) 228, 390
Hsp92II CATG 5 cut(s) 185, 261, 335, 343, 410
Lsp1109I GCAGC 4 cut(s) 97, 274, 295, 460
LweI GCATC 3 cut(s) 166, 325, 400
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 431
MboII GAAGA 2 cut(s) 245, 409
MluCI AATT 2 cut(s) 60, 171
MnlI CCTC 2 cut(s) 34, 93
Mph1103I ATGCAT 1 cut(s) 333
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 2 cut(s) 93, 186
Mva1269I GAATGC 1 cut(s) 358
MwoI GCNNNNNNNGC 4 cut(s) 116, 308, 344, 353
NcoI CCATGG 1 cut(s) 257
NlaIII CATG 5 cut(s) 185, 261, 335, 343, 410
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 431
NsiI ATGCAT 1 cut(s) 333
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 151, 224
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 4 cut(s) 112, 289, 310, 450
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 346
RsaI GTAC 2 cut(s) 404, 419
RsaNI GTAC 2 cut(s) 403, 418
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 4 cut(s) 111, 288, 309, 449
Sau96I GGNCC 1 cut(s) 346
SetI ASST 8 cut(s) 26, 139, 241, 310, 369, 396, 438, 453
SfaNI GCATC 3 cut(s) 166, 325, 400
SfcI CTRYAG 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 2 cut(s) 60, 171
SsiI CCGC 1 cut(s) 421
SspI AATATT 1 cut(s) 320
SspMI CTAG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 12, 50
TasI AATT 2 cut(s) 60, 171
TfiI GAWTC 2 cut(s) 151, 224
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 4 cut(s) 110, 287, 308, 448
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 207, 356
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 85
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.