FvH4_4g13890

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000637
Physical Location & Seq
Reverse (-)
17392935 .. 17395916
2982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13890.t2

Sequence Viewer

Length: 825 bp
ATGGAGGACCAACGAATGTGGGAAGACTTAGACACGGACTGCTTGGTGAATATTTTTGGAAGAGTTGGAATGGAGTCACTGCTTTTGGATATCCTTTTTGTGTGCAAGTCATGGTACAAAGCAAGCCTCATTCCTTCTTGCTGGCATTGTATCGATTTTCCTGGCCTTTCAGTTGATCAAACTTTTGACTTGTGTCACCAAAGTGTTGGACATAATACCATTTATCAAAGATTTGCTTCTGAATTCCAAATTGATAAGAGCCGATTCTCCTTGACTGCTTTTATTAAGTTTGTCGTCAATCATAGCCGAGGAAAAGCTACTTCTATCTCACTACCTTCATATTGTACTCGAGAAGCAGTTGAGTTTGTTGCCCATGTATGTCCTGACCTTGTGTTTTTGGATGTATCTCGATATTTACTGTTCACAACATCAAGAAAACATATATCAGATCTGATGTGCAAGTGGGAAAATTTGGTGGAGTTATGGATAAGTTGGAGCTATAATTTAGAGCAAATCCTGTCACCAATCAGCATTCATTGCAAGAATTTTTGTTCTCTGCATGTGTGTAATGCCTCCATTCGTAAAGATGAAGCACTAGCGATCATTACTTTTGTGCCTAATATTAAGTACTTAATCTTGAGGTCTGCAGACTTTCATAGGGATAGTCTTGTTTCAATACTGAGGAGCTGTAAAAGTCTTGTGCTGTTGAATGTCAGAGATTCTGTTGGGTTTAATGAGGTTGATGAGGAAATATTAAAGCTTTCTTCGCATATTAGTAAATTTCTGTGCGAGGGTTCAAAAGAAGAAAGGTTTATTATACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

275

Amino Acids

31.61

Weight (kDa)

6.06

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 242, 469, 544, 779
AfaI GTAC 3 cut(s) 116, 346, 629
AgsI TTSAA 3 cut(s) 675, 709, 798
AjnI CCWGG 1 cut(s) 160
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 4 cut(s) 317, 498, 687, 760
AluI AGCT 4 cut(s) 317, 498, 687, 760
Ama87I CYCGRG 1 cut(s) 348
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 4 cut(s) 242, 469, 544, 779
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 3 cut(s) 58, 188, 513
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 175
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 645
BglII AGATCT 1 cut(s) 448
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 162
BoxI GACNNNNGTC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 658
Bsa29I ATCGAT 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 535
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 1 cut(s) 671
BseRI GAGGAG 1 cut(s) 697
BshFI GGCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 348
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 348
Bsp143I GATC 3 cut(s) 175, 448, 600
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 672
BspDI ATCGAT 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 3 cut(s) 175, 448, 600
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 420
Bst6I CTCTTC 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 537
BstC8I GCNNGC 2 cut(s) 124, 143
BstDEI CTNAG 2 cut(s) 28, 680
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 3 cut(s) 178, 451, 603
BstMBI GATC 3 cut(s) 175, 448, 600
BstMWI GCNNNNNNNGC 2 cut(s) 537, 766
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 563
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 645
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 1 cut(s) 165
BsuTUI ATCGAT 1 cut(s) 153
BtsCI GGATG 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 124, 143
Cfr13I GGNCC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 153
Csp6I GTAC 3 cut(s) 115, 345, 628
CspCI CAANNNNNGTGG 1 cut(s) 34
CviAII CATG 4 cut(s) 111, 374, 560, 822
CviJI RGCY 8 cut(s) 126, 165, 261, 306, 317, 498, 687, 760
CviKI_1 RGCY 8 cut(s) 126, 165, 261, 306, 317, 498, 687, 760
CviQI GTAC 3 cut(s) 115, 345, 628
DdeI CTNAG 2 cut(s) 28, 680
DpnI GATC 3 cut(s) 177, 450, 602
DpnII GATC 3 cut(s) 175, 448, 600
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 160
EcoRV GATATC 1 cut(s) 91
FaeI CATG 4 cut(s) 114, 377, 563, 825
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 4 cut(s) 110, 373, 559, 821
FbaI TGATCA 1 cut(s) 175
FokI GGATG 1 cut(s) 413
FspBI CTAG 1 cut(s) 596
HaeIII GGCC 1 cut(s) 165
Hin1II CATG 4 cut(s) 114, 377, 563, 825
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 3 cut(s) 74, 264, 719
HphI GGTGA 3 cut(s) 58, 188, 513
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 4 cut(s) 241, 448, 453, 716
Hpy188III TCNNGA 5 cut(s) 350, 383, 408, 432, 637
Hpy8I GTNNAC 1 cut(s) 423
HpyAV CCTTC 2 cut(s) 144, 345
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4V TGCA 5 cut(s) 105, 459, 540, 559, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 537, 766
HpyF3I CTNAG 2 cut(s) 28, 680
Hsp92II CATG 4 cut(s) 114, 377, 563, 825
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 3 cut(s) 175, 448, 600
LmnI GCTCC 2 cut(s) 495, 684
LpnPI CCDG 5 cut(s) 127, 147, 174, 396, 530
MaeI CTAG 1 cut(s) 596
MaeIII GTNAC 3 cut(s) 75, 194, 519
MalI GATC 3 cut(s) 177, 450, 602
MboI GATC 3 cut(s) 175, 448, 600
MboII GAAGA 4 cut(s) 35, 72, 756, 815
MflI RGATCY 1 cut(s) 448
MluCI AATT 6 cut(s) 242, 249, 469, 502, 544, 779
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 3 cut(s) 46, 187, 473
MnlI CCTC 8 cut(s) 137, 302, 583, 633, 675, 730, 739, 784
MseI TTAA 5 cut(s) 285, 624, 632, 732, 755
MslI CAYNNNNRTG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 537, 766
NdeII GATC 3 cut(s) 175, 448, 600
NlaIII CATG 4 cut(s) 114, 377, 563, 825
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 3 cut(s) 75, 194, 519
NspI RCATGY 1 cut(s) 563
OliI CACNNNNGTG 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 348
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 2 cut(s) 264, 719
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PshAI GACNNNNGTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 649
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 3 cut(s) 116, 346, 629
RsaNI GTAC 3 cut(s) 115, 345, 628
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 5 cut(s) 285, 624, 632, 732, 755
Sau3AI GATC 3 cut(s) 175, 448, 600
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 162
SetI ASST 9 cut(s) 319, 337, 390, 500, 644, 689, 741, 762, 812
SfcI CTRYAG 1 cut(s) 645
Sfr274I CTCGAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 348, 637
SmoI CTYRAG 2 cut(s) 348, 637
Sse9I AATT 6 cut(s) 242, 249, 469, 502, 544, 779
SspI AATATT 3 cut(s) 52, 622, 753
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 420
TaqI TCGA 3 cut(s) 153, 349, 409
TasI AATT 6 cut(s) 242, 249, 469, 502, 544, 779
TatI WGTACW 2 cut(s) 344, 627
TfiI GAWTC 2 cut(s) 264, 719
Tru1I TTAA 5 cut(s) 285, 624, 632, 732, 755
Tru9I TTAA 5 cut(s) 285, 624, 632, 732, 755
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 3 cut(s) 75, 194, 519
Tsp45I GTSAC 3 cut(s) 75, 194, 519
TspDTI ATGAA 4 cut(s) 327, 524, 603, 644
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 4 cut(s) 242, 469, 544, 779
XceI RCATGY 1 cut(s) 563
XhoI CTCGAG 1 cut(s) 348
XspI CTAG 1 cut(s) 596
ZrmI AGTACT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.