Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

16050881 .. 16052584

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGATGTCTGTACAGTCTTTCCATGAAGAAGAAAAATTCCTGGATCTTGTTTGGACTCTGTCAAAATTGAAGCACCCAAACATCGTACCACTTCTTGGCTATTGTGTGGAGCATGGACAACACCTTCTTGTGTATGAATATGTCAGAAATTTATCCCTTGATGAAGCACTTCACAGCGGTAACACTGTTAGTCTGCCCTGGGGGCTTCGCCTCCAGATTGCTCTTGGTGTTGCTGAAGCTTTAGCCTATTTACATACGTTGTCGTCTCCTGTTGCTCATGGCAACTTGAAGAGTGCCAATATCTTACTCGATGAAAACCTTGCTCCTCATATTTGTGACTGCGGGCTTGCTATTTTGGGGCCACTTACGAGCGATAGTCTTGAACTAAAGGCTTCAGAAGATGCTATTGGTGACACTGGCTACATTGCACCTGAGCATGGCCTACTAGGATTTGATAACACAAAGAGTGACATCTATGCCTTCGGAGTGCTGCTTTTGGAGCTCTTGACAGGAAGGAAAGCTTTTGATAGTTCAAAACCAAGGGAAGAGCAATCAATGATGAAATTTTCTTCATTGCGGCTTCATGACTATGAGAGTCTGGAAGAGATGATCGATCCAAGAATGAGAATGTCTTGTTCCCTGAGGGCTCTCTCAAATTTTGCTGATATTATCTCCCTCTGTATACAGCCAAGTATAGACTTGCAGATGTCTGAAGTCGTGAAGTCTCTCAGACTGGTTGATGGCACTCCCATACTCCATGTGTATAAGCGGAAAAAGAAATCTTCAGTCGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

267

Amino Acids

29.57

Weight (kDa)

5.75

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	9 - 209	2.8e-29	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	12 - 200	2.9e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	685
AciI	CCGC	4 cut(s)	180, 345, 580, 772
AclWI	GGATC	2 cut(s)	54, 611
AcsI	RAATTY	4 cut(s)	38, 151, 566, 658
AcuI	CTGAAG	4 cut(s)	258, 381, 735, 771
AfaI	GTAC	2 cut(s)	15, 90
AfiI	CCNNNNNNNGG	2 cut(s)	98, 440
AgsI	TTSAA	4 cut(s)	73, 292, 386, 537
AjnI	CCWGG	2 cut(s)	42, 200
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AluBI	AGCT	3 cut(s)	242, 505, 524
AluI	AGCT	3 cut(s)	242, 505, 524
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	273, 732
AlwI	GGATC	2 cut(s)	54, 611
AoxI	GGCC	2 cut(s)	362, 442
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	4 cut(s)	38, 151, 566, 658
Asp700I	GAANNNNTTC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	425
AxyI	CCTNAGG	1 cut(s)	644
BanII	GRGCYC	2 cut(s)	507, 652
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	1 cut(s)	737
BciT130I	CCWGG	2 cut(s)	44, 202
BcoDI	GTCTC	2 cut(s)	273, 732
BfaI	CTAG	1 cut(s)	449
BglI	GCCNNNNNGGC	1 cut(s)	205
BisI	GCNGC	2 cut(s)	494, 581
BlsI	GCNGC	2 cut(s)	495, 582
Bme1390I	CCNGG	2 cut(s)	44, 202
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	44, 202
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	615
BsaJI	CCNNGG	3 cut(s)	200, 201, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 440
Bse1I	ACTGG	2 cut(s)	424, 741
Bse21I	CCTNAGG	1 cut(s)	644
Bse3DI	GCAATG	2 cut(s)	426, 575
BseBI	CCWGG	2 cut(s)	44, 202
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	3 cut(s)	200, 201, 542
BseLI	CCNNNNNNNGG	2 cut(s)	98, 440
BseMI	GCAATG	2 cut(s)	426, 575
BseMII	CTCAG	3 cut(s)	426, 635, 745
BseNI	ACTGG	2 cut(s)	424, 741
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	480
BshFI	GGCC	2 cut(s)	364, 444
BshVI	ATCGAT	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	98, 440
BsmAI	GTCTC	2 cut(s)	273, 732
BsmBI	CGTCTC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	364, 444
Bsp1286I	GDGCHC	2 cut(s)	507, 652
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	46, 612, 616
BspACI	CCGC	4 cut(s)	180, 345, 580, 772
BspANI	GGCC	2 cut(s)	364, 444
BspCNI	CTCAG	3 cut(s)	427, 636, 744
BspDI	ATCGAT	1 cut(s)	615
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	2 cut(s)	54, 611
BspQI	GCTCTTC	1 cut(s)	543
BsrDI	GCAATG	2 cut(s)	426, 575
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	424, 741
BssECI	CCNNGG	3 cut(s)	200, 201, 542
BssMI	GATC	3 cut(s)	46, 612, 616
BssNAI	GTATAC	1 cut(s)	686
BssT1I	CCWWGG	1 cut(s)	542
Bst1107I	GTATAC	1 cut(s)	686
Bst2UI	CCWGG	2 cut(s)	44, 202
Bst4CI	ACNGT	2 cut(s)	18, 190
Bst6I	CTCTTC	3 cut(s)	287, 543, 600
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	347, 351
BstDEI	CTNAG	3 cut(s)	435, 644, 731
BstKTI	GATC	3 cut(s)	49, 615, 619
BstMAI	GTCTC	2 cut(s)	273, 732
BstMBI	GATC	3 cut(s)	46, 612, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 502
BstNI	CCWGG	2 cut(s)	44, 202
BstSCI	CCNGG	2 cut(s)	42, 200
BstV1I	GCAGC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZ17I	GTATAC	1 cut(s)	686
Bsu15I	ATCGAT	1 cut(s)	615
Bsu36I	CCTNAGG	1 cut(s)	644
BsuRI	GGCC	2 cut(s)	364, 444
BsuTUI	ATCGAT	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	186, 417
Cac8I	GCNNGC	2 cut(s)	347, 351
CciI	TCATGA	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	14, 89
CviAII	CATG	6 cut(s)	26, 116, 281, 440, 587, 761
CviQI	GTAC	2 cut(s)	14, 89
DdeI	CTNAG	3 cut(s)	435, 644, 731
DpnI	GATC	3 cut(s)	48, 614, 618
DpnII	GATC	3 cut(s)	46, 612, 616
Eam1104I	CTCTTC	3 cut(s)	287, 543, 600
EarI	CTCTTC	3 cut(s)	287, 543, 600
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	1 cut(s)	542
Eco24I	GRGCYC	2 cut(s)	507, 652
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	4 cut(s)	258, 381, 735, 771
Eco81I	CCTNAGG	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	42, 200
EcoT14I	CCWWGG	1 cut(s)	542
EcoT38I	GRGCYC	2 cut(s)	507, 652
ErhI	CCWWGG	1 cut(s)	542
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	6 cut(s)	29, 119, 284, 443, 590, 764
FalI	AAGNNNNNCTT	2 cut(s)	508, 540
FatI	CATG	6 cut(s)	25, 115, 280, 439, 586, 760
FauI	CCCGC	1 cut(s)	338
FblI	GTMKAC	1 cut(s)	685
Fnu4HI	GCNGC	2 cut(s)	494, 581
FriOI	GRGCYC	2 cut(s)	507, 652
Fsp4HI	GCNGC	2 cut(s)	494, 581
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	2 cut(s)	494, 581
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	364, 444
Hin1II	CATG	6 cut(s)	29, 119, 284, 443, 590, 764
HindIII	AAGCTT	2 cut(s)	240, 522
HinfI	GANTC	2 cut(s)	58, 598
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	686
Hpy188I	TCNGA	5 cut(s)	149, 400, 488, 715, 734
Hpy188III	TCNNGA	6 cut(s)	217, 383, 508, 587, 602, 721
Hpy8I	GTNNAC	1 cut(s)	686
HpyAV	CCTTC	3 cut(s)	137, 493, 510
HpyCH4III	ACNGT	2 cut(s)	18, 190
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	431, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 502
HpyF3I	CTNAG	3 cut(s)	435, 644, 731
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	6 cut(s)	29, 119, 284, 443, 590, 764
Kzo9I	GATC	3 cut(s)	46, 612, 616
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	3 cut(s)	112, 331, 502
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	4 cut(s)	182, 338, 413, 470
MalI	GATC	3 cut(s)	48, 614, 618
MboI	GATC	3 cut(s)	46, 612, 616
MboII	GAAGA	9 cut(s)	16, 41, 44, 304, 413, 560, 564, 617, 777
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	507, 652
MluCI	AATT	5 cut(s)	38, 68, 151, 566, 658
MlyI	GAGTC	2 cut(s)	52, 607
MnlI	CCTC	4 cut(s)	224, 339, 639, 689
MroXI	GAANNNNTTC	1 cut(s)	171
MslI	CAYNNNNRTG	2 cut(s)	336, 591
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	44, 202
MvaI	CCWGG	2 cut(s)	44, 202
MwoI	GCNNNNNNNGC	2 cut(s)	205, 502
NdeII	GATC	3 cut(s)	46, 612, 616
NlaIII	CATG	6 cut(s)	29, 119, 284, 443, 590, 764
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	3 cut(s)	338, 413, 470
PagI	TCATGA	1 cut(s)	586
PasI	CCCWGGG	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	98
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	495, 582
PleI	GAGTC	2 cut(s)	52, 606
PpsI	GAGTC	2 cut(s)	52, 606
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	42, 200
PspGI	CCWGG	2 cut(s)	42, 200
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	61
RsaI	GTAC	2 cut(s)	15, 90
RsaNI	GTAC	2 cut(s)	14, 89
RseI	CAYNNNNRTG	2 cut(s)	336, 591
SacI	GAGCTC	1 cut(s)	507
SapI	GCTCTTC	1 cut(s)	543
SatI	GCNGC	2 cut(s)	494, 581
Sau3AI	GATC	3 cut(s)	46, 612, 616
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	52, 607
ScrFI	CCNGG	2 cut(s)	44, 202
SduI	GDGCHC	2 cut(s)	507, 652
SetI	ASST	7 cut(s)	129, 244, 263, 324, 436, 507, 526
SfaNI	GCATC	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	336, 591
Sse9I	AATT	5 cut(s)	38, 68, 151, 566, 658
SsiI	CCGC	4 cut(s)	180, 345, 580, 772
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	42, 200
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	18, 190
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	312, 615
TasI	AATT	5 cut(s)	38, 68, 151, 566, 658
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	1 cut(s)	583
TscAI	CASTG	2 cut(s)	193, 424
TseFI	GTSAC	3 cut(s)	338, 413, 470
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	3 cut(s)	338, 413, 470
TspDTI	ATGAA	8 cut(s)	17, 42, 153, 180, 330, 564, 575, 578
TspRI	CASTG	2 cut(s)	193, 424
Tth111I	GACNNNGTC	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	98
XapI	RAATTY	4 cut(s)	38, 151, 566, 658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	685
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.