Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

27033215 .. 27035945

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGAAGCTGTATCGGCGCGTGTACTTACTACAGATTTTCGTCGCGGCTGTTCTGGTGGCGTCCTCAGCCGAGATTTTTACTGATCCGCTTGACCTCGTAGCTCTTCAAGATCTTTACAAGACTCTCAACCAACCGCCACAGCTGACGGGTTGGAGATTGGATGGTGGGGATCCTTGCTTAGAATGGCTTGGTGTCTCCTGCATTTACAACGGAGTTGTATACCTGTACCTTGAAGTGATATTAGTTCCAATACCATTGGTGGTGAAATTCCATGTCTTACCCCCCAATGCGACTCATATAAATATGGCAGACAACTATTTGAGCCACAATATTCCCCCATGCTTACATGGCATGAAAAGTCTCCGACATTTGAATCTGAGCCACAATTTGTTATCTGGACCCATTGGCAATGTTTTTACCGGCCTACAGAATTTGAGAGAAATGGATTTGTCATATAATAACTTTACTGGAGATCTTCCAAGTTCATTTGAATCCCTCACAAATCTCACTGGACTGTACTTCCAGAATAACCAATTCACTGGATCAGTTGCTTACCTAGCTGAACTTCCACTAATTGATCTGAATATCGAATGCAATTATTTCAGTGGTATCATTCCCAGACAGTTTCAGTCCATACCAAATTTATGGATCGGGGGAAATAGTCTTCATCTTCCAGGGCACAACTATCCACCCCACTCTGGAAAAGCAGGCAAGTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

26.9

Weight (kDa)

6.02

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 68	1.1e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	139 - 180	3.7e-07	Leucine rich repeat
LRR_4	PF12799	144 - 180	7.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	2 cut(s)	21, 47
AciI	CCGC	3 cut(s)	47, 89, 137
AclWI	GGATC	5 cut(s)	80, 167, 180, 553, 659
AcsI	RAATTY	3 cut(s)	269, 433, 643
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	3 cut(s)	26, 230, 521
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	110, 236, 376, 494
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	4 cut(s)	10, 104, 145, 563
AluI	AGCT	4 cut(s)	10, 104, 145, 563
Alw26I	GTCTC	2 cut(s)	202, 368
AlwI	GGATC	5 cut(s)	80, 167, 180, 553, 659
AoxI	GGCC	1 cut(s)	424
ApoI	RAATTY	3 cut(s)	269, 433, 643
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	684
BamHI	GGATCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	659
BbvCI	CCTCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	202, 368
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	2 cut(s)	32, 428
BglII	AGATCT	2 cut(s)	112, 475
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	678
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	174, 403
BmrFI	CCNGG	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	677
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	3 cut(s)	475, 517, 547
Bse3DI	GCAATG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	1 cut(s)	677
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	81, 371
BseNI	ACTGG	3 cut(s)	475, 517, 547
BseSI	GKGCMC	1 cut(s)	684
Bsh1236I	CGCG	2 cut(s)	21, 47
BshFI	GGCC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	2 cut(s)	202, 368
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	7 cut(s)	85, 112, 172, 475, 545, 580, 651
BspACI	CCGC	3 cut(s)	47, 89, 137
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	80, 372
BspFNI	CGCG	2 cut(s)	21, 47
BspLI	GGNNCC	2 cut(s)	174, 403
BspPI	GGATC	5 cut(s)	80, 167, 180, 553, 659
BspQI	GCTCTTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	3 cut(s)	475, 517, 547
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	7 cut(s)	85, 112, 172, 475, 545, 580, 651
BssNAI	GTATAC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	62
Bst1107I	GTATAC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	2 cut(s)	519, 627
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	3 cut(s)	67, 181, 380
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	2 cut(s)	21, 47
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	7 cut(s)	88, 115, 175, 478, 548, 583, 654
BstMAI	GTCTC	2 cut(s)	202, 368
BstMBI	GATC	7 cut(s)	85, 112, 172, 475, 545, 580, 651
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 68, 351, 560
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	2 cut(s)	32, 428
BstSLI	GKGCMC	1 cut(s)	684
BstUI	CGCG	2 cut(s)	21, 47
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	3 cut(s)	112, 172, 475
BstXI	CCANNNNNNTGG	2 cut(s)	542, 648
BstYI	RGATCY	3 cut(s)	112, 172, 475
BstZ17I	GTATAC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	510, 540, 613
Cac8I	GCNNGC	1 cut(s)	712
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	3 cut(s)	25, 229, 520
CviAII	CATG	4 cut(s)	275, 342, 350, 355
CviQI	GTAC	3 cut(s)	25, 229, 520
DdeI	CTNAG	3 cut(s)	67, 181, 380
DpnI	GATC	7 cut(s)	87, 114, 174, 477, 547, 582, 653
DpnII	GATC	7 cut(s)	85, 112, 172, 475, 545, 580, 651
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	676
FaeI	CATG	4 cut(s)	278, 345, 353, 358
FatI	CATG	4 cut(s)	274, 341, 349, 354
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	278, 345, 353, 358
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	4 cut(s)	124, 295, 376, 494
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	25, 223
Hpy188I	TCNGA	3 cut(s)	368, 381, 585
Hpy188III	TCNNGA	4 cut(s)	110, 399, 526, 702
Hpy8I	GTNNAC	2 cut(s)	25, 223
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	519, 627
HpyCH4V	TGCA	2 cut(s)	204, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 68, 351, 560
HpyF3I	CTNAG	3 cut(s)	67, 181, 380
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	4 cut(s)	278, 345, 353, 358
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	7 cut(s)	85, 112, 172, 475, 545, 580, 651
LguI	GCTCTTC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	560
MalI	GATC	7 cut(s)	87, 114, 174, 477, 547, 582, 653
MboI	GATC	7 cut(s)	85, 112, 172, 475, 545, 580, 651
MboII	GAAGA	4 cut(s)	98, 470, 659, 665
MflI	RGATCY	3 cut(s)	112, 172, 475
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	7 cut(s)	269, 388, 433, 536, 576, 598, 643
MlyI	GAGTC	2 cut(s)	118, 289
MmeI	TCCRAC	2 cut(s)	134, 391
MnlI	CCTC	3 cut(s)	76, 107, 509
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	678
MvnI	CGCG	2 cut(s)	21, 47
MwoI	GCNNNNNNNGC	4 cut(s)	16, 68, 351, 560
NdeII	GATC	7 cut(s)	85, 112, 172, 475, 545, 580, 651
NlaIII	CATG	4 cut(s)	278, 345, 353, 358
NlaIV	GGNNCC	2 cut(s)	174, 403
NmeAIII	GCCGAG	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	111
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	376, 494
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	118, 289
PpsI	GAGTC	2 cut(s)	118, 289
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	174, 403
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	3 cut(s)	112, 172, 475
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	3 cut(s)	26, 230, 521
RsaNI	GTAC	3 cut(s)	25, 229, 520
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	7 cut(s)	85, 112, 172, 475, 545, 580, 651
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	2 cut(s)	118, 289
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	1 cut(s)	684
SetI	ASST	8 cut(s)	12, 99, 106, 147, 228, 234, 561, 565
SfcI	CTRYAG	2 cut(s)	32, 428
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	7 cut(s)	269, 388, 433, 536, 576, 598, 643
SsiI	CCGC	3 cut(s)	47, 89, 137
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	519, 627
TaqI	TCGA	1 cut(s)	591
TasI	AATT	7 cut(s)	269, 388, 433, 536, 576, 598, 643
TatI	WGTACW	2 cut(s)	24, 519
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	376, 494
TscAI	CASTG	3 cut(s)	517, 547, 613
TspDTI	ATGAA	3 cut(s)	371, 477, 659
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	517, 547, 613
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	3 cut(s)	269, 433, 643
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.