Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

47832736 .. 47840086

Gene Structure 7351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2217 bp

ATGGAGCGGTTTCGATTTTCGATCTTTGCTTATAGTAGTTACTACTTCATCTCTAATTCTCCGGAACCAAAAGCGAGGTTTCGTTTTTGGCTTGATTCTCTGTTTCTCGATGATTTCTCTTCGTTCTCGACGAGATTTAGCCCCGATTTTCAAGAAATGGCGAAGCTGTCTTGGTTTGTCTACTTCACGGCGGTTTTCCTCGCGGCGGTTCGGTGTCGTCCCCGGGGGCTTTTACTTGATCCACTTGACGTCATAACACTTCAAGACCTGTACAAAACTCTCAACGAACCGCCACAGCTGACTGGTTGGGGATTGGAAGGGGACCCTTGCAGTATCTTTGAGGCCTGGGACGGTGTGCTATGCGTTGGGGCTAAAGTCCAAAAGCTGTTACTTGATGATCGTAATTTGACCGGCTACATCAGCCCAGAGATCAGGCACCTCTATAGGTTGCAGAAACTTGATTTTAGCTCCAATACCATTGCTGGTGAAATTCCGCATGTCTTACCCCCCAATTTGACTCATATGAATCTAAGCCACAATTTGTTATCTGGACCCATTGGCAATGTTTTTCCAGGCCTGCAGAATTTAAGAGAAATGGATTTGTCATATAATAACTTTACCGGAGGTCTGCCAAGTTCATTTCGATCCCTCACAAATCTCACTGGACTGTACTTACAGAACAACCAGCTTACTGGATCAGTTGCTCACCTTGCTGAACTTCCACTAATTGATCTGAATATTGAAAATAATAGGTTCACTGGTATCATCCCGAGTCATTTTCAGTCCATACCAAATTTATGGATTGGGGGAAATAGTTTTCATCTTCAAGGGGACAATACAAGATTAAATAACTCCGGGATCCAACCCCCTCCGGCAACTCAATCAAGTGCCATCGAGGAGAGAAGCCCTTCTACCAAGTTAGGTGGACACAAGAAGAGGAGGCTTGGCCCTGGCGGAATTGCCCTTATAATTGGTGGAGGAACTCTACTTGCATCAGCTATGGCACTTTACATTGCAGTTCGTATCAAACAATCACGTGCACAGAAACTTACAACTTTGTGGGGAGGTTCAATCCGTTCTTTCTCAGTCATAAATACGGCCAAAGATAGTCCTATGAATGCACAAGAAGAAAGGCAAGCAATACTGACTTTCAGGGAACCCATTCGACCTCCAGTTTATCATAGCACAGTTGAGAAAACTGGAAGAAAAAGTTTCTCTGATAAGTGCAGTTCCCTTCAAAGAATCAAACGATATACTGTGGAAGAGCTTCAGTCAGCTACAAACAGCTTTGCGGAAGAAAAGTTGCTGGGCCAAGGATCTCTTGCCTCTGTTTACAAAGCTGAGTTTCCTGATGGCCAAATTTTGGCTGTAAAGAACATCAAGACGTCCGGACTCTCTTTCCATGAAGAAGAACAATTCCTGGATGTCATTTCCACTCTTTCCCAGTTGAAGCACCCAAAGATTGTACCACTTGTTGGCTATTGTGTAAAGCATGGACAACTACTTCTCGTGTACGAATATGTTGGAAATTTATCCCTTGATGAGGCACTTCACAGTGAAGCGTTCAAGACTCTGTCCTGGGACCTCCGTCTCCAAATTGCTCTGGCTGTTGCTCAAGCTTTAAACTATCTGCACTCCACATTGTCTCCGCCAGTAGCTCATGGCAACTTGAAGAGCGAAAATATCTTACTTGATGAAGAACTTGCTCCTCATGTCTGTGACTGCGGACTTGCTATTTTGAGGCCACTTACAAGCAGTAGTCTTCAAATGAAGGCTTCAGAAAATGCTGTTGGTGACATTGGCTACATTGCACTTGAGCATGTCCTACCAGGGTTTGATAAGACAAAGACTGACATCCATGATTTCGGAGTGGTGCTGTGGGAGCTCTACACAGGAAAGAAACCCTCCTATAGACCAAGGGAAGAGCAATCACTGGTGAAATGGGCTTCATTGGGGCTTGATGATACAGAGAATCTGCTTGAGATGATCGATCCAGTCATTAAAAAGACATGTTCCTCCAAGGCTCTCGCAGATTTTGCTGATATTATCTCCCGCTGTACACAGGTTCACGGCAAGTTTCATCGTTTGCTTATGCCTCTTGGATTTGAAACAAAGATTTTCTCCAATTCGGTCTCTCGAGAAAAGGAGCAGCAAAAGAAGGCCACCGGTACACCATCGCTTAAGATAGAGAATTTTGAGGAGATGGAGGAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

738

Amino Acids

82.34

Weight (kDa)

6.59

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	170 - 230	1.4e-09	Leucine rich repeat
Pkinase	PF00069	431 - 644	3.8e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	433 - 646	3.2e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	968
AatII	GACGTC	2 cut(s)	252, 1388
AccB1I	GGYRCC	1 cut(s)	435
AccB7I	CCANNNNNTGG	2 cut(s)	1363, 1475
AccBSI	CCGCTC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	203
AccIII	TCCGGA	2 cut(s)	61, 1388
AclWI	GGATC	7 cut(s)	233, 639, 703, 853, 866, 1324, 1985
AcoI	YGGCCR	2 cut(s)	1098, 1354
AcsI	RAATTY	6 cut(s)	489, 583, 793, 1359, 1528, 2191
AcuI	CTGAAG	2 cut(s)	1253, 1761
AcvI	CACGTG	1 cut(s)	1037
AcyI	GRCGYC	2 cut(s)	249, 1385
AfaI	GTAC	6 cut(s)	272, 671, 1467, 1514, 2059, 2170
AfiI	CCNNNNNNNGG	4 cut(s)	205, 1363, 1475, 1543
AflII	CTTAAG	1 cut(s)	2180
AflIII	ACRYGT	1 cut(s)	2009
AgeI	ACCGGT	1 cut(s)	2165
AjnI	CCWGG	6 cut(s)	344, 571, 949, 1419, 1577, 1828
AjuI	GAANNNNNNNTTGG	2 cut(s)	1773, 1805
Alw21I	GWGCWC	2 cut(s)	1042, 1887
Alw26I	GTCTC	3 cut(s)	1595, 1650, 2137
Alw44I	GTGCAC	1 cut(s)	1038
AlwI	GGATC	7 cut(s)	233, 639, 703, 853, 866, 1324, 1985
Ama87I	CYCGRG	3 cut(s)	222, 769, 2136
Aor13HI	TCCGGA	2 cut(s)	61, 1388
AoxI	GGCC	8 cut(s)	342, 574, 946, 1098, 1309, 1354, 1742, 2160
ApaLI	GTGCAC	1 cut(s)	1038
ApeKI	GCWGC	1 cut(s)	2149
ApoI	RAATTY	6 cut(s)	489, 583, 793, 1359, 1528, 2191
AsiGI	ACCGGT	1 cut(s)	2165
Asp700I	GAANNNNTTC	3 cut(s)	907, 1161, 1266
AspS9I	GGNCC	5 cut(s)	322, 551, 947, 1309, 1582
AsuC2I	CCSGG	3 cut(s)	223, 224, 856
AsuHPI	GGTGA	4 cut(s)	497, 698, 1805, 1948
AvaI	CYCGRG	3 cut(s)	222, 769, 2136
AvaII	GGWCC	3 cut(s)	322, 551, 1582
BaeGI	GKGCMC	1 cut(s)	1042
BalI	TGGCCA	1 cut(s)	1356
BamHI	GGATCC	1 cut(s)	858
BanI	GGYRCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	1887
BarI	GAAGNNNNNNTAC	2 cut(s)	895, 927
BauI	CACGAG	1 cut(s)	1508
BbrPI	CACGTG	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	1754
Bbv12I	GWGCWC	2 cut(s)	1042, 1887
BbvI	GCAGC	1 cut(s)	2161
BccI	CCATC	4 cut(s)	899, 1346, 2182, 2197
BceAI	ACGGC	3 cut(s)	204, 1113, 2086
BciT130I	CCWGG	6 cut(s)	346, 573, 951, 1421, 1579, 1830
BcnI	CCSGG	3 cut(s)	223, 224, 856
BcoDI	GTCTC	3 cut(s)	1595, 1650, 2137
BfmI	CTRYAG	3 cut(s)	442, 578, 1909
BfrI	CTTAAG	1 cut(s)	2180
BisI	GCNGC	2 cut(s)	204, 2150
BlsI	GCNGC	2 cut(s)	205, 2151
Bme1390I	CCNGG	9 cut(s)	223, 224, 346, 573, 856, 951, 1421, 1579, 1830
Bme18I	GGWCC	3 cut(s)	322, 551, 1582
BmeT110I	CYCGRG	3 cut(s)	222, 769, 2136
BmgT120I	GGNCC	5 cut(s)	322, 551, 947, 1309, 1582
BmiI	GGNNCC	8 cut(s)	66, 323, 324, 437, 553, 860, 1158, 1583
BmrFI	CCNGG	9 cut(s)	223, 224, 346, 573, 856, 951, 1421, 1579, 1830
BmrI	ACTGGG	1 cut(s)	1438
BmsI	GCATC	1 cut(s)	1001
BmuI	ACTGGG	1 cut(s)	1438
BoxI	GACNNNNGTC	1 cut(s)	1587
BpiI	GAAGAC	1 cut(s)	1754
BpmI	CTGGAG	1 cut(s)	1155
BpuEI	CTTGAG	3 cut(s)	1599, 1835, 2000
BpuMI	CCSGG	3 cut(s)	223, 224, 856
Bsa29I	ATCGAT	1 cut(s)	1989
BsaAI	YACGTR	1 cut(s)	1037
BsaHI	GRCGYC	2 cut(s)	249, 1385
BsaI	GGTCTC	1 cut(s)	2137
BsaWI	WCCGGW	4 cut(s)	61, 620, 1388, 2165
BsaXI	ACNNNNNCTCC	3 cut(s)	1630, 1660, 2198
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 1363, 1475, 1543
Bse118I	RCCGGY	2 cut(s)	410, 2165
Bse3DI	GCAATG	4 cut(s)	477, 568, 1011, 1806
BseAI	TCCGGA	2 cut(s)	61, 1388
BseBI	CCWGG	6 cut(s)	346, 573, 951, 1421, 1579, 1830
BseCI	ATCGAT	1 cut(s)	1989
BseGI	GGATG	3 cut(s)	765, 1429, 1854
BseLI	CCNNNNNNNGG	4 cut(s)	205, 1363, 1475, 1543
BseMI	GCAATG	4 cut(s)	477, 568, 1011, 1806
BseMII	CTCAG	2 cut(s)	1098, 1332
BseRI	GAGGAG	4 cut(s)	911, 952, 1698, 2213
BseSI	GKGCMC	1 cut(s)	1042
BseXI	GCAGC	1 cut(s)	2161
BseYI	CCCAGC	1 cut(s)	1306
BsgI	GTGCAG	2 cut(s)	1246, 1616
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	8 cut(s)	344, 576, 948, 1100, 1311, 1356, 1744, 2162
BshNI	GGYRCC	1 cut(s)	435
BshTI	ACCGGT	1 cut(s)	2165
BshVI	ATCGAT	1 cut(s)	1989
BsiHKAI	GWGCWC	2 cut(s)	1042, 1887
BsiHKCI	CYCGRG	3 cut(s)	222, 769, 2136
BsiSI	CCGG	8 cut(s)	62, 223, 411, 621, 855, 872, 1389, 2166
BslFI	GGGAC	5 cut(s)	204, 335, 362, 845, 1595
BslI	CCNNNNNNNGG	4 cut(s)	205, 1363, 1475, 1543
BsmAI	GTCTC	3 cut(s)	1595, 1650, 2137
BsmBI	CGTCTC	1 cut(s)	1595
BsmFI	GGGAC	5 cut(s)	204, 335, 362, 845, 1595
BsmI	GAATGC	1 cut(s)	1123
BsnI	GGCC	8 cut(s)	344, 576, 948, 1100, 1311, 1356, 1744, 2162
Bso31I	GGTCTC	1 cut(s)	2137
BsoBI	CYCGRG	3 cut(s)	222, 769, 2136
Bsp1286I	GDGCHC	2 cut(s)	1042, 1887
Bsp13I	TCCGGA	2 cut(s)	61, 1388
Bsp1407I	TGTACA	2 cut(s)	270, 2057
BspANI	GGCC	8 cut(s)	344, 576, 948, 1100, 1311, 1356, 1744, 2162
BspCNI	CTCAG	2 cut(s)	1097, 1333
BspDI	ATCGAT	1 cut(s)	1989
BspEI	TCCGGA	2 cut(s)	61, 1388
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	8 cut(s)	66, 323, 324, 437, 553, 860, 1158, 1583
BspMAI	CTGCAG	1 cut(s)	582
BspPI	GGATC	7 cut(s)	233, 639, 703, 853, 866, 1324, 1985
BspQI	GCTCTTC	3 cut(s)	1257, 1667, 1917
BspT107I	GGYRCC	1 cut(s)	435
BspTI	CTTAAG	1 cut(s)	2180
BspTNI	GGTCTC	1 cut(s)	2137
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	4 cut(s)	477, 568, 1011, 1806
BsrFI	RCCGGY	2 cut(s)	410, 2165
BsrGI	TGTACA	2 cut(s)	270, 2057
BssAI	RCCGGY	2 cut(s)	410, 2165
BssNI	GRCGYC	2 cut(s)	249, 1385
BssSI	CACGAG	1 cut(s)	1508
BssT1I	CCWWGG	3 cut(s)	1312, 1916, 2019
Bst2BI	CACGAG	1 cut(s)	1508
Bst2UI	CCWGG	6 cut(s)	346, 573, 951, 1421, 1579, 1830
Bst4CI	ACNGT	5 cut(s)	353, 669, 1189, 1258, 1556
Bst6I	CTCTTC	5 cut(s)	124, 929, 1257, 1667, 1917
BstACI	GRCGYC	2 cut(s)	249, 1385
BstAFI	CTTAAG	1 cut(s)	2180
BstAPI	GCANNNNNTGC	1 cut(s)	2036
BstAUI	TGTACA	2 cut(s)	270, 2057
BstBAI	YACGTR	1 cut(s)	1037
BstC8I	GCNNGC	2 cut(s)	578, 1137
BstDEI	CTNAG	3 cut(s)	530, 1084, 1341
BstENI	CCTNNNNNAGG	1 cut(s)	1541
BstF5I	GGATG	3 cut(s)	765, 1429, 1854
BstFNI	CGCG	1 cut(s)	203
BstMAI	GTCTC	3 cut(s)	1595, 1650, 2137
BstMWI	GCNNNNNNNGC	4 cut(s)	420, 710, 1882, 2036
BstNI	CCWGG	6 cut(s)	346, 573, 951, 1421, 1579, 1830
BstNSI	RCATGY	3 cut(s)	500, 1823, 2013
BstPAI	GACNNNNGTC	1 cut(s)	1587
BstSCI	CCNGG	9 cut(s)	221, 222, 344, 571, 854, 949, 1419, 1577, 1828
BstSFI	CTRYAG	3 cut(s)	442, 578, 1909
BstSLI	GKGCMC	1 cut(s)	1042
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	2161
BstV2I	GAAGAC	1 cut(s)	1754
BstX2I	RGATCY	2 cut(s)	858, 1316
BstXI	CCANNNNNNTGG	2 cut(s)	692, 798
BstYI	RGATCY	2 cut(s)	858, 1316
Bsu15I	ATCGAT	1 cut(s)	1989
BsuRI	GGCC	8 cut(s)	344, 576, 948, 1100, 1311, 1356, 1744, 2162
BsuTUI	ATCGAT	1 cut(s)	1989
BtgZI	GCGATG	1 cut(s)	2160
BtsCI	GGATG	3 cut(s)	765, 1429, 1854
BtsIMutI	CAGTG	4 cut(s)	660, 756, 1561, 1931
Cac8I	GCNNGC	2 cut(s)	578, 1137
Cfr10I	RCCGGY	2 cut(s)	410, 2165
Cfr13I	GGNCC	5 cut(s)	322, 551, 947, 1309, 1582
Cfr9I	CCCGGG	1 cut(s)	222
ClaI	ATCGAT	1 cut(s)	1989
Csp6I	GTAC	6 cut(s)	271, 670, 1466, 1513, 2058, 2169
CspAI	ACCGGT	1 cut(s)	2165
CspCI	CAANNNNNGTGG	2 cut(s)	904, 939
CviAII	CATG	8 cut(s)	497, 1403, 1493, 1661, 1712, 1820, 1859, 2010
CviQI	GTAC	6 cut(s)	271, 670, 1466, 1513, 2058, 2169
DdeI	CTNAG	3 cut(s)	530, 1084, 1341
DraI	TTTAAA	1 cut(s)	1623
EaeI	YGGCCR	2 cut(s)	1098, 1354
Eam1104I	CTCTTC	5 cut(s)	124, 929, 1257, 1667, 1917
EarI	CTCTTC	5 cut(s)	124, 929, 1257, 1667, 1917
EciI	GGCGGA	2 cut(s)	969, 1638
Ecl136II	GAGCTC	1 cut(s)	1885
Eco130I	CCWWGG	3 cut(s)	1312, 1916, 2019
Eco147I	AGGCCT	2 cut(s)	344, 576
Eco24I	GRGCYC	1 cut(s)	1887
Eco31I	GGTCTC	1 cut(s)	2137
Eco47I	GGWCC	3 cut(s)	322, 551, 1582
Eco53kI	GAGCTC	1 cut(s)	1885
Eco57I	CTGAAG	2 cut(s)	1253, 1761
Eco72I	CACGTG	1 cut(s)	1037
Eco88I	CYCGRG	3 cut(s)	222, 769, 2136
EcoICRI	GAGCTC	1 cut(s)	1885
EcoNI	CCTNNNNNAGG	1 cut(s)	1541
EcoO109I	RGGNCCY	2 cut(s)	322, 1582
EcoRII	CCWGG	6 cut(s)	344, 571, 949, 1419, 1577, 1828
EcoT14I	CCWWGG	3 cut(s)	1312, 1916, 2019
EcoT38I	GRGCYC	1 cut(s)	1887
ErhI	CCWWGG	3 cut(s)	1312, 1916, 2019
Esp3I	CGTCTC	1 cut(s)	1595
FaeI	CATG	8 cut(s)	500, 1406, 1496, 1664, 1715, 1823, 1862, 2013
FalI	AAGNNNNNCTT	2 cut(s)	1305, 1337
FaqI	GGGAC	5 cut(s)	204, 335, 362, 845, 1595
FatI	CATG	8 cut(s)	496, 1402, 1492, 1660, 1711, 1819, 1858, 2009
FauI	CCCGC	1 cut(s)	2060
FauNDI	CATATG	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	204, 2150
FokI	GGATG	3 cut(s)	752, 1436, 1841
FriOI	GRGCYC	1 cut(s)	1887
Fsp4HI	GCNGC	2 cut(s)	204, 2150
GluI	GCNGC	2 cut(s)	204, 2150
GsaI	CCCAGC	1 cut(s)	1310
GsuI	CTGGAG	1 cut(s)	1155
HaeIII	GGCC	8 cut(s)	344, 576, 948, 1100, 1311, 1356, 1744, 2162
HapII	CCGG	8 cut(s)	62, 223, 411, 621, 855, 872, 1389, 2166
Hin1I	GRCGYC	2 cut(s)	249, 1385
Hin1II	CATG	8 cut(s)	500, 1406, 1496, 1664, 1715, 1823, 1862, 2013
HindIII	AAGCTT	1 cut(s)	1617
HinfI	GANTC	9 cut(s)	95, 517, 526, 772, 1242, 1392, 1570, 1972, 2210
HpaII	CCGG	8 cut(s)	62, 223, 411, 621, 855, 872, 1389, 2166
HphI	GGTGA	4 cut(s)	497, 698, 1805, 1948
Hpy166II	GTNNAC	9 cut(s)	181, 756, 926, 1040, 1333, 1513, 2060, 2068, 2171
Hpy188I	TCNGA	4 cut(s)	735, 1219, 1780, 1868
Hpy8I	GTNNAC	9 cut(s)	181, 756, 926, 1040, 1333, 1513, 2060, 2068, 2171
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	5 cut(s)	311, 918, 1244, 1765, 2152
HpyCH4III	ACNGT	5 cut(s)	353, 669, 1189, 1258, 1556
HpyCH4IV	ACGT	3 cut(s)	249, 1036, 1385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	420, 710, 1882, 2036
HpyF3I	CTNAG	3 cut(s)	530, 1084, 1341
HpySE526I	ACGT	3 cut(s)	249, 1036, 1385
Hsp92I	GRCGYC	2 cut(s)	249, 1385
Hsp92II	CATG	8 cut(s)	500, 1406, 1496, 1664, 1715, 1823, 1862, 2013
KflI	GGGWCCC	1 cut(s)	322
Kpn2I	TCCGGA	2 cut(s)	61, 1388
LguI	GCTCTTC	3 cut(s)	1257, 1667, 1917
LmnI	GCTCC	5 cut(s)	4, 473, 1711, 1882, 2146
Lsp1109I	GCAGC	1 cut(s)	2161
LweI	GCATC	1 cut(s)	1001
MaeII	ACGT	3 cut(s)	249, 1036, 1385
MaeIII	GTNAC	4 cut(s)	38, 387, 1718, 1793
MbiI	CCGCTC	1 cut(s)	7
MflI	RGATCY	2 cut(s)	858, 1316
MhlI	GDGCHC	2 cut(s)	1042, 1887
MlsI	TGGCCA	1 cut(s)	1356
MluNI	TGGCCA	1 cut(s)	1356
MlyI	GAGTC	4 cut(s)	511, 781, 1386, 1564
MmeI	TCCRAC	2 cut(s)	886, 1504
Mox20I	TGGCCA	1 cut(s)	1356
MroI	TCCGGA	2 cut(s)	61, 1388
MroXI	GAANNNNTTC	3 cut(s)	907, 1161, 1266
MscI	TGGCCA	1 cut(s)	1356
MseI	TTAA	5 cut(s)	587, 845, 1622, 2001, 2181
MslI	CAYNNNNRTG	1 cut(s)	1716
Msp20I	TGGCCA	1 cut(s)	1356
MspA1I	CMGCKG	2 cut(s)	298, 2055
MspCI	CTTAAG	1 cut(s)	2180
MspI	CCGG	8 cut(s)	62, 223, 411, 621, 855, 872, 1389, 2166
MspR9I	CCNGG	9 cut(s)	223, 224, 346, 573, 856, 951, 1421, 1579, 1830
Mva1269I	GAATGC	1 cut(s)	1123
MvaI	CCWGG	6 cut(s)	346, 573, 951, 1421, 1579, 1830
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	420, 710, 1882, 2036
NciI	CCSGG	3 cut(s)	223, 224, 856
NdeI	CATATG	1 cut(s)	522
NlaIII	CATG	8 cut(s)	500, 1406, 1496, 1664, 1715, 1823, 1862, 2013
NlaIV	GGNNCC	8 cut(s)	66, 323, 324, 437, 553, 860, 1158, 1583
NmuCI	GTSAC	2 cut(s)	1718, 1793
NspI	RCATGY	3 cut(s)	500, 1823, 2013
PaeR7I	CTCGAG	1 cut(s)	2136
PceI	AGGCCT	2 cut(s)	344, 576
PciI	ACATGT	1 cut(s)	2009
PciSI	GCTCTTC	3 cut(s)	1257, 1667, 1917
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	1 cut(s)	1123
PdmI	GAANNNNTTC	3 cut(s)	907, 1161, 1266
PfeI	GAWTC	5 cut(s)	95, 526, 1242, 1972, 2210
PflFI	GACNNNGTC	1 cut(s)	1573
PflMI	CCANNNNNTGG	2 cut(s)	1363, 1475
PfoI	TCCNGGA	2 cut(s)	854, 1419
PinAI	ACCGGT	1 cut(s)	2165
PkrI	GCNGC	2 cut(s)	205, 2151
PleI	GAGTC	4 cut(s)	511, 780, 1386, 1564
PmaCI	CACGTG	1 cut(s)	1037
PmlI	CACGTG	1 cut(s)	1037
PpsI	GAGTC	4 cut(s)	511, 780, 1386, 1564
Ppu21I	YACGTR	1 cut(s)	1037
PpuMI	RGGWCCY	2 cut(s)	322, 1582
PscI	ACATGT	1 cut(s)	2009
PshAI	GACNNNNGTC	1 cut(s)	1587
PsiI	TTATAA	1 cut(s)	968
Psp124BI	GAGCTC	1 cut(s)	1887
Psp5II	RGGWCCY	2 cut(s)	322, 1582
Psp6I	CCWGG	6 cut(s)	344, 571, 949, 1419, 1577, 1828
PspCI	CACGTG	1 cut(s)	1037
PspFI	CCCAGC	1 cut(s)	1306
PspGI	CCWGG	6 cut(s)	344, 571, 949, 1419, 1577, 1828
PspN4I	GGNNCC	8 cut(s)	66, 323, 324, 437, 553, 860, 1158, 1583
PspPI	GGNCC	5 cut(s)	322, 551, 947, 1309, 1582
PspPPI	RGGWCCY	2 cut(s)	322, 1582
PstI	CTGCAG	1 cut(s)	582
PsuI	RGATCY	2 cut(s)	858, 1316
PsyI	GACNNNGTC	1 cut(s)	1573
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	6 cut(s)	272, 671, 1467, 1514, 2059, 2170
RsaNI	GTAC	6 cut(s)	271, 670, 1466, 1513, 2058, 2169
RseI	CAYNNNNRTG	1 cut(s)	1716
SacI	GAGCTC	1 cut(s)	1887
SapI	GCTCTTC	3 cut(s)	1257, 1667, 1917
SaqAI	TTAA	5 cut(s)	587, 845, 1622, 2001, 2181
SatI	GCNGC	2 cut(s)	204, 2150
Sau96I	GGNCC	5 cut(s)	322, 551, 947, 1309, 1582
SchI	GAGTC	4 cut(s)	511, 781, 1386, 1564
ScrFI	CCNGG	9 cut(s)	223, 224, 346, 573, 856, 951, 1421, 1579, 1830
SduI	GDGCHC	2 cut(s)	1042, 1887
SfaNI	GCATC	1 cut(s)	1001
SfcI	CTRYAG	3 cut(s)	442, 578, 1909
Sfr274I	CTCGAG	1 cut(s)	2136
SinI	GGWCC	3 cut(s)	322, 551, 1582
SlaI	CTCGAG	1 cut(s)	2136
SmaI	CCCGGG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	1716
SmlI	CTYRAG	5 cut(s)	1614, 1814, 1979, 2136, 2180
SmoI	CTYRAG	5 cut(s)	1614, 1814, 1979, 2136, 2180
SseBI	AGGCCT	2 cut(s)	344, 576
SspI	AATATT	1 cut(s)	739
SstI	GAGCTC	1 cut(s)	1887
StuI	AGGCCT	2 cut(s)	344, 576
StyD4I	CCNGG	9 cut(s)	221, 222, 344, 571, 854, 949, 1419, 1577, 1828
StyI	CCWWGG	3 cut(s)	1312, 1916, 2019
TaaI	ACNGT	5 cut(s)	353, 669, 1189, 1258, 1556
TaiI	ACGT	3 cut(s)	252, 1039, 1388
TaqI	TCGA	9 cut(s)	13, 20, 108, 128, 643, 894, 1165, 1989, 2137
TaqII	GACCGA	1 cut(s)	2119
TatI	WGTACW	3 cut(s)	270, 669, 2057
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	5 cut(s)	95, 526, 1242, 1972, 2210
Tru1I	TTAA	5 cut(s)	587, 845, 1622, 2001, 2181
Tru9I	TTAA	5 cut(s)	587, 845, 1622, 2001, 2181
TscAI	CASTG	4 cut(s)	667, 763, 1561, 1938
TseFI	GTSAC	2 cut(s)	1718, 1793
TseI	GCWGC	1 cut(s)	2149
Tsp45I	GTSAC	2 cut(s)	1718, 1793
TspGWI	ACGGA	2 cut(s)	1064, 1577
TspMI	CCCGGG	1 cut(s)	222
TspRI	CASTG	4 cut(s)	667, 763, 1561, 1938
Tth111I	GACNNNGTC	1 cut(s)	1573
Van91I	CCANNNNNTGG	2 cut(s)	1363, 1475
Vha464I	CTTAAG	1 cut(s)	2180
VneI	GTGCAC	1 cut(s)	1038
VpaK11BI	GGWCC	3 cut(s)	322, 551, 1582
XagI	CCTNNNNNAGG	1 cut(s)	1541
XapI	RAATTY	6 cut(s)	489, 583, 793, 1359, 1528, 2191
XceI	RCATGY	3 cut(s)	500, 1823, 2013
XhoI	CTCGAG	1 cut(s)	2136
XmaI	CCCGGG	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	3 cut(s)	907, 1161, 1266
ZraI	GACGTC	2 cut(s)	250, 1386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.