Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041425.1

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2059

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgatttctttgtgtggattggagtttaaatgtttaagattcctcattgctgatttccaccaattttattcttttactctatgcattactacagccacagctcttcaagagcttcacaaatcccttaacagtccaccacagctgacgggttggagattggttggtggcgatccttgcgatgaatcgtggactggagtgtcatattctgggtctcatgttacagagattgagcttcatggtctaaacctttctgggtttatttctgctgggctccataatctctactacctgaagcgaataaatctgagccacaatatgttatctggagccttaggcaacatttttactggcctcaagaatttaagacaactggatttgtcctataataactttaccgctctgccaagttcgtttggatccctcacaaatctcaatggattgtacttgcacgataaccgtttgactggatcacttacttctcagtccagtcaacaccgcattggtgctgctgctcaacctgatcagaacgacagcattcccgccgttgctcaaccagggaagcaagctgccattgctgctgctgctcaaccaggccaacaacctgccgttgctactgttgctcagccaggccaacaagcccccattgctggttctgttcaaacccccttcattgtttcccctgatcctgatgtcttacctgccacttacatctcctcaaagaagaaacggaaaatatcctttggaacatttgaaggtggtacgtggcagatttccgatggaattagatttcatactgcagattctcatgagaaagtgataaaactggcatctcctgctccgagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

281

Amino Acids

30.2

Weight (kDa)

8.33

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
Acc36I	ACCTGC	2 cut(s)	610, 706
AccBSI	CCGCTC	1 cut(s)	398
AciI	CCGC	3 cut(s)	396, 496, 540
AclWI	GGATC	5 cut(s)	164, 411, 424, 475, 677
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	443, 760
AfiI	CCNNNNNNNGG	1 cut(s)	647
AgsI	TTSAA	3 cut(s)	107, 659, 752
AjnI	CCWGG	3 cut(s)	553, 589, 625
AluBI	AGCT	5 cut(s)	101, 112, 142, 232, 566
AluI	AGCT	5 cut(s)	101, 112, 142, 232, 566
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	5 cut(s)	164, 411, 424, 475, 677
AoxI	GGCC	3 cut(s)	349, 592, 628
ApeKI	GCWGC	6 cut(s)	506, 509, 566, 575, 578, 581
ApoI	RAATTY	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	273
BbvI	GCAGC	6 cut(s)	493, 496, 553, 562, 565, 568
BccI	CCATC	1 cut(s)	770
BceAI	ACGGC	2 cut(s)	527, 590
BciT130I	CCWGG	3 cut(s)	555, 591, 627
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	90, 795
BfuAI	ACCTGC	2 cut(s)	610, 706
BisI	GCNGC	6 cut(s)	507, 510, 567, 576, 579, 582
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	6 cut(s)	508, 511, 568, 577, 580, 583
Bme1390I	CCNGG	3 cut(s)	555, 591, 627
BmiI	GGNNCC	3 cut(s)	272, 328, 418
BmrFI	CCNGG	3 cut(s)	555, 591, 627
BmsI	GCATC	1 cut(s)	836
BpmI	CTGGAG	2 cut(s)	213, 345
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	762
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	554, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	6 cut(s)	196, 352, 375, 469, 486, 828
Bse21I	CCTNAGG	1 cut(s)	331
Bse3DI	GCAATG	3 cut(s)	45, 570, 642
BseBI	CCWGG	3 cut(s)	555, 591, 627
BseDI	CCNNGG	2 cut(s)	554, 839
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMI	GCAATG	3 cut(s)	45, 570, 642
BseMII	CTCAG	3 cut(s)	296, 494, 635
BseNI	ACTGG	6 cut(s)	196, 352, 375, 469, 486, 828
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	6 cut(s)	493, 496, 553, 562, 565, 568
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	3 cut(s)	351, 594, 630
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	3 cut(s)	351, 594, 630
Bso31I	GGTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	169, 416, 467, 520, 682
Bsp1720I	GCTNAGC	1 cut(s)	621
BspACI	CCGC	3 cut(s)	396, 496, 540
BspANI	GGCC	3 cut(s)	351, 594, 630
BspCNI	CTCAG	3 cut(s)	297, 493, 634
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	3 cut(s)	272, 328, 418
BspMAI	CTGCAG	1 cut(s)	799
BspMI	ACCTGC	2 cut(s)	610, 706
BspPI	GGATC	5 cut(s)	164, 411, 424, 475, 677
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	398
BsrDI	GCAATG	3 cut(s)	45, 570, 642
BsrI	ACTGG	6 cut(s)	196, 352, 375, 469, 486, 828
BssECI	CCNNGG	2 cut(s)	554, 839
BssMI	GATC	5 cut(s)	169, 416, 467, 520, 682
Bst2UI	CCWGG	3 cut(s)	555, 591, 627
Bst4CI	ACNGT	3 cut(s)	131, 458, 616
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstBAI	YACGTR	1 cut(s)	762
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	4 cut(s)	305, 331, 480, 621
BstKTI	GATC	5 cut(s)	172, 419, 470, 523, 685
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	5 cut(s)	169, 416, 467, 520, 682
BstMWI	GCNNNNNNNGC	7 cut(s)	174, 572, 575, 581, 617, 644, 833
BstNI	CCWGG	3 cut(s)	555, 591, 627
BstSCI	CCNGG	3 cut(s)	553, 589, 625
BstSFI	CTRYAG	2 cut(s)	90, 795
BstV1I	GCAGC	6 cut(s)	493, 496, 553, 562, 565, 568
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
Bsu36I	CCTNAGG	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	351, 594, 630
BtgZI	GCGATG	1 cut(s)	192
BveI	ACCTGC	2 cut(s)	610, 706
Cac8I	GCNNGC	1 cut(s)	564
CciI	TCATGA	1 cut(s)	805
Csp6I	GTAC	2 cut(s)	442, 759
CviAII	CATG	3 cut(s)	215, 236, 806
CviQI	GTAC	2 cut(s)	442, 759
DdeI	CTNAG	4 cut(s)	305, 331, 480, 621
DpnI	GATC	5 cut(s)	171, 418, 469, 522, 684
DpnII	GATC	5 cut(s)	169, 416, 467, 520, 682
DraI	TTTAAA	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	331
EcoRII	CCWGG	3 cut(s)	553, 589, 625
EcoT22I	ATGCAT	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	3 cut(s)	218, 239, 809
FaiI	YATR	9 cut(s)	82, 202, 216, 237, 276, 317, 384, 792, 807
FatI	CATG	3 cut(s)	214, 235, 805
FauI	CCCGC	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	6 cut(s)	507, 510, 567, 576, 579, 582
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	6 cut(s)	507, 510, 567, 576, 579, 582
GluI	GCNGC	6 cut(s)	507, 510, 567, 576, 579, 582
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	2 cut(s)	213, 345
HaeIII	GGCC	3 cut(s)	351, 594, 630
Hin1II	CATG	3 cut(s)	218, 239, 809
HincII	GTYRAC	1 cut(s)	491
HindII	GTYRAC	1 cut(s)	491
HinfI	GANTC	3 cut(s)	39, 182, 800
Hpy166II	GTNNAC	3 cut(s)	134, 189, 491
Hpy188I	TCNGA	4 cut(s)	306, 525, 775, 840
Hpy188III	TCNNGA	5 cut(s)	107, 324, 355, 686, 806
Hpy8I	GTNNAC	3 cut(s)	134, 189, 491
HpyAV	CCTTC	2 cut(s)	676, 746
HpyCH4III	ACNGT	3 cut(s)	131, 458, 616
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	3 cut(s)	84, 448, 797
HpyF10VI	GCNNNNNNNGC	7 cut(s)	174, 572, 575, 581, 617, 644, 833
HpyF3I	CTNAG	4 cut(s)	305, 331, 480, 621
HpySE526I	ACGT	1 cut(s)	761
Hsp92II	CATG	3 cut(s)	218, 239, 809
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	169, 416, 467, 520, 682
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	276, 326, 841
Lsp1109I	GCAGC	6 cut(s)	493, 496, 553, 562, 565, 568
LweI	GCATC	1 cut(s)	836
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	5 cut(s)	171, 418, 469, 522, 684
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	5 cut(s)	169, 416, 467, 520, 682
MboII	GAAGA	2 cut(s)	95, 733
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	3 cut(s)	62, 358, 780
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	53, 362, 431, 724, 834
Mph1103I	ATGCAT	1 cut(s)	86
MseI	TTAA	4 cut(s)	27, 35, 126, 362
MspA1I	CMGCKG	1 cut(s)	142
MspR9I	CCNGG	3 cut(s)	555, 591, 627
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	3 cut(s)	555, 591, 627
MwoI	GCNNNNNNNGC	7 cut(s)	174, 572, 575, 581, 617, 644, 833
NdeII	GATC	5 cut(s)	169, 416, 467, 520, 682
NlaIII	CATG	3 cut(s)	218, 239, 809
NlaIV	GGNNCC	3 cut(s)	272, 328, 418
NsiI	ATGCAT	1 cut(s)	86
PagI	TCATGA	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	3 cut(s)	39, 182, 800
PkrI	GCNGC	6 cut(s)	508, 511, 568, 577, 580, 583
Ppu21I	YACGTR	1 cut(s)	762
Psp6I	CCWGG	3 cut(s)	553, 589, 625
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	3 cut(s)	553, 589, 625
PspN4I	GGNNCC	3 cut(s)	272, 328, 418
PstI	CTGCAG	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	2 cut(s)	443, 760
RsaNI	GTAC	2 cut(s)	442, 759
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	27, 35, 126, 362
SatI	GCNGC	6 cut(s)	507, 510, 567, 576, 579, 582
Sau3AI	GATC	5 cut(s)	169, 416, 467, 520, 682
ScrFI	CCNGG	3 cut(s)	555, 591, 627
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	836
SfcI	CTRYAG	2 cut(s)	90, 795
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	62, 358, 780
SsiI	CCGC	3 cut(s)	396, 496, 540
StyD4I	CCNGG	3 cut(s)	553, 589, 625
TaaI	ACNGT	3 cut(s)	131, 458, 616
TaiI	ACGT	1 cut(s)	764
TasI	AATT	3 cut(s)	62, 358, 780
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	3 cut(s)	39, 182, 800
Tru1I	TTAA	4 cut(s)	27, 35, 126, 362
Tru9I	TTAA	4 cut(s)	27, 35, 126, 362
TseI	GCWGC	6 cut(s)	506, 509, 566, 575, 578, 581
TspDTI	ATGAA	4 cut(s)	195, 224, 658, 779
TspGWI	ACGGA	1 cut(s)	742
XapI	RAATTY	1 cut(s)	358
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.