Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

75028564 .. 75029952

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52755

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAACTCATATGTACAAATATGGCACGCAACAAATTCACTGGAAATATCCCCCAGAGTTTATCTGACATGAAATATCTTGTGAATTTGAATCTAAGCCGCAATTTGTTATCAGGACCCATTGGCAATGTTTTTAATGGCCTACAAAGTCTAAAGCAATTGTACTTGCAGAATAATCAATTCACTCCATCAGTTGTTTATCCAGTAATTGATATGAAAATCCAAGAAAACTATGGTGTCGTCCCAAACCATTTTCAGTCCATACCAAATTTGTGGATCGGGGGTAATGGTTGTGAAGTATCGGGGAACAACTGTCCACCCTGGGATGTTCCTCTGGAAACCAAGGCAAGGGACTCAGAACAAAACACCTATCTCCCTCCAGCAACTCAGTCAAGCGTTAAGAACTCAGGACACAAGAATAAGAAGCTTGGAATATTCGTCACTATAATTGGTTGCATCGTGGCGGCAGCTGCAGCCATAGCATGCATGGCAGCCCACCAGGATGCAAACAATGAACCACCACCTGACCAGCCTGCTCGGCTTCAATTTTCTCCCCCCAGGCCACCTGAGAGGCTAGAACTTGATGGCAGGTTCATGGCAGGACAGAATTTCGAAATAATTGTTGCTGGTAAAGCCTATCATGCTGATACAGAAGAAAAAGTAGTGAAGATAGCAAAGAAAGACCAAGAGCCAGAGGAACCCCCTCCACAAGTTAAACTTGACACTTTCATCGACCATGTTGAGGAAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

251

Amino Acids

27.75

Weight (kDa)

5.42

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	10 - 61	3.3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	579
AciI	CCGC	2 cut(s)	100, 464
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	4 cut(s)	35, 85, 268, 607
AfaI	GTAC	2 cut(s)	16, 164
AfiI	CCNNNNNNNGG	2 cut(s)	348, 742
AgsI	TTSAA	2 cut(s)	91, 545
AjnI	CCWGG	3 cut(s)	320, 498, 557
AluBI	AGCT	2 cut(s)	427, 470
AluI	AGCT	2 cut(s)	427, 470
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	2 cut(s)	139, 560
ApeKI	GCWGC	4 cut(s)	467, 470, 473, 491
ApoI	RAATTY	4 cut(s)	35, 85, 268, 607
AspS9I	GGNCC	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	457, 479, 485, 503
BccI	CCATC	2 cut(s)	196, 578
BciT130I	CCWGG	3 cut(s)	322, 500, 559
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	579
BglI	GCCNNNNNGGC	1 cut(s)	538
BisI	GCNGC	6 cut(s)	100, 465, 468, 471, 474, 492
BlsI	GCNGC	6 cut(s)	101, 466, 469, 472, 475, 493
Bme1390I	CCNGG	3 cut(s)	322, 500, 559
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	118, 699
BmrFI	CCNGG	3 cut(s)	322, 500, 559
BmsI	GCATC	2 cut(s)	465, 493
BpmI	CTGGAG	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	612
BsaJI	CCNNGG	4 cut(s)	320, 321, 342, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 742
Bse1I	ACTGG	2 cut(s)	46, 203
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	3 cut(s)	322, 500, 559
BseDI	CCNNGG	4 cut(s)	320, 321, 342, 557
BseGI	GGATG	2 cut(s)	331, 508
BseLI	CCNNNNNNNGG	2 cut(s)	348, 742
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	4 cut(s)	369, 401, 420, 558
BseNI	ACTGG	2 cut(s)	46, 203
BseXI	GCAGC	4 cut(s)	457, 479, 485, 503
BshFI	GGCC	2 cut(s)	141, 562
BslFI	GGGAC	2 cut(s)	227, 365
BslI	CCNNNNNNNGG	2 cut(s)	348, 742
BsmFI	GGGAC	2 cut(s)	227, 365
BsnI	GGCC	2 cut(s)	141, 562
Bsp119I	TTCGAA	1 cut(s)	612
Bsp1407I	TGTACA	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	100, 464
BspANI	GGCC	2 cut(s)	141, 562
BspCNI	CTCAG	4 cut(s)	368, 400, 419, 559
BspLI	GGNNCC	2 cut(s)	118, 699
BspMAI	CTGCAG	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	579
BspPI	GGATC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	46, 203
BssECI	CCNNGG	4 cut(s)	320, 321, 342, 557
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	322, 500, 559
Bst4CI	ACNGT	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	612
BstC8I	GCNNGC	3 cut(s)	28, 484, 534
BstDEI	CTNAG	5 cut(s)	95, 355, 387, 406, 567
BstF5I	GGATG	2 cut(s)	331, 508
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	7 cut(s)	470, 473, 479, 488, 538, 632, 641
BstNI	CCWGG	3 cut(s)	322, 500, 559
BstNSI	RCATGY	1 cut(s)	486
BstSCI	CCNGG	3 cut(s)	320, 498, 557
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	4 cut(s)	457, 479, 485, 503
BstXI	CCANNNNNNTGG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	141, 562
BtsCI	GGATG	2 cut(s)	331, 508
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	579
Cac8I	GCNNGC	3 cut(s)	28, 484, 534
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	15, 163
CviAII	CATG	6 cut(s)	70, 483, 487, 595, 641, 737
CviQI	GTAC	2 cut(s)	15, 163
DdeI	CTNAG	5 cut(s)	95, 355, 387, 406, 567
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	3 cut(s)	320, 498, 557
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	6 cut(s)	73, 486, 490, 598, 644, 740
FalI	AAGNNNNNCTT	2 cut(s)	702, 734
FaqI	GGGAC	2 cut(s)	227, 365
FatI	CATG	6 cut(s)	69, 482, 486, 594, 640, 736
FauNDI	CATATG	1 cut(s)	11
Fnu4HI	GCNGC	6 cut(s)	100, 465, 468, 471, 474, 492
FokI	GGATG	2 cut(s)	338, 515
Fsp4HI	GCNGC	6 cut(s)	100, 465, 468, 471, 474, 492
FspBI	CTAG	1 cut(s)	575
GluI	GCNGC	6 cut(s)	100, 465, 468, 471, 474, 492
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	141, 562
Hin1II	CATG	6 cut(s)	73, 486, 490, 598, 644, 740
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	2 cut(s)	91, 353
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	2 cut(s)	67, 358
Hpy188III	TCNNGA	3 cut(s)	114, 335, 408
Hpy8I	GTNNAC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	6 cut(s)	4, 169, 456, 473, 486, 506
HpyF10VI	GCNNNNNNNGC	7 cut(s)	470, 473, 479, 488, 538, 632, 641
HpyF3I	CTNAG	5 cut(s)	95, 355, 387, 406, 567
Hsp92II	CATG	6 cut(s)	73, 486, 490, 598, 644, 740
Kzo9I	GATC	1 cut(s)	276
Lsp1109I	GCAGC	4 cut(s)	457, 479, 485, 503
LweI	GCATC	2 cut(s)	465, 493
MaeI	CTAG	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	2 cut(s)	665, 679
MfeI	CAATTG	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	6 cut(s)	342, 387, 564, 688, 714, 736
Mph1103I	ATGCAT	1 cut(s)	488
MseI	TTAA	3 cut(s)	135, 399, 714
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	470
MspR9I	CCNGG	3 cut(s)	322, 500, 559
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	3 cut(s)	322, 500, 559
MwoI	GCNNNNNNNGC	7 cut(s)	470, 473, 479, 488, 538, 632, 641
NdeI	CATATG	1 cut(s)	11
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	6 cut(s)	73, 486, 490, 598, 644, 740
NlaIV	GGNNCC	2 cut(s)	118, 699
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	1 cut(s)	486
NspV	TTCGAA	1 cut(s)	612
PaeI	GCATGC	1 cut(s)	486
PasI	CCCWGGG	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	6 cut(s)	101, 466, 469, 472, 475, 493
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	3 cut(s)	320, 498, 557
PspGI	CCWGG	3 cut(s)	320, 498, 557
PspN4I	GGNNCC	2 cut(s)	118, 699
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	2 cut(s)	16, 164
RsaNI	GTAC	2 cut(s)	15, 163
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	135, 399, 714
SatI	GCNGC	6 cut(s)	100, 465, 468, 471, 474, 492
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	322, 500, 559
SetI	ASST	6 cut(s)	371, 429, 472, 526, 568, 593
SfaNI	GCATC	2 cut(s)	465, 493
SfcI	CTRYAG	1 cut(s)	471
SfuI	TTCGAA	1 cut(s)	612
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	501
SphI	GCATGC	1 cut(s)	486
SsiI	CCGC	2 cut(s)	100, 464
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	3 cut(s)	320, 498, 557
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	612, 732
TatI	WGTACW	2 cut(s)	14, 162
TauI	GCSGC	2 cut(s)	102, 467
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	135, 399, 714
Tru9I	TTAA	3 cut(s)	135, 399, 714
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	4 cut(s)	467, 470, 473, 491
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	86, 230, 528, 583, 718
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	4 cut(s)	35, 85, 268, 607
XceI	RCATGY	1 cut(s)	486
XcmI	CCANNNNNNNNNTGG	2 cut(s)	230, 484
XspI	CTAG	1 cut(s)	575
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.