Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

24906479 .. 24910192

Gene Structure 3714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G256200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCAAAACAGAGCGTATGGATGTGCTTCACATTAACTTTCATGTCGGCTATTCTGGCTTTCCAAGCGGTGGCATTCACTGCTCCAAGTGATGTCACGGCTCTTCAAGATTTTTACGAGGCTCTTAACAGCCCTCCGCAGCTGAAGGGATGGAGATTGGATGGTGGGGATCCTTGTGGTGAATCATGGGTTGGAGTGTCATGTTCTGGGTCATCTGTAATACACCTTAAACTTCAGGGGCTGAACCTCTCGGGGTATCTTAGTGCACAGCTCCATAATATGTTCAACCTGAAGACACTGGATGTTAGTTCCAATAACATTGTGGGTGAAATTCCATATGTCTTACCCCCAAATGCCACTCATATCAATCTGGCATGCAACTCTTTGACCTCTATTCCTCATTCTTTACCTGCCATGAAAAGTCTCCGACATTTGAATCTAAGCCACAATTTGTTATCTGGACCTGTTGGCAATGTTTTTACAGGCCTGCAGAATTTAAGAGAACTGGATTTGTCATACAATAACTTTACTGGAGATCCCAATTCATTCAAATCCTTGGCAAACCTCACTGGATTGTTCTTGCAGAACAACAAATTTAGTAGATCAGTTGCTTATCTAGTTGAGCTTCCACTAACTAATCTGAACATCGAAAACAATGATCATCAGATCAATTTTTCCAATGTTTTCCAAGAAGAACACAAGAGTAAGATAAAAAAAAAAGATATATCTTGCTCTTATGTTCACTGTGTTTATTGGGGTTGGCCTAGTATTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

28.48

Weight (kDa)

6.74

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	2 cut(s)	68, 137
AclWI	GGATC	3 cut(s)	164, 177, 530
AcsI	RAATTY	3 cut(s)	330, 493, 593
AcuI	CTGAAG	3 cut(s)	164, 218, 311
AfiI	CCNNNNNNNGG	2 cut(s)	70, 770
AgsI	TTSAA	4 cut(s)	107, 286, 436, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	3 cut(s)	142, 271, 625
AluI	AGCT	3 cut(s)	142, 271, 625
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	428
Alw44I	GTGCAC	1 cut(s)	264
AlwI	GGATC	3 cut(s)	164, 177, 530
AlwNI	CAGNNNCTG	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	2 cut(s)	484, 761
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	3 cut(s)	330, 493, 593
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	191, 338
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	268
BamHI	GGATCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	144, 155
BceAI	ACGGC	1 cut(s)	114
BclI	TGATCA	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	3 cut(s)	617, 765, 775
BfmI	CTRYAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 770
Bse1I	ACTGG	4 cut(s)	303, 510, 535, 574
Bse3DI	GCAATG	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	4 cut(s)	27, 155, 166, 307
BseLI	CCNNNNNNNGG	2 cut(s)	70, 770
BseMI	GCAATG	1 cut(s)	478
BseNI	ACTGG	4 cut(s)	303, 510, 535, 574
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	2 cut(s)	486, 763
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	70, 770
BsmAI	GTCTC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	486, 763
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	5 cut(s)	169, 535, 602, 658, 666
BspACI	CCGC	2 cut(s)	68, 137
BspANI	GGCC	2 cut(s)	486, 763
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	3 cut(s)	164, 177, 530
BspQI	GCTCTTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	478
BsrI	ACTGG	4 cut(s)	303, 510, 535, 574
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	5 cut(s)	169, 535, 602, 658, 666
BssT1I	CCWWGG	1 cut(s)	555
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	376, 488
BstDEI	CTNAG	2 cut(s)	260, 440
BstF5I	GGATG	4 cut(s)	27, 155, 166, 307
BstKTI	GATC	5 cut(s)	172, 538, 605, 661, 669
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	5 cut(s)	169, 535, 602, 658, 666
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 65, 80
BstNSI	RCATGY	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	169, 535
BstYI	RGATCY	2 cut(s)	169, 535
BsuRI	GGCC	2 cut(s)	486, 763
BtsCI	GGATG	4 cut(s)	27, 155, 166, 307
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	4 cut(s)	78, 296, 567, 742
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	376, 488
CaiI	CAGNNNCTG	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	461
CviAII	CATG	5 cut(s)	43, 186, 201, 375, 415
DdeI	CTNAG	2 cut(s)	260, 440
DpnI	GATC	5 cut(s)	171, 537, 604, 660, 668
DpnII	GATC	5 cut(s)	169, 535, 602, 658, 666
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	555
Eco147I	AGGCCT	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	3 cut(s)	164, 218, 311
Eco88I	CYCGRG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	5 cut(s)	46, 189, 204, 378, 418
FatI	CATG	5 cut(s)	42, 185, 200, 374, 414
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	4 cut(s)	34, 162, 173, 314
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	3 cut(s)	617, 765, 775
GluI	GCNGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	486, 763
Hin1II	CATG	5 cut(s)	46, 189, 204, 378, 418
HinfI	GANTC	2 cut(s)	182, 436
HphI	GGTGA	2 cut(s)	191, 338
Hpy166II	GTNNAC	2 cut(s)	266, 742
Hpy188I	TCNGA	3 cut(s)	428, 642, 666
Hpy188III	TCNNGA	2 cut(s)	107, 459
Hpy8I	GTNNAC	2 cut(s)	266, 742
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4V	TGCA	4 cut(s)	266, 378, 490, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 65, 80
HpyF3I	CTNAG	2 cut(s)	260, 440
Hsp92II	CATG	5 cut(s)	46, 189, 204, 378, 418
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	5 cut(s)	169, 535, 602, 658, 666
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	88, 276
Lsp1109I	GCAGC	1 cut(s)	151
MaeI	CTAG	3 cut(s)	617, 765, 775
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	171, 537, 604, 660, 668
MboI	GATC	5 cut(s)	169, 535, 602, 658, 666
MboII	GAAGA	3 cut(s)	95, 304, 704
MflI	RGATCY	2 cut(s)	169, 535
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	6 cut(s)	330, 448, 493, 541, 593, 670
MmeI	TCCRAC	2 cut(s)	172, 451
MnlI	CCTC	6 cut(s)	112, 144, 257, 400, 408, 575
MseI	TTAA	4 cut(s)	35, 126, 228, 497
MspA1I	CMGCKG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	56, 65, 80
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	5 cut(s)	169, 535, 602, 658, 666
NlaIII	CATG	5 cut(s)	46, 189, 204, 378, 418
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	182, 436
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	492
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	169, 535
PvuII	CAGCTG	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	35, 126, 228, 497
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	5 cut(s)	169, 535, 602, 658, 666
Sau96I	GGNCC	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	488
SinI	GGWCC	1 cut(s)	461
SphI	GCATGC	1 cut(s)	378
Sse9I	AATT	6 cut(s)	330, 448, 493, 541, 593, 670
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	2 cut(s)	68, 137
SspMI	CTAG	3 cut(s)	617, 765, 775
StuI	AGGCCT	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	746
TaqI	TCGA	1 cut(s)	648
TasI	AATT	6 cut(s)	330, 448, 493, 541, 593, 670
TfiI	GAWTC	2 cut(s)	182, 436
Tru1I	TTAA	4 cut(s)	35, 126, 228, 497
Tru9I	TTAA	4 cut(s)	35, 126, 228, 497
TscAI	CASTG	4 cut(s)	85, 303, 574, 749
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	31, 431, 534
TspRI	CASTG	4 cut(s)	85, 303, 574, 749
Van91I	CCANNNNNTGG	1 cut(s)	70
VneI	GTGCAC	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	3 cut(s)	330, 493, 593
XceI	RCATGY	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XspI	CTAG	3 cut(s)	617, 765, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.