Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00072

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

202776 .. 206642

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAGAAGCTGCATCGGTCCGTGTACTTCATTGCGATTTTCGTCACGGCTGTTCTGGTGGTGTCCTCGGCCGAGATTTTTACTGATCCGCTCGACGTCGTAGCTCTTCAAGATCTCTACATGACCCTCAACCAACCACCACAGCTGACGGGTTGGAGATTGGATGGTGGGGATCCTTGCGACCAAGACTGGAAAGGAGTGTTATGCTTTGGCTCTTCTGTGACATACCTTGTACTTAATGGTCTAAACCTCTCTGGGTATATTACTCCCGAGATCTATAATCTCTACAGTTTGAACCTACTGGATATTAGTTCCAATACCATTGGTGGTGAAATTCCATATGTCTTACCCCCCAATGCGACTTATATAAATATGGCATACAACAATTTGATCCAAAATATTCCCCCATCCTTACCTGGCATGAAAAATCTCCGACATTTGAATCTGAGCCACAATTTGTTATCTGGACCCATTGGCAATGTTTTTACCGGCCTACAGAATTTAAGAGAAATGGATTTGTCACATAATAACTTTACTGGAGATCTTCCAAGTTCATTTGAATCCCTCACAAATCTCACTGGACTGTACTTGCAGAATAACCGATTCACTGGATCAGTTTCTTACCTAGCTGAACTTCCACTAATTGATCTGAATATCGAATGCAATTATTTCAGTGGTATCATCCCCAGACATTTTCAGTCCATACCAAATTTATGTACACATCAAAATATTGATTTCCTTTCAGGATCGGGGGAAATAGTCTTCATCTTCCAGGGCACAACTATCCACCCCCCTCTGGAAAAGCAGGCAAGTGTCATTGAACAGAACATCCACCCCCCTCTAGCAACTCGGTCAAGTGCCATGGAGAAGAGCAACCCCTGTACCAAATTAGGTGGACACAAGAAGAGGAGGCGGAAGACTAAAACCAAGGTATCCCTCAACGTCCAAGCTACAGAAAGTACACCTCAACTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

325

Amino Acids

36.08

Weight (kDa)

6.3

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	120 - 178	1e-09	Leucine rich repeat
LRR_8	PF13855	161 - 202	2.7e-08	Leucine rich repeat
LRR_4	PF12799	166 - 202	1e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	91
AciI	CCGC	2 cut(s)	89, 913
AclWI	GGATC	6 cut(s)	80, 167, 180, 385, 619, 754
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	3 cut(s)	333, 499, 709
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	6 cut(s)	26, 234, 587, 718, 883, 961
AfiI	CCNNNNNNNGG	1 cut(s)	796
AgsI	TTSAA	5 cut(s)	110, 295, 442, 560, 821
AjnI	CCWGG	2 cut(s)	415, 771
AloI	GAACNNNNNNTCC	2 cut(s)	813, 845
AluBI	AGCT	5 cut(s)	10, 104, 145, 629, 950
AluI	AGCT	5 cut(s)	10, 104, 145, 629, 950
AlwI	GGATC	6 cut(s)	80, 167, 180, 385, 619, 754
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	69, 490
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	3 cut(s)	333, 499, 709
AspS9I	GGNCC	2 cut(s)	18, 467
AsuHPI	GGTGA	1 cut(s)	341
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	18, 467
BaeGI	GKGCMC	1 cut(s)	779
BaeI	ACNNNNGTAYC	4 cut(s)	865, 898, 915, 948
BamHI	GGATCC	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	754, 923
BccI	CCATC	2 cut(s)	158, 415
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	2 cut(s)	417, 773
BciVI	GTATCC	1 cut(s)	943
BfaI	CTAG	2 cut(s)	626, 842
BfmI	CTRYAG	3 cut(s)	286, 494, 951
BfuI	GTATCC	1 cut(s)	943
BglII	AGATCT	3 cut(s)	112, 273, 541
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	417, 773
Bme18I	GGWCC	2 cut(s)	18, 467
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	18, 467
BmiI	GGNNCC	2 cut(s)	174, 469
BmrFI	CCNGG	2 cut(s)	417, 773
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	2 cut(s)	754, 923
BpmI	CTGGAG	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	4 cut(s)	66, 772, 861, 927
Bsc4I	CCNNNNNNNGG	1 cut(s)	796
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	5 cut(s)	194, 306, 541, 583, 613
Bse3DI	GCAATG	2 cut(s)	30, 484
BseBI	CCWGG	2 cut(s)	417, 773
BseDI	CCNNGG	4 cut(s)	66, 772, 861, 927
BseGI	GGATG	4 cut(s)	169, 407, 681, 828
BseLI	CCNNNNNNNGG	1 cut(s)	796
BseMI	GCAATG	2 cut(s)	30, 484
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	5 cut(s)	194, 306, 541, 583, 613
BseRI	GAGGAG	1 cut(s)	922
BseSI	GKGCMC	1 cut(s)	779
BseX3I	CGGCCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	71, 492
BsiEI	CGRYCG	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	796
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	2 cut(s)	71, 492
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp1407I	TGTACA	1 cut(s)	716
Bsp143I	GATC	9 cut(s)	85, 112, 172, 273, 390, 541, 611, 646, 746
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	2 cut(s)	89, 913
BspANI	GGCC	2 cut(s)	71, 492
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	174, 469
BspPI	GGATC	6 cut(s)	80, 167, 180, 385, 619, 754
BspQI	GCTCTTC	3 cut(s)	111, 220, 863
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	30, 484
BsrFI	RCCGGY	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	716
BsrI	ACTGG	5 cut(s)	194, 306, 541, 583, 613
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	4 cut(s)	66, 772, 861, 927
BssMI	GATC	9 cut(s)	85, 112, 172, 273, 390, 541, 611, 646, 746
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	861, 927
Bst2UI	CCWGG	2 cut(s)	417, 773
Bst4CI	ACNGT	2 cut(s)	290, 585
Bst6I	CTCTTC	4 cut(s)	111, 220, 863, 899
BstACI	GRCGYC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	1 cut(s)	446
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	4 cut(s)	169, 407, 681, 828
BstKTI	GATC	9 cut(s)	88, 115, 175, 276, 393, 544, 614, 649, 749
BstMBI	GATC	9 cut(s)	85, 112, 172, 273, 390, 541, 611, 646, 746
BstMCI	CGRYCG	1 cut(s)	72
BstNI	CCWGG	2 cut(s)	417, 773
BstSCI	CCNGG	2 cut(s)	415, 771
BstSFI	CTRYAG	3 cut(s)	286, 494, 951
BstSLI	GKGCMC	1 cut(s)	779
BstV2I	GAAGAC	2 cut(s)	754, 923
BstX2I	RGATCY	4 cut(s)	112, 172, 273, 541
BstYI	RGATCY	4 cut(s)	112, 172, 273, 541
BstZI	CGGCCG	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	2 cut(s)	71, 492
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	4 cut(s)	169, 407, 681, 828
BtsIMutI	CAGTG	3 cut(s)	576, 606, 679
Cac8I	GCNNGC	1 cut(s)	807
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	2 cut(s)	18, 467
CpoI	CGGWCCG	1 cut(s)	18
Csp6I	GTAC	6 cut(s)	25, 233, 586, 717, 882, 960
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CspI	CGGWCCG	1 cut(s)	18
CviAII	CATG	3 cut(s)	121, 421, 862
CviQI	GTAC	6 cut(s)	25, 233, 586, 717, 882, 960
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	9 cut(s)	87, 114, 174, 275, 392, 543, 613, 648, 748
DpnII	GATC	9 cut(s)	85, 112, 172, 273, 390, 541, 611, 646, 746
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	4 cut(s)	111, 220, 863, 899
EarI	CTCTTC	4 cut(s)	111, 220, 863, 899
EciI	GGCGGA	1 cut(s)	928
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	861, 927
Eco47I	GGWCC	2 cut(s)	18, 467
Eco52I	CGGCCG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	415, 771
EcoT14I	CCWWGG	2 cut(s)	861, 927
ErhI	CCWWGG	2 cut(s)	861, 927
FaeI	CATG	3 cut(s)	124, 424, 865
FatI	CATG	3 cut(s)	120, 420, 861
FauNDI	CATATG	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	4 cut(s)	176, 394, 668, 815
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	2 cut(s)	626, 842
GluI	GCNGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	71, 492
HapII	CCGG	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	124, 424, 865
HinfI	GANTC	3 cut(s)	442, 560, 603
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	4 cut(s)	25, 719, 896, 962
Hpy188I	TCNGA	3 cut(s)	434, 447, 651
Hpy188III	TCNNGA	5 cut(s)	110, 269, 465, 744, 797
Hpy8I	GTNNAC	4 cut(s)	25, 719, 896, 962
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyCH4III	ACNGT	2 cut(s)	290, 585
HpyCH4IV	ACGT	2 cut(s)	96, 942
HpyCH4V	TGCA	3 cut(s)	13, 592, 663
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	2 cut(s)	96, 942
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	124, 424, 865
Kzo9I	GATC	9 cut(s)	85, 112, 172, 273, 390, 541, 611, 646, 746
LguI	GCTCTTC	3 cut(s)	111, 220, 863
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	626, 842
MaeII	ACGT	2 cut(s)	96, 942
MaeIII	GTNAC	3 cut(s)	43, 220, 519
MalI	GATC	9 cut(s)	87, 114, 174, 275, 392, 543, 613, 648, 748
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	9 cut(s)	85, 112, 172, 273, 390, 541, 611, 646, 746
MboII	GAAGA	8 cut(s)	98, 207, 536, 754, 760, 880, 916, 928
MflI	RGATCY	4 cut(s)	112, 172, 273, 541
MhlI	GDGCHC	1 cut(s)	779
MluCI	AATT	8 cut(s)	333, 385, 454, 499, 642, 664, 709, 887
MmeI	TCCRAC	2 cut(s)	134, 457
MseI	TTAA	2 cut(s)	237, 503
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	417, 773
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	2 cut(s)	417, 773
NcoI	CCATGG	1 cut(s)	861
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	9 cut(s)	85, 112, 172, 273, 390, 541, 611, 646, 746
NlaIII	CATG	3 cut(s)	124, 424, 865
NlaIV	GGNNCC	2 cut(s)	174, 469
NmeAIII	GCCGAG	2 cut(s)	47, 97
NmuCI	GTSAC	3 cut(s)	43, 220, 519
PciSI	GCTCTTC	3 cut(s)	111, 220, 863
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	3 cut(s)	442, 560, 603
PkrI	GCNGC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	415, 771
PspGI	CCWGG	2 cut(s)	415, 771
PspN4I	GGNNCC	2 cut(s)	174, 469
PspPI	GGNCC	2 cut(s)	18, 467
PsuI	RGATCY	4 cut(s)	112, 172, 273, 541
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	6 cut(s)	26, 234, 587, 718, 883, 961
RsaNI	GTAC	6 cut(s)	25, 233, 586, 717, 882, 960
Rsr2I	CGGWCCG	1 cut(s)	18
RsrII	CGGWCCG	1 cut(s)	18
SapI	GCTCTTC	3 cut(s)	111, 220, 863
SaqAI	TTAA	2 cut(s)	237, 503
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	9 cut(s)	85, 112, 172, 273, 390, 541, 611, 646, 746
Sau96I	GGNCC	2 cut(s)	18, 467
ScrFI	CCNGG	2 cut(s)	417, 773
SduI	GDGCHC	1 cut(s)	779
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	3 cut(s)	286, 494, 951
SinI	GGWCC	2 cut(s)	18, 467
Sse9I	AATT	8 cut(s)	333, 385, 454, 499, 642, 664, 709, 887
SsiI	CCGC	2 cut(s)	89, 913
SspI	AATATT	2 cut(s)	400, 730
SspMI	CTAG	2 cut(s)	626, 842
StyD4I	CCNGG	2 cut(s)	415, 771
StyI	CCWWGG	2 cut(s)	861, 927
TaaI	ACNGT	2 cut(s)	290, 585
TaiI	ACGT	2 cut(s)	99, 945
TaqI	TCGA	3 cut(s)	93, 657, 973
TaqII	GACCGA	2 cut(s)	6, 840
TasI	AATT	8 cut(s)	333, 385, 454, 499, 642, 664, 709, 887
TatI	WGTACW	5 cut(s)	24, 232, 585, 716, 959
TfiI	GAWTC	3 cut(s)	442, 560, 603
Tru1I	TTAA	2 cut(s)	237, 503
Tru9I	TTAA	2 cut(s)	237, 503
TscAI	CASTG	3 cut(s)	583, 613, 679
TseFI	GTSAC	3 cut(s)	43, 220, 519
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	3 cut(s)	43, 220, 519
TspDTI	ATGAA	4 cut(s)	19, 437, 543, 754
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	3 cut(s)	583, 613, 679
VpaK11BI	GGWCC	2 cut(s)	18, 467
XapI	RAATTY	3 cut(s)	333, 499, 709
XspI	CTAG	2 cut(s)	626, 842
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.