Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

24080961 .. 24084844

Gene Structure 3884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCTGGACTCTCTTTCCATGAAGAAGAACAATTCCTGGAAGTCGTTTGGACTGTTTCGCGTTTGAAGCACCCAAACATTGTACCACTTGTTGGCTATTGTGTGGAGAATGGACAACATCTCCTTGTGTATGAATATATTGGAAATTTATCCCTTGATGAGGCACTTCACAGTGATGCATACAAGCCTCTGTCCTGGGGCCTCCGTCTCCAAATTGCTCTTGGTGTTGCTCAAGCTTTGGACTATCTGCACTCCACATTGTCGCCTTCAGTAGCTCATGGCAACTTGAAGAGCGAAAATATCTTACTTGATGAAGAACTTGCTCCTCATATCTGTGACTGCGGACTTGCTATTTTGAGGCCACTTACAAGCAATAGTCTTAAACTGAAGGCTTCAGAAAATGCTGTTGGTGACACTGGCTACATTGCACCTGAGCATGGCCTACCAGGGTTTGATAAGACAAAGAGTGACATCTATGCTTTCGGAGTGCTGCTTTTGGAGCTCTTAACAGGAAGGAGACCTTCTGATAGTTCAAGACCAAGGGAAGAGCAATCACTGGTGAAATGGGCTTCATTGCGGCTTCATGACACTGAGAGTCTGGATGAGATGATCGATCCAGGCATTAAAAAGACATGTTCCTCCAAGGCTCTCTCAAATTTTGCTGATATTATCTCCCTCTGTATACAGCCAGTGCAGGAATTCAGACCACCAATGTCTGAAGTTGTGGGATCTCTAACACAACTAATACAGAAGCTCAAGGGGAAAGGCAATGGAGCGGATGGTACACAAGTTGACCCCTTCGAGAGATCTTTTCGTTCAACCAACACCCGCTTCATGGGCTCACCTACATTGAGCTATTTTTCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

289

Amino Acids

31.85

Weight (kDa)

5.49

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	8 - 244	1.6e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	16 - 242	5.2e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	776
AccI	GTMKAC	1 cut(s)	682
AccII	CGCG	1 cut(s)	61
AciI	CCGC	4 cut(s)	342, 577, 776, 829
AclWI	GGATC	2 cut(s)	608, 736
AcsI	RAATTY	3 cut(s)	145, 655, 698
AcuI	CTGAAG	4 cut(s)	252, 378, 407, 738
AfaI	GTAC	2 cut(s)	84, 784
AfiI	CCNNNNNNNGG	4 cut(s)	92, 160, 437, 835
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	67, 289, 534, 819
AjnI	CCWGG	4 cut(s)	36, 194, 445, 616
AjuI	GAANNNNNNNTTGG	4 cut(s)	390, 422, 815, 847
AluBI	AGCT	5 cut(s)	236, 275, 502, 754, 855
AluI	AGCT	5 cut(s)	236, 275, 502, 754, 855
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	212, 511
AlwI	GGATC	2 cut(s)	608, 736
AoxI	GGCC	3 cut(s)	199, 359, 439
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	3 cut(s)	145, 655, 698
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	3 cut(s)	422, 571, 834
BaeI	ACNNNNGTAYC	2 cut(s)	774, 807
BanII	GRGCYC	2 cut(s)	504, 842
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	1 cut(s)	773
BciT130I	CCWGG	4 cut(s)	38, 196, 447, 618
BcoDI	GTCTC	2 cut(s)	212, 511
BglII	AGATCT	1 cut(s)	806
BisI	GCNGC	2 cut(s)	491, 578
BlsI	GCNGC	2 cut(s)	492, 579
Bme1390I	CCNGG	4 cut(s)	38, 196, 447, 618
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	4 cut(s)	38, 196, 447, 618
BmsI	GCATC	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	2 cut(s)	216, 740
Bsa29I	ATCGAT	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	4 cut(s)	195, 446, 539, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 160, 437, 835
Bse1I	ACTGG	3 cut(s)	421, 561, 689
Bse3DI	GCAATG	3 cut(s)	423, 572, 775
BseBI	CCWGG	4 cut(s)	38, 196, 447, 618
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	4 cut(s)	195, 446, 539, 642
BseGI	GGATG	2 cut(s)	607, 784
BseLI	CCNNNNNNNGG	4 cut(s)	92, 160, 437, 835
BseMI	GCAATG	3 cut(s)	423, 572, 775
BseMII	CTCAG	2 cut(s)	423, 582
BseNI	ACTGG	3 cut(s)	421, 561, 689
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	477
BsgI	GTGCAG	2 cut(s)	233, 713
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	201, 361, 441
BshVI	ATCGAT	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	504
BslI	CCNNNNNNNGG	4 cut(s)	92, 160, 437, 835
BsmAI	GTCTC	2 cut(s)	212, 511
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	201, 361, 441
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	504, 842
Bsp143I	GATC	4 cut(s)	609, 613, 728, 806
BspACI	CCGC	4 cut(s)	342, 577, 776, 829
BspANI	GGCC	3 cut(s)	201, 361, 441
BspCNI	CTCAG	2 cut(s)	424, 583
BspDI	ATCGAT	1 cut(s)	612
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	608, 736
BspQI	GCTCTTC	2 cut(s)	284, 540
BspTNI	GGTCTC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	776
BsrDI	GCAATG	3 cut(s)	423, 572, 775
BsrI	ACTGG	3 cut(s)	421, 561, 689
BssECI	CCNNGG	4 cut(s)	195, 446, 539, 642
BssMI	GATC	4 cut(s)	609, 613, 728, 806
BssNAI	GTATAC	1 cut(s)	683
BssT1I	CCWWGG	2 cut(s)	539, 642
Bst1107I	GTATAC	1 cut(s)	683
Bst2UI	CCWGG	4 cut(s)	38, 196, 447, 618
Bst4CI	ACNGT	2 cut(s)	55, 173
Bst6I	CTCTTC	2 cut(s)	284, 540
BstDEI	CTNAG	2 cut(s)	432, 591
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	607, 784
BstFNI	CGCG	1 cut(s)	61
BstKTI	GATC	4 cut(s)	612, 616, 731, 809
BstMAI	GTCTC	2 cut(s)	212, 511
BstMBI	GATC	4 cut(s)	609, 613, 728, 806
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 499, 837
BstNI	CCWGG	4 cut(s)	38, 196, 447, 618
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	4 cut(s)	36, 194, 445, 616
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	728, 806
BstYI	RGATCY	2 cut(s)	728, 806
BstZ17I	GTATAC	1 cut(s)	683
Bsu15I	ATCGAT	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	201, 361, 441
BsuTUI	ATCGAT	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	607, 784
BtsIMutI	CAGTG	5 cut(s)	178, 414, 554, 588, 696
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	612
Csp6I	GTAC	2 cut(s)	83, 783
CviAII	CATG	6 cut(s)	20, 278, 437, 584, 633, 835
CviQI	GTAC	2 cut(s)	83, 783
DdeI	CTNAG	2 cut(s)	432, 591
DpnI	GATC	4 cut(s)	611, 615, 730, 808
DpnII	GATC	4 cut(s)	609, 613, 728, 806
Eam1104I	CTCTTC	2 cut(s)	284, 540
EarI	CTCTTC	2 cut(s)	284, 540
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	2 cut(s)	539, 642
Eco24I	GRGCYC	2 cut(s)	504, 842
Eco31I	GGTCTC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	4 cut(s)	252, 378, 407, 738
EcoICRI	GAGCTC	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	698
EcoRII	CCWGG	4 cut(s)	36, 194, 445, 616
EcoT14I	CCWWGG	2 cut(s)	539, 642
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	2 cut(s)	504, 842
ErhI	CCWWGG	2 cut(s)	539, 642
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	6 cut(s)	23, 281, 440, 587, 636, 838
FalI	AAGNNNNNCTT	2 cut(s)	505, 537
FatI	CATG	6 cut(s)	19, 277, 436, 583, 632, 834
FauI	CCCGC	1 cut(s)	836
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	491, 578
FokI	GGATG	2 cut(s)	614, 791
FriOI	GRGCYC	2 cut(s)	504, 842
Fsp4HI	GCNGC	2 cut(s)	491, 578
GluI	GCNGC	2 cut(s)	491, 578
HaeIII	GGCC	3 cut(s)	201, 361, 441
Hin1II	CATG	6 cut(s)	23, 281, 440, 587, 636, 838
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	9, 595
HphI	GGTGA	3 cut(s)	422, 571, 834
Hpy166II	GTNNAC	3 cut(s)	683, 785, 793
Hpy188I	TCNGA	5 cut(s)	397, 485, 526, 704, 718
Hpy188III	TCNNGA	5 cut(s)	6, 534, 584, 599, 802
Hpy8I	GTNNAC	3 cut(s)	683, 785, 793
HpyAV	CCTTC	5 cut(s)	276, 382, 507, 531, 808
HpyCH4III	ACNGT	2 cut(s)	55, 173
HpyCH4V	TGCA	4 cut(s)	179, 250, 428, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 499, 837
HpyF3I	CTNAG	2 cut(s)	432, 591
Hsp92II	CATG	6 cut(s)	23, 281, 440, 587, 636, 838
Kzo9I	GATC	4 cut(s)	609, 613, 728, 806
LguI	GCTCTTC	2 cut(s)	284, 540
LmnI	GCTCC	3 cut(s)	328, 499, 773
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	1 cut(s)	166
MaeIII	GTNAC	3 cut(s)	335, 410, 467
MalI	GATC	4 cut(s)	611, 615, 730, 808
MbiI	CCGCTC	1 cut(s)	776
MboI	GATC	4 cut(s)	609, 613, 728, 806
MboII	GAAGA	5 cut(s)	35, 38, 301, 326, 557
MflI	RGATCY	2 cut(s)	728, 806
MhlI	GDGCHC	2 cut(s)	504, 842
MluCI	AATT	5 cut(s)	32, 145, 213, 655, 698
MlyI	GAGTC	2 cut(s)	3, 604
MnlI	CCTC	7 cut(s)	154, 198, 212, 336, 351, 649, 686
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	3 cut(s)	381, 506, 624
MslI	CAYNNNNRTG	2 cut(s)	174, 333
MspR9I	CCNGG	4 cut(s)	38, 196, 447, 618
MvaI	CCWGG	4 cut(s)	38, 196, 447, 618
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	67, 499, 837
NdeII	GATC	4 cut(s)	609, 613, 728, 806
NlaIII	CATG	6 cut(s)	23, 281, 440, 587, 636, 838
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	3 cut(s)	335, 410, 467
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	636
PagI	TCATGA	1 cut(s)	583
PciI	ACATGT	1 cut(s)	632
PciSI	GCTCTTC	2 cut(s)	284, 540
PflMI	CCANNNNNTGG	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	492, 579
PleI	GAGTC	2 cut(s)	3, 603
PpsI	GAGTC	2 cut(s)	3, 603
PscI	ACATGT	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	4 cut(s)	36, 194, 445, 616
PspGI	CCWGG	4 cut(s)	36, 194, 445, 616
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	199
PsuI	RGATCY	2 cut(s)	728, 806
RsaI	GTAC	2 cut(s)	84, 784
RsaNI	GTAC	2 cut(s)	83, 783
RseI	CAYNNNNRTG	2 cut(s)	174, 333
SacI	GAGCTC	1 cut(s)	504
SapI	GCTCTTC	2 cut(s)	284, 540
SaqAI	TTAA	3 cut(s)	381, 506, 624
SatI	GCNGC	2 cut(s)	491, 578
Sau3AI	GATC	4 cut(s)	609, 613, 728, 806
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	3, 604
ScrFI	CCNGG	4 cut(s)	38, 196, 447, 618
SduI	GDGCHC	2 cut(s)	504, 842
SetI	ASST	8 cut(s)	238, 277, 433, 504, 523, 756, 847, 857
SfaNI	GCATC	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	174, 333
SmlI	CTYRAG	2 cut(s)	231, 755
SmoI	CTYRAG	2 cut(s)	231, 755
Sse9I	AATT	5 cut(s)	32, 145, 213, 655, 698
SsiI	CCGC	4 cut(s)	342, 577, 776, 829
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	4 cut(s)	36, 194, 445, 616
StyI	CCWWGG	2 cut(s)	539, 642
TaaI	ACNGT	2 cut(s)	55, 173
TaqI	TCGA	2 cut(s)	612, 801
TasI	AATT	5 cut(s)	32, 145, 213, 655, 698
TauI	GCSGC	1 cut(s)	580
Tru1I	TTAA	3 cut(s)	381, 506, 624
Tru9I	TTAA	3 cut(s)	381, 506, 624
TscAI	CASTG	5 cut(s)	178, 421, 561, 595, 696
TseFI	GTSAC	3 cut(s)	335, 410, 467
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	3 cut(s)	335, 410, 467
TspDTI	ATGAA	6 cut(s)	36, 147, 327, 561, 572, 823
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	5 cut(s)	178, 421, 561, 595, 696
Van91I	CCANNNNNTGG	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	3 cut(s)	145, 655, 698
XceI	RCATGY	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	682
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.