Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014404.1

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

21884 .. 23782

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014404.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgctgtgtttggccacagatgcacattgccctgcccattttatatacttatgtaccaattttattgttttaatctgggcacctgcagtcacagctcttcaagagctttacaagtcccttaacacaccgccacagctgaccggttggagattggatggtggggatccttgtgatgaatcatggaatggggtgtcctgttttggctcctctgtgatgtaccttgagctttatggtctagacctctctgggtctattactgccgcgctgtataatctgaagaaaaaaaaattgaagcaactgaaaatccaagaaatctatggtgtcgtcccaaaccattttcagtccataccaaatttgtggatcgggggtaatggttgtgaagtatcggggaacaactgtccaccctgggatgttcctctggaaaccaaggcaagggactcagaacaaaacacctatctccctccagcaactcagtcaagcgttaagaactcaggacacaagaataagaagcttggaatattcgtcactataattggttgcatcgtggcggcagctgctgccatagcatgcatggcagcccaccaggatgcaaacaatgaaccaccacctgagcagcctgctcggcttcaattttctcccccgaggccacctgagaggctagaacttgatggcaggttcattgcaggacagaattacgaaataattgttgctggtaaagcctatcatgctgatacagaagaaaaagtagtgaagaaagcaaagaaagaccaagagccagaggaaccccctccacaagttaaacttgacactttcatcgaccatgttgaggaagatgaccgacagatattcaagcttattggattctgtcatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

291

Amino Acids

32.17

Weight (kDa)

5.64

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	2 cut(s)	91, 663
AccB1I	GGYRCC	1 cut(s)	79
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	128, 261, 548
AclWI	GGATC	3 cut(s)	158, 171, 368
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	55, 218
AfiI	CCNNNNNNNGG	2 cut(s)	432, 826
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	101, 292, 629, 850
AjnI	CCWGG	2 cut(s)	404, 582
AluBI	AGCT	7 cut(s)	95, 106, 136, 226, 511, 554, 853
AluI	AGCT	7 cut(s)	95, 106, 136, 226, 511, 554, 853
AlwI	GGATC	3 cut(s)	158, 171, 368
AlwNI	CAGNNNCTG	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	640
AoxI	GGCC	2 cut(s)	12, 644
ApeKI	GCWGC	5 cut(s)	551, 554, 557, 575, 613
ApoI	RAATTY	1 cut(s)	352
AsiGI	ACCGGT	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	640
BaeGI	GKGCMC	1 cut(s)	82
BaeI	ACNNNNGTAYC	2 cut(s)	37, 70
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	5 cut(s)	541, 544, 563, 587, 625
BccI	CCATC	2 cut(s)	149, 662
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciT130I	CCWGG	2 cut(s)	406, 584
BfaI	CTAG	2 cut(s)	236, 659
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	91, 663
BglI	GCCNNNNNGGC	1 cut(s)	622
BisI	GCNGC	7 cut(s)	261, 549, 552, 555, 558, 576, 614
BlsI	GCNGC	7 cut(s)	262, 550, 553, 556, 559, 577, 615
Bme1390I	CCNGG	2 cut(s)	406, 584
BmeT110I	CYCGRG	1 cut(s)	640
BmiI	GGNNCC	4 cut(s)	81, 165, 205, 783
BmrFI	CCNGG	2 cut(s)	406, 584
BmsI	GCATC	3 cut(s)	10, 549, 577
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	4 cut(s)	404, 405, 426, 641
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 826
Bse118I	RCCGGY	1 cut(s)	140
Bse3DI	GCAATG	2 cut(s)	25, 678
BseBI	CCWGG	2 cut(s)	406, 584
BseDI	CCNNGG	4 cut(s)	404, 405, 426, 641
BseGI	GGATG	3 cut(s)	160, 415, 592
BseLI	CCNNNNNNNGG	2 cut(s)	432, 826
BseMI	GCAATG	2 cut(s)	25, 678
BseMII	CTCAG	5 cut(s)	453, 485, 504, 600, 642
BseRI	GAGGAG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	5 cut(s)	541, 544, 563, 587, 625
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	14, 646
BshNI	GGYRCC	1 cut(s)	79
BshTI	ACCGGT	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	3 cut(s)	100, 311, 449
BslI	CCNNNNNNNGG	2 cut(s)	432, 826
BsmFI	GGGAC	3 cut(s)	100, 311, 449
BsnI	GGCC	2 cut(s)	14, 646
BsoBI	CYCGRG	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	163, 360
BspACI	CCGC	3 cut(s)	128, 261, 548
BspANI	GGCC	2 cut(s)	14, 646
BspCNI	CTCAG	5 cut(s)	452, 484, 503, 601, 643
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	81, 165, 205, 783
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	2 cut(s)	91, 663
BspPI	GGATC	3 cut(s)	158, 171, 368
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	25, 678
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	4 cut(s)	404, 405, 426, 641
BssMI	GATC	2 cut(s)	163, 360
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	406, 584
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	568, 618
BstDEI	CTNAG	5 cut(s)	439, 471, 490, 609, 651
BstF5I	GGATG	3 cut(s)	160, 415, 592
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	166, 363
BstMBI	GATC	2 cut(s)	163, 360
BstMWI	GCNNNNNNNGC	9 cut(s)	20, 92, 554, 557, 563, 572, 622, 716, 725
BstNI	CCWGG	2 cut(s)	406, 584
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	2 cut(s)	404, 582
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	5 cut(s)	541, 544, 563, 587, 625
BstX2I	RGATCY	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	14, 646
BtsCI	GGATG	3 cut(s)	160, 415, 592
BveI	ACCTGC	2 cut(s)	91, 663
Cac8I	GCNNGC	2 cut(s)	568, 618
CaiI	CAGNNNCTG	1 cut(s)	557
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	54, 217
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	5 cut(s)	180, 567, 571, 725, 821
CviQI	GTAC	2 cut(s)	54, 217
DdeI	CTNAG	5 cut(s)	439, 471, 490, 609, 651
DpnI	GATC	2 cut(s)	165, 362
DpnII	GATC	2 cut(s)	163, 360
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	640
EcoRII	CCWGG	2 cut(s)	404, 582
EcoT14I	CCWWGG	1 cut(s)	426
EcoT22I	ATGCAT	1 cut(s)	572
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	5 cut(s)	183, 570, 574, 728, 824
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	3 cut(s)	100, 311, 449
FatI	CATG	5 cut(s)	179, 566, 570, 724, 820
Fnu4HI	GCNGC	7 cut(s)	261, 549, 552, 555, 558, 576, 614
FokI	GGATG	3 cut(s)	167, 422, 599
Fsp4HI	GCNGC	7 cut(s)	261, 549, 552, 555, 558, 576, 614
FspBI	CTAG	2 cut(s)	236, 659
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	7 cut(s)	261, 549, 552, 555, 558, 576, 614
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	14, 646
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	5 cut(s)	183, 570, 574, 728, 824
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HindIII	AAGCTT	2 cut(s)	509, 851
HinfI	GANTC	3 cut(s)	176, 437, 861
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	276, 442
Hpy188III	TCNNGA	4 cut(s)	101, 236, 419, 492
Hpy8I	GTNNAC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	6 cut(s)	23, 86, 540, 570, 590, 683
HpyF10VI	GCNNNNNNNGC	9 cut(s)	20, 92, 554, 557, 563, 572, 622, 716, 725
HpyF3I	CTNAG	5 cut(s)	439, 471, 490, 609, 651
Hsp92II	CATG	5 cut(s)	183, 570, 574, 728, 824
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	163, 360
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	5 cut(s)	541, 544, 563, 587, 625
LweI	GCATC	3 cut(s)	10, 549, 577
MaeI	CTAG	2 cut(s)	236, 659
MaeIII	GTNAC	2 cut(s)	88, 523
MalI	GATC	2 cut(s)	165, 362
MboI	GATC	2 cut(s)	163, 360
MboII	GAAGA	5 cut(s)	89, 289, 749, 763, 842
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	7 cut(s)	58, 287, 352, 531, 629, 691, 702
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	217, 251, 426, 471, 636, 648, 772, 798, 820
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	4 cut(s)	71, 120, 483, 798
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	136, 554
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	406, 584
MvaI	CCWGG	2 cut(s)	406, 584
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	9 cut(s)	20, 92, 554, 557, 563, 572, 622, 716, 725
NdeII	GATC	2 cut(s)	163, 360
NlaIII	CATG	5 cut(s)	183, 570, 574, 728, 824
NlaIV	GGNNCC	4 cut(s)	81, 165, 205, 783
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	2 cut(s)	88, 523
NsiI	ATGCAT	1 cut(s)	572
NspI	RCATGY	1 cut(s)	570
PaeI	GCATGC	1 cut(s)	570
PaqCI	CACCTGC	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	176, 861
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	7 cut(s)	262, 550, 553, 556, 559, 577, 615
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	404, 582
PspGI	CCWGG	2 cut(s)	404, 582
PspN4I	GGNNCC	4 cut(s)	81, 165, 205, 783
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	2 cut(s)	136, 554
RsaI	GTAC	2 cut(s)	55, 218
RsaNI	GTAC	2 cut(s)	54, 217
RseI	CAYNNNNRTG	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	71, 120, 483, 798
SatI	GCNGC	7 cut(s)	261, 549, 552, 555, 558, 576, 614
Sau3AI	GATC	2 cut(s)	163, 360
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	2 cut(s)	406, 584
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	3 cut(s)	10, 549, 577
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	570
Sse9I	AATT	7 cut(s)	58, 287, 352, 531, 629, 691, 702
SsiI	CCGC	3 cut(s)	128, 261, 548
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	2 cut(s)	236, 659
StyD4I	CCNGG	2 cut(s)	404, 582
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	816
TaqII	GACCGA	1 cut(s)	852
TasI	AATT	7 cut(s)	58, 287, 352, 531, 629, 691, 702
TauI	GCSGC	2 cut(s)	263, 551
TfiI	GAWTC	2 cut(s)	176, 861
Tru1I	TTAA	4 cut(s)	71, 120, 483, 798
Tru9I	TTAA	4 cut(s)	71, 120, 483, 798
TseFI	GTSAC	2 cut(s)	88, 523
TseI	GCWGC	5 cut(s)	551, 554, 557, 575, 613
Tsp45I	GTSAC	2 cut(s)	88, 523
TspDTI	ATGAA	4 cut(s)	189, 612, 667, 802
XapI	RAATTY	1 cut(s)	352
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	570
XcmI	CCANNNNNNNNNTGG	2 cut(s)	314, 568
XspI	CTAG	2 cut(s)	236, 659
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.