Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

21399119 .. 21406308

Gene Structure 7190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG117300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCACCTCCAGTTTATCATAGCACAGTAAAGAAAACTAGGAGAAAAAGTTTCTCTGATAAATGCAGTTCCCTACTGAGAATCAAACTATATACTATGGCAGAGCTTCAGTCAGCTACTAACAGCTTTGCGGAAGAAAAGTTGCTGGGCCAAGGATCTCTTGCTTCTATTTACAAAGCCGAGTTTCCTGATGGCCAAATTTTGGCTGTAAAGAACATCAAGATGTCCGGACTCTCTTTCCATGAAGAAGAACAATTCCTGGACGTCATTTCCACTGTTTCTCAGTTGAAGCACCCGAACATTGTACCACTTGTTGGCTATTGTGTGGAGCATGGACAACATCTTCTTGTGTATGAATATGTTGAAAATTTATCCCTTGATGAGGCACTTCACAGTGATGCATACAAGCCTCTGTCCTGGGGCCTCCATCTCCAAATTGCTCTTGGTGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

16.87

Weight (kDa)

6.37

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	44 - 132	3.7e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	46 - 149	6.7e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AccB7I	CCANNNNNTGG	2 cut(s)	202, 314
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	198, 367
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	3 cut(s)	202, 314, 382
AgsI	TTSAA	2 cut(s)	289, 365
AjnI	CCWGG	2 cut(s)	258, 416
AluBI	AGCT	3 cut(s)	106, 116, 126
AluI	AGCT	3 cut(s)	106, 116, 126
AlwI	GGATC	1 cut(s)	163
Aor13HI	TCCGGA	1 cut(s)	227
AoxI	GGCC	3 cut(s)	148, 193, 421
ApoI	RAATTY	2 cut(s)	198, 367
AspS9I	GGNCC	2 cut(s)	148, 421
BalI	TGGCCA	1 cut(s)	195
BccI	CCATC	2 cut(s)	185, 435
BciT130I	CCWGG	2 cut(s)	260, 418
BfaI	CTAG	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	260, 418
BmgT120I	GGNCC	2 cut(s)	148, 421
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	2 cut(s)	260, 418
BmsI	GCATC	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	151, 417
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 314, 382
Bse1I	ACTGG	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	260, 418
BseDI	CCNNGG	2 cut(s)	151, 417
BseLI	CCNNNNNNNGG	3 cut(s)	202, 314, 382
BseMII	CTCAG	2 cut(s)	68, 296
BseNI	ACTGG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	145
BshFI	GGCC	3 cut(s)	150, 195, 423
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	202, 314, 382
BsnI	GGCC	3 cut(s)	150, 195, 423
Bsp13I	TCCGGA	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	3 cut(s)	150, 195, 423
BspCNI	CTCAG	2 cut(s)	69, 295
BspEI	TCCGGA	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	151, 417
BssMI	GATC	1 cut(s)	155
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	260, 418
Bst4CI	ACNGT	3 cut(s)	28, 277, 395
BstACI	GRCGYC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	77, 282
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstKTI	GATC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	155
BstNI	CCWGG	2 cut(s)	260, 418
BstSCI	CCNGG	2 cut(s)	258, 416
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	150, 195, 423
BtsIMutI	CAGTG	2 cut(s)	273, 400
Cfr13I	GGNCC	2 cut(s)	148, 421
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	2 cut(s)	242, 332
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	77, 282
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	258, 416
EcoT14I	CCWWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	245, 335
FaiI	YATR	9 cut(s)	21, 91, 93, 98, 243, 333, 354, 360, 403
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	2 cut(s)	241, 331
FspBI	CTAG	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	150, 195, 423
HapII	CCGG	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	245, 335
HinfI	GANTC	2 cut(s)	81, 231
HpaII	CCGG	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	3 cut(s)	188, 220, 228
HpyCH4III	ACNGT	3 cut(s)	28, 277, 395
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	66, 401
HpyF3I	CTNAG	2 cut(s)	77, 282
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	245, 335
Kpn2I	TCCGGA	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	24, 131, 201, 241, 245, 272, 403, 430
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	264
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	4 cut(s)	146, 257, 260, 335
MflI	RGATCY	1 cut(s)	155
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	4 cut(s)	198, 254, 367, 435
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	18, 376, 420, 434
Mox20I	TGGCCA	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	403
MroI	TCCGGA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	1 cut(s)	454
MslI	CAYNNNNRTG	2 cut(s)	221, 396
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	260, 418
MvaI	CCWGG	2 cut(s)	260, 418
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	245, 335
NlaIV	GGNNCC	1 cut(s)	422
NmeAIII	GCCGAG	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	81
PflMI	CCANNNNNTGG	2 cut(s)	202, 314
PfoI	TCCNGGA	1 cut(s)	258
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	258, 416
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	258, 416
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	2 cut(s)	148, 421
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	2 cut(s)	221, 396
SaqAI	TTAA	1 cut(s)	454
Sau3AI	GATC	1 cut(s)	155
Sau96I	GGNCC	2 cut(s)	148, 421
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	260, 418
SetI	ASST	5 cut(s)	10, 108, 118, 128, 267
SfaNI	GCATC	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	221, 396
Sse9I	AATT	4 cut(s)	198, 254, 367, 435
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	258, 416
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	28, 277, 395
TaiI	ACGT	1 cut(s)	267
TasI	AATT	4 cut(s)	198, 254, 367, 435
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	2 cut(s)	280, 400
TspDTI	ATGAA	2 cut(s)	258, 369
TspRI	CASTG	2 cut(s)	280, 400
Van91I	CCANNNNNTGG	2 cut(s)	202, 314
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	2 cut(s)	198, 367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XspI	CTAG	1 cut(s)	39
ZraI	GACGTC	1 cut(s)	265
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.