Rroxscaffold_2G00090920

Protein STRUBBELIG-RECEPTOR FAMILY 2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
12605898 .. 12608583
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090920.1

Sequence Viewer

Length: 978 bp
ATGGCGACGCAGTACGTGGTTTTCACAGTGCTTGTCATGGCGGTGGTTATGGCTTCTCAGGCTGAGGCTTCTACTGATCCACTTGACGTCACAGCTCTCCAAGAGCTTTACAAGTCCCTTAACACACCGCCACAGCTGACCGGTTGGACATTGGATGGTGGGGATCCTTGCGATGAATCATGGAATGGAGTGTCCTGTTTTGGCTCTTCTGTGATCGAGCTTTATGGCCTAGACCTCTCTGGGTCTATTACTGCCGCGCTGTATAATCTGAAAAAATTGAAGCAACTGGATATTAGTTCCAATAGCATTGGTGGTGAACTTCCATATGTGTTACCCCCTCATGCAACTCATATAAATATGGCACGCAACAAATTCACTGGAAATGTCCCCCAGAGTTTATCTGACATGAAATATCTTGTGAATCTAAGCCGCAATTTGTTATCAGGACCCATTGGCAATGTTTTTAATGGCCTACAAAGTCTGAAGCAATTGGATTTGTCTTATAATAATTTTACTGGAGATGTGTGCAGCTCATTTGGATCTCTTACTAATCTCACTGGATTGTACTTGCAGAATAACCAATTCGCTGCATCAGTTGTTTATCCAGTAATGGATATGAAAATCCAAGAAAACTATGGTGTTGTCCCAAACCATTTTCAGTCCATACCAAATTTGTGGATCGGGGGTAATAGTTGTGAAGTATCCGGGAACAACTGTCCACCCTGGGATGTTCCTCTGGAAACCAAGGCAAGGGTCTCAGAACAAAACACCTATCTCCCTCCAGCAACTCAGTCAAGCGTTAAGAACTCAGGACACAAGAATAAGAAGCTTAAAATATTCGTCACTATAATTGGTTGCATCGTGGCGGCAGCTGCAGCCATAGCATGCATGGCAGCCCGCCAGGACGCAAACAATGAACCACCACCTGAGCAGCCCGCTCGGCTTCAATTTTCTCCCCGAGGCCACCTGAGAGGCTAG

Protein Analysis

325

Amino Acids

35.12

Weight (kDa)

5.95

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 66 5.6e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 140 - 195 2.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000664)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AatII GACGTC 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 938
AccII CGCG 1 cut(s) 257
AciI CCGC 7 cut(s) 41, 128, 255, 430, 866, 898, 936
AclWI GGATC 5 cut(s) 71, 158, 171, 547, 686
AcsI RAATTY 2 cut(s) 371, 670
AcuI CTGAAG 1 cut(s) 503
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 14, 566
AfiI CCNNNNNNNGG 1 cut(s) 750
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 2 cut(s) 280, 947
AjnI CCWGG 2 cut(s) 722, 900
AluBI AGCT 7 cut(s) 95, 106, 136, 220, 531, 829, 872
AluI AGCT 7 cut(s) 95, 106, 136, 220, 531, 829, 872
Alw26I GTCTC 1 cut(s) 760
AlwI GGATC 5 cut(s) 71, 158, 171, 547, 686
Ama87I CYCGRG 1 cut(s) 957
AoxI GGCC 3 cut(s) 226, 469, 961
ApeKI GCWGC 7 cut(s) 528, 587, 869, 872, 875, 893, 931
ApoI RAATTY 2 cut(s) 371, 670
AsiGI ACCGGT 1 cut(s) 140
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 706
AsuHPI GGTGA 1 cut(s) 326
AvaI CYCGRG 1 cut(s) 957
AvaII GGWCC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 163
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 7 cut(s) 540, 574, 859, 881, 887, 905, 943
BccI CCATC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 920, 954
BciT130I CCWGG 2 cut(s) 724, 902
BciVI GTATCC 1 cut(s) 712
BcnI CCSGG 1 cut(s) 706
BcoDI GTCTC 1 cut(s) 760
BfaI CTAG 2 cut(s) 230, 976
BfmI CTRYAG 1 cut(s) 873
BfuI GTATCC 1 cut(s) 712
BglI GCCNNNNNGGC 1 cut(s) 940
Bme1390I CCNGG 3 cut(s) 706, 724, 902
Bme18I GGWCC 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 957
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 165, 448
BmrFI CCNGG 3 cut(s) 706, 724, 902
BmsI GCATC 2 cut(s) 599, 867
BpmI CTGGAG 2 cut(s) 537, 765
Bpu10I CCTNAGC 2 cut(s) 63, 927
BpuMI CCSGG 1 cut(s) 706
BsaAI YACGTR 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 4 cut(s) 722, 723, 744, 958
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 750
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 5 cut(s) 291, 382, 520, 562, 605
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 2 cut(s) 724, 902
BseDI CCNNGG 4 cut(s) 722, 723, 744, 958
BseGI GGATG 2 cut(s) 160, 733
BseLI CCNNNNNNNGG 1 cut(s) 750
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 7 cut(s) 54, 71, 771, 803, 822, 918, 959
BseNI ACTGG 5 cut(s) 291, 382, 520, 562, 605
BseXI GCAGC 7 cut(s) 540, 574, 859, 881, 887, 905, 943
BsgI GTGCAG 1 cut(s) 547
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 3 cut(s) 228, 471, 963
BshTI ACCGGT 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 957
BsiSI CCGG 2 cut(s) 141, 705
BslFI GGGAC 3 cut(s) 100, 371, 629
BslI CCNNNNNNNGG 1 cut(s) 750
BsmAI GTCTC 1 cut(s) 760
BsmFI GGGAC 3 cut(s) 100, 371, 629
BsnI GGCC 3 cut(s) 228, 471, 963
Bso31I GGTCTC 1 cut(s) 760
BsoBI CYCGRG 1 cut(s) 957
Bsp143I GATC 5 cut(s) 76, 163, 213, 539, 678
BspACI CCGC 7 cut(s) 41, 128, 255, 430, 866, 898, 936
BspANI GGCC 3 cut(s) 228, 471, 963
BspCNI CTCAG 7 cut(s) 55, 70, 770, 802, 821, 919, 960
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 2 cut(s) 165, 448
BspMAI CTGCAG 1 cut(s) 877
BspPI GGATC 5 cut(s) 71, 158, 171, 547, 686
BspQI GCTCTTC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 760
BsrBI CCGCTC 1 cut(s) 938
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 5 cut(s) 291, 382, 520, 562, 605
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 4 cut(s) 722, 723, 744, 958
BssMI GATC 5 cut(s) 76, 163, 213, 539, 678
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 744
Bst2UI CCWGG 2 cut(s) 724, 902
Bst4CI ACNGT 2 cut(s) 28, 716
Bst6I CTCTTC 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 4 cut(s) 364, 886, 898, 936
BstDEI CTNAG 8 cut(s) 57, 63, 425, 757, 789, 808, 927, 968
BstF5I GGATG 2 cut(s) 160, 733
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 5 cut(s) 79, 166, 216, 542, 681
BstMAI GTCTC 1 cut(s) 760
BstMBI GATC 5 cut(s) 76, 163, 213, 539, 678
BstMWI GCNNNNNNNGC 6 cut(s) 59, 872, 875, 881, 890, 940
BstNI CCWGG 2 cut(s) 724, 902
BstNSI RCATGY 1 cut(s) 888
BstSCI CCNGG 3 cut(s) 704, 722, 900
BstSFI CTRYAG 1 cut(s) 873
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 7 cut(s) 540, 574, 859, 881, 887, 905, 943
BstX2I RGATCY 2 cut(s) 163, 539
BstXI CCANNNNNNTGG 1 cut(s) 675
BstYI RGATCY 2 cut(s) 163, 539
BsuI GTATCC 1 cut(s) 712
BsuRI GGCC 3 cut(s) 228, 471, 963
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 160, 733
BtsIMutI CAGTG 3 cut(s) 33, 375, 555
Cac8I GCNNGC 4 cut(s) 364, 886, 898, 936
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 446
CseI GACGC 2 cut(s) 16, 914
Csp6I GTAC 2 cut(s) 13, 565
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 6 cut(s) 37, 180, 341, 406, 885, 889
CviQI GTAC 2 cut(s) 13, 565
DdeI CTNAG 8 cut(s) 57, 63, 425, 757, 789, 808, 927, 968
DpnI GATC 5 cut(s) 78, 165, 215, 541, 680
DpnII GATC 5 cut(s) 76, 163, 213, 539, 678
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 957
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 722, 900
EcoT14I CCWWGG 1 cut(s) 744
EcoT22I ATGCAT 1 cut(s) 890
ErhI CCWWGG 1 cut(s) 744
FaeI CATG 6 cut(s) 40, 183, 344, 409, 888, 892
FaqI GGGAC 3 cut(s) 100, 371, 629
FatI CATG 6 cut(s) 36, 179, 340, 405, 884, 888
FauI CCCGC 2 cut(s) 905, 943
FauNDI CATATG 1 cut(s) 325
FokI GGATG 2 cut(s) 167, 740
FspBI CTAG 2 cut(s) 230, 976
GlaI GCGC 1 cut(s) 258
GsuI CTGGAG 2 cut(s) 537, 765
HaeIII GGCC 3 cut(s) 228, 471, 963
HapII CCGG 2 cut(s) 141, 705
HgaI GACGC 2 cut(s) 16, 914
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 6 cut(s) 40, 183, 344, 409, 888, 892
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 2 cut(s) 176, 421
HpaII CCGG 2 cut(s) 141, 705
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 317, 719
Hpy188I TCNGA 4 cut(s) 270, 403, 483, 760
Hpy188III TCNNGA 3 cut(s) 444, 737, 810
Hpy8I GTNNAC 2 cut(s) 317, 719
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 28, 716
HpyCH4IV ACGT 2 cut(s) 15, 87
HpyCH4V TGCA 7 cut(s) 344, 528, 571, 590, 858, 875, 888
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 872, 875, 881, 890, 940
HpyF3I CTNAG 8 cut(s) 57, 63, 425, 757, 789, 808, 927, 968
HpySE526I ACGT 2 cut(s) 15, 87
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 6 cut(s) 40, 183, 344, 409, 888, 892
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 5 cut(s) 76, 163, 213, 539, 678
LguI GCTCTTC 1 cut(s) 211
Lsp1109I GCAGC 7 cut(s) 540, 574, 859, 881, 887, 905, 943
LweI GCATC 2 cut(s) 599, 867
MaeI CTAG 2 cut(s) 230, 976
MaeII ACGT 2 cut(s) 15, 87
MaeIII GTNAC 3 cut(s) 88, 330, 841
MalI GATC 5 cut(s) 78, 165, 215, 541, 680
MbiI CCGCTC 1 cut(s) 938
MboI GATC 5 cut(s) 76, 163, 213, 539, 678
MboII GAAGA 1 cut(s) 198
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 2 cut(s) 163, 539
MluCI AATT 9 cut(s) 275, 371, 433, 488, 508, 581, 670, 849, 947
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 7 cut(s) 58, 245, 348, 744, 789, 953, 965
Mph1103I ATGCAT 1 cut(s) 890
MseI TTAA 4 cut(s) 120, 465, 801, 831
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 2 cut(s) 136, 872
MspI CCGG 2 cut(s) 141, 705
MspR9I CCNGG 3 cut(s) 706, 724, 902
MunI CAATTG 1 cut(s) 488
MvaI CCWGG 2 cut(s) 724, 902
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 6 cut(s) 59, 872, 875, 881, 890, 940
NciI CCSGG 1 cut(s) 706
NdeI CATATG 1 cut(s) 325
NdeII GATC 5 cut(s) 76, 163, 213, 539, 678
NlaIII CATG 6 cut(s) 40, 183, 344, 409, 888, 892
NlaIV GGNNCC 2 cut(s) 165, 448
NmeAIII GCCGAG 1 cut(s) 919
NmuCI GTSAC 2 cut(s) 88, 841
NsiI ATGCAT 1 cut(s) 890
NspI RCATGY 1 cut(s) 888
PaeI GCATGC 1 cut(s) 888
PasI CCCWGGG 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 176, 421
PfoI TCCNGGA 1 cut(s) 704
PinAI ACCGGT 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 446
PsiI TTATAA 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 722, 900
PspGI CCWGG 2 cut(s) 722, 900
PspN4I GGNNCC 2 cut(s) 165, 448
PspPI GGNCC 1 cut(s) 446
PspPPI RGGWCCY 1 cut(s) 446
PstI CTGCAG 1 cut(s) 877
PsuI RGATCY 2 cut(s) 163, 539
PvuII CAGCTG 2 cut(s) 136, 872
RsaI GTAC 2 cut(s) 14, 566
RsaNI GTAC 2 cut(s) 13, 565
RseI CAYNNNNRTG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 4 cut(s) 120, 465, 801, 831
Sau3AI GATC 5 cut(s) 76, 163, 213, 539, 678
Sau96I GGNCC 1 cut(s) 446
ScrFI CCNGG 3 cut(s) 706, 724, 902
SfaNI GCATC 2 cut(s) 599, 867
SfcI CTRYAG 1 cut(s) 873
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 41
SphI GCATGC 1 cut(s) 888
Sse9I AATT 9 cut(s) 275, 371, 433, 488, 508, 581, 670, 849, 947
SsiI CCGC 7 cut(s) 41, 128, 255, 430, 866, 898, 936
SspI AATATT 1 cut(s) 837
SspMI CTAG 2 cut(s) 230, 976
StyD4I CCNGG 3 cut(s) 704, 722, 900
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 2 cut(s) 28, 716
TaiI ACGT 2 cut(s) 18, 90
TaqI TCGA 1 cut(s) 216
TasI AATT 9 cut(s) 275, 371, 433, 488, 508, 581, 670, 849, 947
TatI WGTACW 1 cut(s) 564
TauI GCSGC 3 cut(s) 257, 432, 869
TfiI GAWTC 2 cut(s) 176, 421
Tru1I TTAA 4 cut(s) 120, 465, 801, 831
Tru9I TTAA 4 cut(s) 120, 465, 801, 831
TscAI CASTG 3 cut(s) 33, 382, 562
TseFI GTSAC 2 cut(s) 88, 841
TseI GCWGC 7 cut(s) 528, 587, 869, 872, 875, 893, 931
Tsp45I GTSAC 2 cut(s) 88, 841
TspDTI ATGAA 4 cut(s) 189, 422, 632, 930
TspRI CASTG 3 cut(s) 33, 382, 562
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 2 cut(s) 371, 670
XceI RCATGY 1 cut(s) 888
XcmI CCANNNNNNNNNTGG 2 cut(s) 632, 886
XspI CTAG 2 cut(s) 230, 976
ZraI GACGTC 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.