Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

15898737 .. 15909344

Gene Structure 10608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG171500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCGACCAAGTATCAGTACTTGTTTTTGACGGTGCTTTTCATGGCGGTTGTTATGGCTTCTCTGACTGAGGCTTTTACTGATCCACTCGACGCCACAGCTCTTCAAGAGCTTTACAAATCCCTTAACAGTCCACCACAGCTGACGGGTTGGAGATTGGGTGGTGGCGATCCTTGTGATGAATCGTGGACTGGAGTGTCATGTTCTGGGTCTCATGTTACAGAGATTGAGCTTCATGGTCTAAACCTTTCTGGGTTTATTTCTGCTGGGCTCCATAATCTCTACTACCTGAAGCGAATTGACATGGCATGCAATTCCCTTACCAATAGTATTCCGCAATGTTTAGGTGGCATGAAACATCTTCAATACTTAAATCTGAGCCACAATACGTTATCTGGAGCCTTAGGCAACATTTTTACTGGCCTCAAGAATTTAAGACAACTGGATTTGTCCTATAATAACTTTACCGCTCTGCCAAGTTCGTTTGGATCCCTCACAAATCTCAATGGATTGTACTTGCACGATAACCGTTTGACTGGATCACTTACTTCTCGGTCCAGTGCTGACAAGAAATGGCTTGTCGTTGTCTGGATAAGCTTTGTAGTCGTTGCAGCTGTGTTTGCTTGTTGTATGGCATCATACCATTGTACTGCTCAACCAGGTCAACACCGCATTGGTGCTGCTGCTCAACCTGATCAGAACGACAGCATTCCCGCCGTTGCTCAACCAGGGCAGCAAGCTGCCATTGCTGCTGCTGCTCAACCAGGCCAACAACCTGCCGTTGCTACTGTTGCTCAGCCAGGCCAACAAGCCCCCATTGCTGGTTCTGCTCAATCCCCCTTCATTGTTTCCCCTGATCCTGATGTCTTACCTGCCACTTACATCTCCTCAAAGAAGAAACGGAAAATATCCTTTGGAACATTTGAAGGTGGTACGTGGCAGATTTCCGATGGAATTAGATATCATACTGCAGATTCTTGTGAGAAAGTGATAAAACTGGCATCTCCTGCTCCGAGGGTTGAGCAGCCAAGGAGAAAGATGAGTTTCATAAACCAAGACAATGAAGTACAAGAGTATGCAATGGTAGATGATGATGATGATGAAGAATGTAAGAAAAAGACACTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

376

Amino Acids

40.69

Weight (kDa)

6.13

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 69	3.3e-09	Leucine rich repeat N-terminal domain
LRR_8	PF13855	72 - 131	2e-07	Leucine rich repeat
LRR_14	PF23598	93 - 178	3.9e-08	Leucine-rich repeat region
LRR_8	PF13855	138 - 178	4e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
Acc36I	ACCTGC	2 cut(s)	784, 880
AccBSI	CCGCTC	1 cut(s)	470
AciI	CCGC	5 cut(s)	47, 335, 468, 670, 714
AclWI	GGATC	6 cut(s)	77, 164, 483, 496, 547, 851
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	5 cut(s)	20, 515, 649, 934, 1068
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	3 cut(s)	107, 365, 926
AjnI	CCWGG	4 cut(s)	658, 727, 763, 799
AluBI	AGCT	7 cut(s)	101, 112, 142, 232, 597, 614, 740
AluI	AGCT	7 cut(s)	101, 112, 142, 232, 597, 614, 740
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	6 cut(s)	77, 164, 483, 496, 547, 851
AoxI	GGCC	3 cut(s)	421, 766, 802
ApeKI	GCWGC	9 cut(s)	611, 680, 683, 733, 740, 749, 752, 755, 1024
ApoI	RAATTY	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	555
AxyI	CCTNAGG	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	273
BbvI	GCAGC	9 cut(s)	623, 667, 670, 727, 736, 739, 742, 745, 1036
BccI	CCATC	1 cut(s)	944
BceAI	ACGGC	2 cut(s)	701, 764
BciT130I	CCWGG	4 cut(s)	660, 729, 765, 801
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	969
BfuAI	ACCTGC	2 cut(s)	784, 880
BisI	GCNGC	9 cut(s)	612, 681, 684, 734, 741, 750, 753, 756, 1025
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	9 cut(s)	613, 682, 685, 735, 742, 751, 754, 757, 1026
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	4 cut(s)	660, 729, 765, 801
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	3 cut(s)	272, 400, 490
BmrFI	CCNGG	4 cut(s)	660, 729, 765, 801
BmsI	GCATC	2 cut(s)	644, 1010
BpmI	CTGGAG	3 cut(s)	213, 417, 1109
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	728, 1013, 1028
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	7 cut(s)	196, 424, 447, 541, 558, 1002, 1126
Bse21I	CCTNAGG	1 cut(s)	403
Bse3DI	GCAATG	4 cut(s)	344, 744, 816, 1086
BseBI	CCWGG	4 cut(s)	660, 729, 765, 801
BseDI	CCNNGG	3 cut(s)	728, 1013, 1028
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMI	GCAATG	4 cut(s)	344, 744, 816, 1086
BseMII	CTCAG	3 cut(s)	60, 368, 809
BseNI	ACTGG	7 cut(s)	196, 424, 447, 541, 558, 1002, 1126
BseRI	GAGGAG	1 cut(s)	877
BseXI	GCAGC	9 cut(s)	623, 667, 670, 727, 736, 739, 742, 745, 1036
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	3 cut(s)	423, 768, 804
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	3 cut(s)	423, 768, 804
Bso31I	GGTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	6 cut(s)	82, 169, 488, 539, 694, 856
Bsp1720I	GCTNAGC	1 cut(s)	795
BspACI	CCGC	5 cut(s)	47, 335, 468, 670, 714
BspANI	GGCC	3 cut(s)	423, 768, 804
BspCNI	CTCAG	3 cut(s)	61, 369, 808
BspLI	GGNNCC	3 cut(s)	272, 400, 490
BspMAI	CTGCAG	1 cut(s)	973
BspMI	ACCTGC	2 cut(s)	784, 880
BspPI	GGATC	6 cut(s)	77, 164, 483, 496, 547, 851
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	470
BsrDI	GCAATG	4 cut(s)	344, 744, 816, 1086
BsrI	ACTGG	7 cut(s)	196, 424, 447, 541, 558, 1002, 1126
BssECI	CCNNGG	3 cut(s)	728, 1013, 1028
BssMI	GATC	6 cut(s)	82, 169, 488, 539, 694, 856
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	1028
Bst2UI	CCWGG	4 cut(s)	660, 729, 765, 801
Bst4CI	ACNGT	4 cut(s)	34, 131, 530, 790
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstBAI	YACGTR	1 cut(s)	936
BstC8I	GCNNGC	2 cut(s)	310, 738
BstDEI	CTNAG	4 cut(s)	69, 377, 403, 795
BstKTI	GATC	6 cut(s)	85, 172, 491, 542, 697, 859
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	6 cut(s)	82, 169, 488, 539, 694, 856
BstMWI	GCNNNNNNNGC	8 cut(s)	620, 746, 749, 755, 791, 818, 827, 1007
BstNI	CCWGG	4 cut(s)	660, 729, 765, 801
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	4 cut(s)	658, 727, 763, 799
BstSFI	CTRYAG	1 cut(s)	969
BstV1I	GCAGC	9 cut(s)	623, 667, 670, 727, 736, 739, 742, 745, 1036
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
Bsu36I	CCTNAGG	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	423, 768, 804
BtsIMutI	CAGTG	1 cut(s)	565
BveI	ACCTGC	2 cut(s)	784, 880
Cac8I	GCNNGC	2 cut(s)	310, 738
Cfr13I	GGNCC	1 cut(s)	555
CseI	GACGC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	5 cut(s)	19, 514, 648, 933, 1067
CviAII	CATG	7 cut(s)	43, 201, 215, 236, 304, 309, 352
CviQI	GTAC	5 cut(s)	19, 514, 648, 933, 1067
DdeI	CTNAG	4 cut(s)	69, 377, 403, 795
DpnI	GATC	6 cut(s)	84, 171, 490, 541, 696, 858
DpnII	GATC	6 cut(s)	82, 169, 488, 539, 694, 856
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	1028
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	962
Eco47I	GGWCC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	403
EcoRII	CCWGG	4 cut(s)	658, 727, 763, 799
EcoRV	GATATC	1 cut(s)	962
EcoT14I	CCWWGG	1 cut(s)	1028
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	1028
FaeI	CATG	7 cut(s)	46, 204, 218, 239, 307, 312, 355
FatI	CATG	7 cut(s)	42, 200, 214, 235, 303, 308, 351
FauI	CCCGC	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	9 cut(s)	612, 681, 684, 734, 741, 750, 753, 756, 1025
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	9 cut(s)	612, 681, 684, 734, 741, 750, 753, 756, 1025
GluI	GCNGC	9 cut(s)	612, 681, 684, 734, 741, 750, 753, 756, 1025
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	3 cut(s)	213, 417, 1109
HaeIII	GGCC	3 cut(s)	423, 768, 804
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	7 cut(s)	46, 204, 218, 239, 307, 312, 355
HincII	GTYRAC	1 cut(s)	665
HindII	GTYRAC	1 cut(s)	665
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	2 cut(s)	182, 974
Hpy166II	GTNNAC	3 cut(s)	134, 189, 665
Hpy188I	TCNGA	5 cut(s)	66, 378, 699, 949, 1014
Hpy188III	TCNNGA	5 cut(s)	107, 396, 427, 589, 860
Hpy8I	GTNNAC	3 cut(s)	134, 189, 665
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	850, 920
HpyCH4III	ACNGT	4 cut(s)	34, 131, 530, 790
HpyCH4IV	ACGT	2 cut(s)	389, 935
HpyCH4V	TGCA	5 cut(s)	312, 520, 611, 971, 1079
HpyF10VI	GCNNNNNNNGC	8 cut(s)	620, 746, 749, 755, 791, 818, 827, 1007
HpyF3I	CTNAG	4 cut(s)	69, 377, 403, 795
HpySE526I	ACGT	2 cut(s)	389, 935
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	7 cut(s)	46, 204, 218, 239, 307, 312, 355
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	6 cut(s)	82, 169, 488, 539, 694, 856
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	276, 398, 1015
Lsp1109I	GCAGC	9 cut(s)	623, 667, 670, 727, 736, 739, 742, 745, 1036
LweI	GCATC	2 cut(s)	644, 1010
MabI	ACCWGGT	1 cut(s)	658
MaeII	ACGT	2 cut(s)	389, 935
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	6 cut(s)	84, 171, 490, 541, 696, 858
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	6 cut(s)	82, 169, 488, 539, 694, 856
MboII	GAAGA	4 cut(s)	95, 353, 907, 1115
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	4 cut(s)	297, 313, 430, 954
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	64, 434, 503, 898, 1008
MseI	TTAA	3 cut(s)	126, 371, 434
MspA1I	CMGCKG	2 cut(s)	142, 614
MspR9I	CCNGG	4 cut(s)	660, 729, 765, 801
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	4 cut(s)	660, 729, 765, 801
MwoI	GCNNNNNNNGC	8 cut(s)	620, 746, 749, 755, 791, 818, 827, 1007
NdeII	GATC	6 cut(s)	82, 169, 488, 539, 694, 856
NlaIII	CATG	7 cut(s)	46, 204, 218, 239, 307, 312, 355
NlaIV	GGNNCC	3 cut(s)	272, 400, 490
NspI	RCATGY	1 cut(s)	312
PaeI	GCATGC	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	182, 974
PkrI	GCNGC	9 cut(s)	613, 682, 685, 735, 742, 751, 754, 757, 1026
Ppu21I	YACGTR	1 cut(s)	936
Psp6I	CCWGG	4 cut(s)	658, 727, 763, 799
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	4 cut(s)	658, 727, 763, 799
PspN4I	GGNNCC	3 cut(s)	272, 400, 490
PspPI	GGNCC	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	973
PsuI	RGATCY	1 cut(s)	488
PvuII	CAGCTG	2 cut(s)	142, 614
RsaI	GTAC	5 cut(s)	20, 515, 649, 934, 1068
RsaNI	GTAC	5 cut(s)	19, 514, 648, 933, 1067
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	126, 371, 434
SatI	GCNGC	9 cut(s)	612, 681, 684, 734, 741, 750, 753, 756, 1025
Sau3AI	GATC	6 cut(s)	82, 169, 488, 539, 694, 856
Sau96I	GGNCC	1 cut(s)	555
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	4 cut(s)	660, 729, 765, 801
SduI	GDGCHC	1 cut(s)	273
SexAI	ACCWGGT	1 cut(s)	658
SfaNI	GCATC	2 cut(s)	644, 1010
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	312
Sse9I	AATT	4 cut(s)	297, 313, 430, 954
SsiI	CCGC	5 cut(s)	47, 335, 468, 670, 714
StyD4I	CCNGG	4 cut(s)	658, 727, 763, 799
StyI	CCWWGG	1 cut(s)	1028
TaaI	ACNGT	4 cut(s)	34, 131, 530, 790
TaiI	ACGT	2 cut(s)	392, 938
TaqI	TCGA	1 cut(s)	90
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	4 cut(s)	297, 313, 430, 954
TatI	WGTACW	4 cut(s)	18, 513, 647, 1066
TfiI	GAWTC	2 cut(s)	182, 974
Tru1I	TTAA	3 cut(s)	126, 371, 434
Tru9I	TTAA	3 cut(s)	126, 371, 434
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	9 cut(s)	611, 680, 683, 733, 740, 749, 752, 755, 1024
TspDTI	ATGAA	8 cut(s)	31, 195, 224, 368, 832, 1036, 1077, 1116
TspGWI	ACGGA	1 cut(s)	916
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	312
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.