Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

22095915 .. 22097848

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 284 bp

ATGGGCCAGTGCGTGTACGTGATTTTCGTCGCGGCTGTTCTGGTGGCGTCCTCAGCCGAGATTTTTACTGATCCGATTGACCTCGTAGCTCTTCAAGATCTTTACAAGACCCTCAACCAACCGCCACAGCTGACGGGTTGGAGATTGGATGGTGGGGATCCTTGCTTAGAATGGCGTGGTGTCTCCTGCATTTACAATGGAGTTGTATACCTGTACCTTAGAGGTCTGAATCTGACTGGGTACATCAGTCCCAAGATCAGATATCTTTACAATTTGCAGCTATT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

94

Amino Acids

10.56

Weight (kDa)

4.98

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 63	8e-08	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	32
AciI	CCGC	2 cut(s)	32, 122
AclWI	GGATC	3 cut(s)	65, 152, 165
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	3 cut(s)	17, 215, 242
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	3 cut(s)	89, 130, 280
AluI	AGCT	3 cut(s)	89, 130, 280
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	3 cut(s)	65, 152, 165
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	232, 265
BamHI	GGATCC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	33, 278
BlsI	GCNGC	2 cut(s)	34, 279
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	7, 241
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	7, 241
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	6
Bsp143I	GATC	4 cut(s)	70, 97, 157, 255
BspACI	CCGC	2 cut(s)	32, 122
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	65, 152, 165
BspQI	GCTCTTC	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	7, 241
BssMI	GATC	4 cut(s)	70, 97, 157, 255
BssNAI	GTATAC	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	47
Bst1107I	GTATAC	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	52, 166, 218
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	4 cut(s)	73, 100, 160, 258
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	4 cut(s)	70, 97, 157, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	97, 157
BstYI	RGATCY	2 cut(s)	97, 157
BstZ17I	GTATAC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	16, 214, 241
CviJI	RGCY	6 cut(s)	6, 35, 56, 89, 130, 280
CviKI_1	RGCY	6 cut(s)	6, 35, 56, 89, 130, 280
CviQI	GTAC	3 cut(s)	16, 214, 241
DdeI	CTNAG	3 cut(s)	52, 166, 218
DpnI	GATC	4 cut(s)	72, 99, 159, 257
DpnII	GATC	4 cut(s)	70, 97, 157, 255
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	263
FaiI	YATR	1 cut(s)	208
FaqI	GGGAC	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	33, 278
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	33, 278
GluI	GCNGC	2 cut(s)	33, 278
HaeIII	GGCC	1 cut(s)	6
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	16, 208
Hpy188I	TCNGA	4 cut(s)	75, 228, 234, 260
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	16, 208
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	189, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	52, 166, 218
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	47
Kzo9I	GATC	4 cut(s)	70, 97, 157, 255
LguI	GCTCTTC	1 cut(s)	96
LpnPI	CCDG	5 cut(s)	20, 26, 199, 222, 224
MaeII	ACGT	1 cut(s)	18
MalI	GATC	4 cut(s)	72, 99, 159, 257
MboI	GATC	4 cut(s)	70, 97, 157, 255
MboII	GAAGA	1 cut(s)	83
MflI	RGATCY	2 cut(s)	97, 157
MluCI	AATT	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	61, 92, 122, 215
MspA1I	CMGCKG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	4 cut(s)	70, 97, 157, 255
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	34, 279
Ppu21I	YACGTR	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	97, 157
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	3 cut(s)	17, 215, 242
RsaNI	GTAC	3 cut(s)	16, 214, 241
SapI	GCTCTTC	1 cut(s)	96
SatI	GCNGC	2 cut(s)	33, 278
Sau3AI	GATC	4 cut(s)	70, 97, 157, 255
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	8 cut(s)	21, 84, 91, 132, 213, 219, 226, 282
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	2 cut(s)	32, 122
TaiI	ACGT	1 cut(s)	21
TasI	AATT	1 cut(s)	271
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	1 cut(s)	14
TseI	GCWGC	1 cut(s)	277
TspRI	CASTG	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.