Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

32017042 .. 32018881

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCGGTTGTTATGGCTTCTCCGACCGAGGCTTTTACTGATCCACTCGACGTTAGTGGAAAAGTGGAAGCACTCCAGTGGCTGAATCCTTTAAGTTCTTCTTTGAGGGACATTAGTTCCAATAATATCAGTGGTGAAATTCCAAATGTGCTACCGCCTAATGCAACTCATATAAATCTGAGCCACAATATGTTATCTGGAGCCATAGGCAACATTTTTACTGGCCTCAAGAATTTAAGACAACTGGATTTGTCCTATAATAACTTTACCGCTCTGCCAAGTTCGTTTGGATCCCTCACAAATCTCAATGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.17

Weight (kDa)

4.96

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	53 - 103	3e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	272
AciI	CCGC	3 cut(s)	5, 155, 270
AclWI	GGATC	3 cut(s)	35, 285, 298
AcsI	RAATTY	2 cut(s)	138, 232
AleI	CACNNNNGTG	1 cut(s)	76
AlwI	GGATC	3 cut(s)	35, 285, 298
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	223
ApoI	RAATTY	2 cut(s)	138, 232
AsuHPI	GGTGA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	202, 292
BpmI	CTGGAG	2 cut(s)	59, 219
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	27
Bse1I	ACTGG	3 cut(s)	76, 226, 249
BseDI	CCNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	76, 226, 249
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	40, 290
BspACI	CCGC	3 cut(s)	5, 155, 270
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	202, 292
BspPI	GGATC	3 cut(s)	35, 285, 298
BsrBI	CCGCTC	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	76, 226, 249
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	40, 290
BstDEI	CTNAG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	43, 293
BstMBI	GATC	2 cut(s)	40, 290
BstMCI	CGRYCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	83, 136
CaiI	CAGNNNCTG	1 cut(s)	82
CviJI	RGCY	6 cut(s)	17, 32, 82, 183, 203, 225
CviKI_1	RGCY	6 cut(s)	17, 32, 82, 183, 203, 225
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	2 cut(s)	42, 292
DpnII	GATC	2 cut(s)	40, 290
FaiI	YATR	6 cut(s)	14, 171, 173, 191, 206, 258
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FaqI	GGGAC	1 cut(s)	122
GsuI	CTGGAG	2 cut(s)	59, 219
HaeIII	GGCC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	24, 180
Hpy188III	TCNNGA	2 cut(s)	198, 229
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	40, 290
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	4 cut(s)	89, 183, 207, 230
MaeII	ACGT	1 cut(s)	51
MalI	GATC	2 cut(s)	42, 292
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	2 cut(s)	40, 290
MboII	GAAGA	1 cut(s)	90
MflI	RGATCY	1 cut(s)	290
MluCI	AATT	2 cut(s)	138, 232
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	22, 99, 236, 305
MseI	TTAA	2 cut(s)	92, 236
MslI	CAYNNNNRTG	1 cut(s)	76
NdeII	GATC	2 cut(s)	40, 290
NlaIV	GGNNCC	2 cut(s)	202, 292
OliI	CACNNNNGTG	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	202, 292
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	92, 236
Sau3AI	GATC	2 cut(s)	40, 290
SetI	ASST	1 cut(s)	54
SgeI	CNNG	8 cut(s)	40, 59, 88, 210, 234, 241, 257, 291
SmiMI	CAYNNNNRTG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	138, 232
SsiI	CCGC	3 cut(s)	5, 155, 270
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	138, 232
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	92, 236
Tru9I	TTAA	2 cut(s)	92, 236
TscAI	CASTG	2 cut(s)	83, 136
TspRI	CASTG	2 cut(s)	83, 136
XapI	RAATTY	2 cut(s)	138, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.