Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009296.1

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

1623 .. 4250

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009296.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atggaaaagctgtatcggtacttgatagcgattttcgtcgcggctgttctggtggcgtccacagccgagagttttactgatccgaatgacctcgtagctcttcaagatctttacaagaccctcaaccaaccgccacagctgacgggttggagattggatggtggggatccttgcttggaatggcttcgtgtctcctgcatttacaatggagttgtatacctgaaccttgaaggtctgaatctgactgggtacatcagtcccaagatcagatatctttacaatttgcagctatttgatattagttccaataccattggtggtgaaattccacatgtcttaccccccaatgcgactgatataaatatggcatacaactatttgagccacaatattcccccatccttacatggcatgaaaagtctccgacatttgaatctgagccacaatttgttatctggacccattggcaatgtttttaccggcctacagaatttaagagaaatggatttgtcatataataactttactggagatcttccaagttcatttgaatccctcacaaatctcactggactgtacttgcagaataaccgattcactggatcagtttcttacctagctgaacttccactaattgatctgaatatcgaatgcaattatttcagtggatcgggggaaatagtcttcatcttccagggcacaactatccacccccctctggaaaagcaggcaagtgtcattgaacagaacatccacccccctccagcaactcggtcaagtgccatggagaagagcaacccctgtaccaaattaggtggacacaagaagaggagggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

279

Amino Acids

31.06

Weight (kDa)

6.05

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	41
AciI	CCGC	2 cut(s)	41, 131
AclWI	GGATC	5 cut(s)	74, 161, 174, 610, 676
AcsI	RAATTY	2 cut(s)	324, 490
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	4 cut(s)	20, 251, 578, 805
AfiI	CCNNNNNNNGG	1 cut(s)	718
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	104, 230, 433, 551, 743
AjnI	CCWGG	1 cut(s)	693
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	5 cut(s)	10, 98, 139, 289, 620
AluI	AGCT	5 cut(s)	10, 98, 139, 289, 620
Alw26I	GTCTC	2 cut(s)	196, 425
AlwI	GGATC	5 cut(s)	74, 161, 174, 610, 676
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	2 cut(s)	324, 490
Asp700I	GAANNNNTTC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	701
BaeI	ACNNNNGTAYC	4 cut(s)	241, 274, 787, 820
BamHI	GGATCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	676
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	152, 406
BciT130I	CCWGG	1 cut(s)	695
BcoDI	GTCTC	2 cut(s)	196, 425
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	485
BglII	AGATCT	2 cut(s)	106, 532
BisI	GCNGC	2 cut(s)	42, 287
BlsI	GCNGC	2 cut(s)	43, 288
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	2 cut(s)	168, 460
BmrFI	CCNGG	1 cut(s)	695
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	676
BpmI	CTGGAG	2 cut(s)	549, 747
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	694, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	4 cut(s)	250, 532, 574, 604
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	2 cut(s)	694, 783
BseGI	GGATG	3 cut(s)	163, 398, 750
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	4 cut(s)	250, 532, 574, 604
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	2 cut(s)	196, 425
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp143I	GATC	8 cut(s)	79, 106, 166, 264, 532, 602, 637, 668
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	2 cut(s)	41, 131
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	168, 460
BspPI	GGATC	5 cut(s)	74, 161, 174, 610, 676
BspQI	GCTCTTC	2 cut(s)	105, 785
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	4 cut(s)	250, 532, 574, 604
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	694, 783
BssMI	GATC	8 cut(s)	79, 106, 166, 264, 532, 602, 637, 668
BssNAI	GTATAC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	783
Bst1107I	GTATAC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	3 cut(s)	105, 785, 821
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	1 cut(s)	437
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	3 cut(s)	163, 398, 750
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	8 cut(s)	82, 109, 169, 267, 535, 605, 640, 671
BstMAI	GTCTC	2 cut(s)	196, 425
BstMBI	GATC	8 cut(s)	79, 106, 166, 264, 532, 602, 637, 668
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	693
BstSFI	CTRYAG	1 cut(s)	485
BstSLI	GKGCMC	1 cut(s)	701
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	3 cut(s)	106, 166, 532
BstYI	RGATCY	3 cut(s)	106, 166, 532
BstZ17I	GTATAC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	3 cut(s)	163, 398, 750
BtsIMutI	CAGTG	3 cut(s)	567, 597, 670
Cac8I	GCNNGC	1 cut(s)	729
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	4 cut(s)	19, 250, 577, 804
CspCI	CAANNNNNGTGG	2 cut(s)	796, 831
CviAII	CATG	4 cut(s)	332, 407, 412, 784
CviQI	GTAC	4 cut(s)	19, 250, 577, 804
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	8 cut(s)	81, 108, 168, 266, 534, 604, 639, 670
DpnII	GATC	8 cut(s)	79, 106, 166, 264, 532, 602, 637, 668
Eam1104I	CTCTTC	3 cut(s)	105, 785, 821
EarI	CTCTTC	3 cut(s)	105, 785, 821
Eco130I	CCWWGG	1 cut(s)	783
Eco32I	GATATC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	693
EcoRV	GATATC	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	4 cut(s)	335, 410, 415, 787
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	331, 406, 411, 783
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	42, 287
FokI	GGATG	3 cut(s)	170, 385, 737
Fsp4HI	GCNGC	2 cut(s)	42, 287
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	2 cut(s)	42, 287
GsuI	CTGGAG	2 cut(s)	549, 747
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	335, 410, 415, 787
HinfI	GANTC	4 cut(s)	238, 433, 551, 594
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	3 cut(s)	60, 217, 818
Hpy188I	TCNGA	7 cut(s)	84, 237, 243, 269, 425, 438, 642
Hpy188III	TCNNGA	3 cut(s)	104, 456, 719
Hpy8I	GTNNAC	3 cut(s)	60, 217, 818
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4V	TGCA	4 cut(s)	198, 286, 583, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	437
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	335, 410, 415, 787
Kzo9I	GATC	8 cut(s)	79, 106, 166, 264, 532, 602, 637, 668
LguI	GCTCTTC	2 cut(s)	105, 785
Lsp1109I	GCAGC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	617
MalI	GATC	8 cut(s)	81, 108, 168, 266, 534, 604, 639, 670
MboI	GATC	8 cut(s)	79, 106, 166, 264, 532, 602, 637, 668
MboII	GAAGA	6 cut(s)	92, 527, 676, 682, 802, 838
MflI	RGATCY	3 cut(s)	106, 166, 532
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	7 cut(s)	280, 324, 445, 490, 633, 655, 809
MmeI	TCCRAC	2 cut(s)	128, 448
MnlI	CCTC	7 cut(s)	101, 131, 566, 726, 771, 822, 825
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	695
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	8 cut(s)	79, 106, 166, 264, 532, 602, 637, 668
NlaIII	CATG	4 cut(s)	335, 410, 415, 787
NlaIV	GGNNCC	2 cut(s)	168, 460
NmeAIII	GCCGAG	1 cut(s)	91
NspI	RCATGY	1 cut(s)	335
PciI	ACATGT	1 cut(s)	331
PciSI	GCTCTTC	2 cut(s)	105, 785
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	4 cut(s)	238, 433, 551, 594
PkrI	GCNGC	2 cut(s)	43, 288
PscI	ACATGT	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	2 cut(s)	168, 460
PspPI	GGNCC	1 cut(s)	458
PsuI	RGATCY	3 cut(s)	106, 166, 532
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	4 cut(s)	20, 251, 578, 805
RsaNI	GTAC	4 cut(s)	19, 250, 577, 804
SapI	GCTCTTC	2 cut(s)	105, 785
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	42, 287
Sau3AI	GATC	8 cut(s)	79, 106, 166, 264, 532, 602, 637, 668
Sau96I	GGNCC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	1 cut(s)	701
SfcI	CTRYAG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	458
Sse9I	AATT	7 cut(s)	280, 324, 445, 490, 633, 655, 809
SsiI	CCGC	2 cut(s)	41, 131
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	648
TaqII	GACCGA	1 cut(s)	762
TasI	AATT	7 cut(s)	280, 324, 445, 490, 633, 655, 809
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	4 cut(s)	238, 433, 551, 594
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	3 cut(s)	574, 604, 670
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	428, 534, 676
TspRI	CASTG	3 cut(s)	574, 604, 670
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	2 cut(s)	324, 490
XceI	RCATGY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.