Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

22637600 .. 22639485

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG239900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCGAAGCTGTATCGGTGCGTGTACTTCATAGCGATTTTCGTGGCGGCTGTTCTGGAGGCCGAGACTTTTACTGATCCGCTTGACCTCGTAGCTCTTCAACATCTCTACAAGACCCTCAACCAACCGCCACAGCTGACGGGTTGGAGATTGGATGGTGGGGATCCTTGCGATCAAGACTGGAATGGAGGGTCGGGTTCTATTAAGGCCCACAGCCCGTCTGCGTTTGTAACAACCTGGAGAAGCGGCACGTGCGTATGGGAAATTGCAATTCTCACTGGACTGTACTTGCAGAATAACCGATTCACTGGATCAGTTTCTCACCTAGCTGAACTTCCACTAATTGATCTGAATATCGAATGCAATTATTTCAGTGGTATCATCCCCAGTCATTTTCAGTCCATACCAAATTTATGGATCGGGGGAAATAGTCTTCATCGTCCAGGGCACAACTATCCAGTATCCACCCCCCTCTGGCTCTCTGGAAACGCAGGCAAGTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

168

Amino Acids

18.56

Weight (kDa)

6.12

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	47, 80, 128, 246
AclWI	GGATC	5 cut(s)	71, 158, 171, 319, 425
AcsI	RAATTY	1 cut(s)	409
AcvI	CACGTG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	26, 287
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	236, 442
AluBI	AGCT	4 cut(s)	10, 95, 136, 329
AluI	AGCT	4 cut(s)	10, 95, 136, 329
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	5 cut(s)	71, 158, 171, 319, 425
AoxI	GGCC	2 cut(s)	60, 207
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	450
BamHI	GGATCC	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	425
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	238, 444
BciVI	GTATCC	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	2 cut(s)	48, 247
BlsI	GCNGC	2 cut(s)	49, 248
Bme1390I	CCNGG	2 cut(s)	238, 444
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	238, 444
BmrI	ACTGGG	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	2 cut(s)	77, 259
BsaAI	YACGTR	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	5 cut(s)	185, 283, 313, 387, 458
BseBI	CCWGG	2 cut(s)	238, 444
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	160, 381
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseNI	ACTGG	5 cut(s)	185, 283, 313, 387, 458
BseSI	GKGCMC	1 cut(s)	450
BshFI	GGCC	2 cut(s)	62, 209
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	62, 209
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	6 cut(s)	76, 163, 172, 311, 346, 417
BspACI	CCGC	4 cut(s)	47, 80, 128, 246
BspANI	GGCC	2 cut(s)	62, 209
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	5 cut(s)	71, 158, 171, 319, 425
BspQI	GCTCTTC	1 cut(s)	102
BsrI	ACTGG	5 cut(s)	185, 283, 313, 387, 458
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	6 cut(s)	76, 163, 172, 311, 346, 417
Bst2UI	CCWGG	2 cut(s)	238, 444
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	102
BstBAI	YACGTR	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	160, 381
BstKTI	GATC	6 cut(s)	79, 166, 175, 314, 349, 420
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	6 cut(s)	76, 163, 172, 311, 346, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	2 cut(s)	238, 444
BstSCI	CCNGG	2 cut(s)	236, 442
BstSLI	GKGCMC	1 cut(s)	450
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	62, 209
BtsCI	GGATG	2 cut(s)	160, 381
BtsIMutI	CAGTG	3 cut(s)	276, 306, 379
Cac8I	GCNNGC	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	25, 286
CviJI	RGCY	9 cut(s)	10, 50, 62, 95, 136, 209, 216, 329, 478
CviKI_1	RGCY	9 cut(s)	10, 50, 62, 95, 136, 209, 216, 329, 478
CviQI	GTAC	2 cut(s)	25, 286
DpnI	GATC	6 cut(s)	78, 165, 174, 313, 348, 419
DpnII	GATC	6 cut(s)	76, 163, 172, 311, 346, 417
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco72I	CACGTG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	236, 442
FaiI	YATR	4 cut(s)	32, 259, 404, 415
Fnu4HI	GCNGC	2 cut(s)	48, 247
FokI	GGATG	2 cut(s)	167, 368
Fsp4HI	GCNGC	2 cut(s)	48, 247
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	2 cut(s)	48, 247
GsuI	CTGGAG	2 cut(s)	77, 259
HaeIII	GGCC	2 cut(s)	62, 209
HinfI	GANTC	1 cut(s)	303
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	3 cut(s)	56, 176, 483
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	269, 292, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	251
Kzo9I	GATC	6 cut(s)	76, 163, 172, 311, 346, 417
LguI	GCTCTTC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	6 cut(s)	78, 165, 174, 313, 348, 419
MboI	GATC	6 cut(s)	76, 163, 172, 311, 346, 417
MboII	GAAGA	2 cut(s)	89, 425
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	5 cut(s)	264, 270, 342, 364, 409
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	52, 98, 128, 182, 482
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	136
MspR9I	CCNGG	2 cut(s)	238, 444
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	2 cut(s)	238, 444
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeII	GATC	6 cut(s)	76, 163, 172, 311, 346, 417
NlaIV	GGNNCC	1 cut(s)	165
NmeAIII	GCCGAG	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	49, 248
PmaCI	CACGTG	1 cut(s)	252
PmlI	CACGTG	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	236, 442
PspCI	CACGTG	1 cut(s)	252
PspGI	CCWGG	2 cut(s)	236, 442
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	26, 287
RsaNI	GTAC	2 cut(s)	25, 286
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	48, 247
Sau3AI	GATC	6 cut(s)	76, 163, 172, 311, 346, 417
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	238, 444
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	8 cut(s)	12, 90, 97, 138, 239, 254, 327, 331
Sse9I	AATT	5 cut(s)	264, 270, 342, 364, 409
SsiI	CCGC	4 cut(s)	47, 80, 128, 246
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	236, 442
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	357
TasI	AATT	5 cut(s)	264, 270, 342, 364, 409
TatI	WGTACW	2 cut(s)	24, 285
TauI	GCSGC	2 cut(s)	50, 249
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	3 cut(s)	283, 313, 379
TspDTI	ATGAA	2 cut(s)	19, 425
TspRI	CASTG	3 cut(s)	283, 313, 379
XapI	RAATTY	1 cut(s)	409
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.