Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8335633.1

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 798

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8335633.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 424 bp

cttatcagtcgtagctcttcaagatctttacaagaccctcaaccaaccgccacagctgacgggttggagattggatggtggggatccttgcttagaatggcttcgtgtctcctgcatttacaatggagttgtatacctgaaccttgaaggtctgaatctgactgggtacatcagtcccaagatcagatatctttacaatttgcagctatttgatattagttccaataccattggtggtgaaattccacatgtcttaccccccaatgcgactgatataaatatggcatacaactatttgagccacaatattcccccatccttacatggcatgaaaagtctccgacatttgaatctgagccacaatttgttatctggacccattggcaatgtttttaccggcctacagaatttaagagaaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

15.66

Weight (kDa)

6.55

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	78, 91
AcsI	RAATTY	2 cut(s)	241, 407
AfaI	GTAC	1 cut(s)	168
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	21, 147, 350
AluBI	AGCT	3 cut(s)	15, 56, 206
AluI	AGCT	3 cut(s)	15, 56, 206
Alw26I	GTCTC	2 cut(s)	113, 342
AlwI	GGATC	2 cut(s)	78, 91
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	241, 407
Asp700I	GAANNNNTTC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	375
BaeI	ACNNNNGTAYC	2 cut(s)	158, 191
BamHI	GGATCC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	2 cut(s)	69, 323
BcoDI	GTCTC	2 cut(s)	113, 342
BfmI	CTRYAG	1 cut(s)	402
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	85, 377
BmrI	ACTGGG	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	80, 315
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	113, 342
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	23, 83, 181
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	85, 377
BspPI	GGATC	2 cut(s)	78, 91
BspQI	GCTCTTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	396
BssMI	GATC	3 cut(s)	23, 83, 181
BssNAI	GTATAC	1 cut(s)	134
Bst1107I	GTATAC	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	92, 354
BstF5I	GGATG	2 cut(s)	80, 315
BstKTI	GATC	3 cut(s)	26, 86, 184
BstMAI	GTCTC	2 cut(s)	113, 342
BstMBI	GATC	3 cut(s)	23, 83, 181
BstNSI	RCATGY	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	215
BstX2I	RGATCY	2 cut(s)	23, 83
BstYI	RGATCY	2 cut(s)	23, 83
BstZ17I	GTATAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	80, 315
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	3 cut(s)	249, 324, 329
CviJI	RGCY	7 cut(s)	15, 56, 101, 206, 301, 358, 400
CviKI_1	RGCY	7 cut(s)	15, 56, 101, 206, 301, 358, 400
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	2 cut(s)	92, 354
DpnI	GATC	3 cut(s)	25, 85, 183
DpnII	GATC	3 cut(s)	23, 83, 181
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	189
FaeI	CATG	3 cut(s)	252, 327, 332
FaiI	YATR	7 cut(s)	134, 250, 276, 282, 287, 325, 330
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	248, 323, 328
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	87, 302
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	397
Hin1II	CATG	3 cut(s)	252, 327, 332
HinfI	GANTC	2 cut(s)	155, 350
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	5 cut(s)	154, 160, 186, 342, 355
Hpy188III	TCNNGA	2 cut(s)	21, 373
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	115, 203
HpyF3I	CTNAG	2 cut(s)	92, 354
Hsp92II	CATG	3 cut(s)	252, 327, 332
Kzo9I	GATC	3 cut(s)	23, 83, 181
LguI	GCTCTTC	1 cut(s)	22
LpnPI	CCDG	5 cut(s)	125, 148, 150, 358, 410
Lsp1109I	GCAGC	1 cut(s)	215
MalI	GATC	3 cut(s)	25, 85, 183
MboI	GATC	3 cut(s)	23, 83, 181
MboII	GAAGA	1 cut(s)	9
MflI	RGATCY	2 cut(s)	23, 83
MluCI	AATT	4 cut(s)	197, 241, 362, 407
MmeI	TCCRAC	2 cut(s)	45, 365
MnlI	CCTC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	397
NdeII	GATC	3 cut(s)	23, 83, 181
NlaIII	CATG	3 cut(s)	252, 327, 332
NlaIV	GGNNCC	2 cut(s)	85, 377
NspI	RCATGY	1 cut(s)	252
PciI	ACATGT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	155, 350
PkrI	GCNGC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	85, 377
PspPI	GGNCC	1 cut(s)	375
PsuI	RGATCY	2 cut(s)	23, 83
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	3 cut(s)	23, 83, 181
Sau96I	GGNCC	1 cut(s)	375
SetI	ASST	6 cut(s)	17, 58, 139, 145, 152, 208
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	375
Sse9I	AATT	4 cut(s)	197, 241, 362, 407
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	308
TasI	AATT	4 cut(s)	197, 241, 362, 407
TfiI	GAWTC	2 cut(s)	155, 350
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	2 cut(s)	241, 407
XceI	RCATGY	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.