Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

20653083 .. 20699485

Gene Structure 46403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGAAGCTGCATCGGTCCGTGTACTTCATTGCGATTTTCGTCACGGCTGTTCTGGTGGTGTCCTCGGCCGAGATTTTTACTGATCCGCTTGACGTCGTAGCTCTTCAAGATCTCTACATGACCCTCAACCAACCGCCACAGCTGACGGGTTGGAGATTGGATGGTGGGGATCCTTGCGACCAAGACTGGAAAGGAGTGTTATGCTTTGGCTCTTCTGTGACATACCTTGTACTTAATGGTCTGAACCTCTCTGGCTATATTACTCCCGAGATCTATAATCTCTACAGTTTGAACCTACTGGATATTAGTTCCAATACCATTGGTGGTGAAATTCCATATGTCTTACCCCCCAATGCGACTTATATAAATATGGCATACAACAATTTGAGCCACAATATTCCCCCATCCTTACATGGCATGAAAAGTCTCCGACATTTGAATCTGAGCCACAATTTGTTATCTGGACCCATTGGCAATGTTTTTACCGGCCTACAGAATTTAAGAGAAATGGATTTGTCATATAATAACTTTACTGGAGATCTTCCAAGTTCATTTGAATCCCTCACAAATCTCACTGGACTGTACTTGCAGAATAACCGATTCACTGGATCAGTTTCTTACCTAGCTGAACTTCCACTAATTGATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

217

Amino Acids

24.02

Weight (kDa)

4.62

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 69	9.6e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	121 - 154	4.2e-06	Leucine rich repeat
LRR_8	PF13855	161 - 202	1.2e-08	Leucine rich repeat
LRR_4	PF12799	166 - 202	1.2e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AciI	CCGC	2 cut(s)	89, 137
AclWI	GGATC	4 cut(s)	80, 167, 180, 619
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	333, 499
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	3 cut(s)	26, 234, 587
AgsI	TTSAA	4 cut(s)	110, 295, 442, 560
AluBI	AGCT	4 cut(s)	10, 104, 145, 629
AluI	AGCT	4 cut(s)	10, 104, 145, 629
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	4 cut(s)	80, 167, 180, 619
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	69, 490
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	333, 499
AspS9I	GGNCC	2 cut(s)	18, 467
AsuHPI	GGTGA	1 cut(s)	341
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	18, 467
BamHI	GGATCC	1 cut(s)	172
BccI	CCATC	2 cut(s)	158, 415
BceAI	ACGGC	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	3 cut(s)	286, 494, 650
BglII	AGATCT	3 cut(s)	112, 273, 541
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	2 cut(s)	18, 467
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	18, 467
BmiI	GGNNCC	2 cut(s)	174, 469
BmsI	GCATC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	5 cut(s)	194, 306, 541, 583, 613
Bse3DI	GCAATG	2 cut(s)	30, 484
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	169, 407
BseMI	GCAATG	2 cut(s)	30, 484
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	5 cut(s)	194, 306, 541, 583, 613
BseX3I	CGGCCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	71, 492
BsiEI	CGRYCG	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	489
BsmAI	GTCTC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	71, 492
BsoBI	CYCGRG	1 cut(s)	269
Bsp143I	GATC	7 cut(s)	85, 112, 172, 273, 541, 611, 646
BspACI	CCGC	2 cut(s)	89, 137
BspANI	GGCC	2 cut(s)	71, 492
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	174, 469
BspPI	GGATC	4 cut(s)	80, 167, 180, 619
BspQI	GCTCTTC	2 cut(s)	111, 220
BsrDI	GCAATG	2 cut(s)	30, 484
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	5 cut(s)	194, 306, 541, 583, 613
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	7 cut(s)	85, 112, 172, 273, 541, 611, 646
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	290, 585
Bst6I	CTCTTC	2 cut(s)	111, 220
BstACI	GRCGYC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	169, 407
BstKTI	GATC	7 cut(s)	88, 115, 175, 276, 544, 614, 649
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	7 cut(s)	85, 112, 172, 273, 541, 611, 646
BstMCI	CGRYCG	1 cut(s)	72
BstSFI	CTRYAG	3 cut(s)	286, 494, 650
BstX2I	RGATCY	4 cut(s)	112, 172, 273, 541
BstYI	RGATCY	4 cut(s)	112, 172, 273, 541
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	71, 492
BtsCI	GGATG	2 cut(s)	169, 407
BtsIMutI	CAGTG	2 cut(s)	576, 606
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	2 cut(s)	18, 467
CpoI	CGGWCCG	1 cut(s)	18
Csp6I	GTAC	3 cut(s)	25, 233, 586
CspI	CGGWCCG	1 cut(s)	18
CviAII	CATG	3 cut(s)	121, 416, 421
CviQI	GTAC	3 cut(s)	25, 233, 586
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	7 cut(s)	87, 114, 174, 275, 543, 613, 648
DpnII	GATC	7 cut(s)	85, 112, 172, 273, 541, 611, 646
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	111, 220
EarI	CTCTTC	2 cut(s)	111, 220
EclXI	CGGCCG	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	18, 467
Eco52I	CGGCCG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	269
FaeI	CATG	3 cut(s)	124, 419, 424
FatI	CATG	3 cut(s)	120, 415, 420
FauNDI	CATATG	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	176, 394
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	71, 492
HapII	CCGG	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	124, 419, 424
HinfI	GANTC	3 cut(s)	442, 560, 603
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	246, 434, 447
Hpy188III	TCNNGA	3 cut(s)	110, 269, 465
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	290, 585
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	13, 592
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	124, 419, 424
Kzo9I	GATC	7 cut(s)	85, 112, 172, 273, 541, 611, 646
LguI	GCTCTTC	2 cut(s)	111, 220
LpnPI	CCDG	9 cut(s)	41, 175, 240, 287, 450, 502, 522, 564, 594
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	43, 220
MalI	GATC	7 cut(s)	87, 114, 174, 275, 543, 613, 648
MboI	GATC	7 cut(s)	85, 112, 172, 273, 541, 611, 646
MboII	GAAGA	3 cut(s)	98, 207, 536
MflI	RGATCY	4 cut(s)	112, 172, 273, 541
MluCI	AATT	5 cut(s)	333, 385, 454, 499, 642
MmeI	TCCRAC	2 cut(s)	134, 457
MnlI	CCTC	4 cut(s)	76, 137, 260, 575
MseI	TTAA	2 cut(s)	237, 503
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	489
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	7 cut(s)	85, 112, 172, 273, 541, 611, 646
NlaIII	CATG	3 cut(s)	124, 419, 424
NlaIV	GGNNCC	2 cut(s)	174, 469
NmeAIII	GCCGAG	2 cut(s)	47, 97
NmuCI	GTSAC	2 cut(s)	43, 220
PciSI	GCTCTTC	2 cut(s)	111, 220
PfeI	GAWTC	3 cut(s)	442, 560, 603
PkrI	GCNGC	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	174, 469
PspPI	GGNCC	2 cut(s)	18, 467
PsuI	RGATCY	4 cut(s)	112, 172, 273, 541
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	3 cut(s)	26, 234, 587
RsaNI	GTAC	3 cut(s)	25, 233, 586
Rsr2I	CGGWCCG	1 cut(s)	18
RsrII	CGGWCCG	1 cut(s)	18
SapI	GCTCTTC	2 cut(s)	111, 220
SaqAI	TTAA	2 cut(s)	237, 503
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	7 cut(s)	85, 112, 172, 273, 541, 611, 646
Sau96I	GGNCC	2 cut(s)	18, 467
SetI	ASST	9 cut(s)	12, 99, 106, 147, 231, 252, 300, 627, 631
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	3 cut(s)	286, 494, 650
SinI	GGWCC	2 cut(s)	18, 467
Sse9I	AATT	5 cut(s)	333, 385, 454, 499, 642
SsiI	CCGC	2 cut(s)	89, 137
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	1 cut(s)	626
TaaI	ACNGT	2 cut(s)	290, 585
TaiI	ACGT	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	5 cut(s)	333, 385, 454, 499, 642
TatI	WGTACW	3 cut(s)	24, 232, 585
TfiI	GAWTC	3 cut(s)	442, 560, 603
Tru1I	TTAA	2 cut(s)	237, 503
Tru9I	TTAA	2 cut(s)	237, 503
TscAI	CASTG	2 cut(s)	583, 613
TseFI	GTSAC	2 cut(s)	43, 220
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	2 cut(s)	43, 220
TspDTI	ATGAA	3 cut(s)	19, 437, 543
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	2 cut(s)	583, 613
VpaK11BI	GGWCC	2 cut(s)	18, 467
XapI	RAATTY	2 cut(s)	333, 499
XspI	CTAG	1 cut(s)	626
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.