Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

27455187 .. 27457724

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGAAGCTGTATCGGCGCGTGTACTTACTACAGATTTTCGTCGCGGCTGTTCTGGTGGCGTCCTCAGCCGAGATTTTTACTGATCCGCTTGACCTCGTAGCTCTTCAAGATCTTTACAAGACTCTCAACCAACCGCCACAGCTGACGGGTTGGAGATTGGATGGTGGGGATCCTTGCTTAGAATGGCTTGGTGTCTCCTGCATTTACAACGGAGTTGTATACCTGTACCTTGAAGGTCTGAATCTGACTGGGTACATCAGTCCCAAGATCAGATATCTTTACAATTTGCAGCTATTGAATCTGAGCCACAATTTGTTATCTGGACCCATTGGCAATGTTTTTACCGGCCTACAGAATTTGAGAGAAATGGATTTGTCATATAATAACTTTACTGGAGATCTTCCAAGTTCATTTGAATCCCTCACAAATCTCACTGGACTGTACTTCCAGAATAACCAATTCACTGGATCAGTTGCTTACCTAGCTGAACTTCCACTAATTGATCTGAATATCGAATGCAATTATTTCAGTGGTATCATTCCCAGACAGTTTCAGTCCATACCAAATTTATGGATCGGGGGAAATAGTCTTCATCTTCCAGGGCACAACTATCCACCCCACTCTGGAAAAGCAGGCAAGTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

216

Amino Acids

24.19

Weight (kDa)

5.42

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 68	9e-07	Leucine rich repeat N-terminal domain
LRR_8	PF13855	92 - 131	4.2e-06	Leucine rich repeat
LRR_8	PF13855	96 - 155	5.2e-08	Leucine rich repeat
LRR_4	PF12799	119 - 155	6.4e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	2 cut(s)	21, 47
AciI	CCGC	3 cut(s)	47, 89, 137
AclWI	GGATC	5 cut(s)	80, 167, 180, 478, 584
AcsI	RAATTY	2 cut(s)	358, 568
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	4 cut(s)	26, 230, 257, 446
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	110, 236, 301, 419
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	5 cut(s)	10, 104, 145, 295, 488
AluI	AGCT	5 cut(s)	10, 104, 145, 295, 488
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	5 cut(s)	80, 167, 180, 478, 584
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	358, 568
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	609
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BamHI	GGATCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	584
BbvCI	CCTCAGC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	2 cut(s)	32, 353
BglII	AGATCT	2 cut(s)	112, 400
BisI	GCNGC	2 cut(s)	48, 293
BlsI	GCNGC	2 cut(s)	49, 294
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	174, 328
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	584
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	602
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	4 cut(s)	256, 400, 442, 472
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	81, 296
BseNI	ACTGG	4 cut(s)	256, 400, 442, 472
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	21, 47
BshFI	GGCC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	8 cut(s)	85, 112, 172, 270, 400, 470, 505, 576
BspACI	CCGC	3 cut(s)	47, 89, 137
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	2 cut(s)	80, 297
BspFNI	CGCG	2 cut(s)	21, 47
BspLI	GGNNCC	2 cut(s)	174, 328
BspPI	GGATC	5 cut(s)	80, 167, 180, 478, 584
BspQI	GCTCTTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	4 cut(s)	256, 400, 442, 472
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	8 cut(s)	85, 112, 172, 270, 400, 470, 505, 576
BssNAI	GTATAC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	62
Bst1107I	GTATAC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	2 cut(s)	444, 552
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	637
BstDEI	CTNAG	3 cut(s)	67, 181, 305
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	2 cut(s)	21, 47
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	8 cut(s)	88, 115, 175, 273, 403, 473, 508, 579
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	8 cut(s)	85, 112, 172, 270, 400, 470, 505, 576
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 68, 485
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	2 cut(s)	32, 353
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	2 cut(s)	21, 47
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	3 cut(s)	112, 172, 400
BstXI	CCANNNNNNTGG	2 cut(s)	467, 573
BstYI	RGATCY	3 cut(s)	112, 172, 400
BstZ17I	GTATAC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	435, 465, 538
Cac8I	GCNNGC	1 cut(s)	637
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	4 cut(s)	25, 229, 256, 445
CviQI	GTAC	4 cut(s)	25, 229, 256, 445
DdeI	CTNAG	3 cut(s)	67, 181, 305
DpnI	GATC	8 cut(s)	87, 114, 174, 272, 402, 472, 507, 578
DpnII	GATC	8 cut(s)	85, 112, 172, 270, 400, 470, 505, 576
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	601
EcoRV	GATATC	1 cut(s)	278
FaiI	YATR	5 cut(s)	223, 382, 384, 563, 574
FaqI	GGGAC	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	48, 293
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	48, 293
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	2 cut(s)	48, 293
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	4 cut(s)	124, 244, 301, 419
HpaII	CCGG	1 cut(s)	348
Hpy166II	GTNNAC	2 cut(s)	25, 223
Hpy188I	TCNGA	5 cut(s)	243, 249, 275, 306, 510
Hpy188III	TCNNGA	4 cut(s)	110, 324, 451, 627
Hpy8I	GTNNAC	2 cut(s)	25, 223
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	444, 552
HpyCH4V	TGCA	3 cut(s)	204, 292, 522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 68, 485
HpyF3I	CTNAG	3 cut(s)	67, 181, 305
Hsp92I	GRCGYC	1 cut(s)	62
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	8 cut(s)	85, 112, 172, 270, 400, 470, 505, 576
LguI	GCTCTTC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	485
MalI	GATC	8 cut(s)	87, 114, 174, 272, 402, 472, 507, 578
MboI	GATC	8 cut(s)	85, 112, 172, 270, 400, 470, 505, 576
MboII	GAAGA	4 cut(s)	98, 395, 584, 590
MflI	RGATCY	3 cut(s)	112, 172, 400
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	7 cut(s)	286, 313, 358, 461, 501, 523, 568
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	76, 107, 434
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	2 cut(s)	21, 47
MwoI	GCNNNNNNNGC	3 cut(s)	16, 68, 485
NdeII	GATC	8 cut(s)	85, 112, 172, 270, 400, 470, 505, 576
NlaIV	GGNNCC	2 cut(s)	174, 328
NmeAIII	GCCGAG	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	111
PctI	GAATGC	1 cut(s)	524
PfeI	GAWTC	3 cut(s)	244, 301, 419
PkrI	GCNGC	2 cut(s)	49, 294
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	174, 328
PspPI	GGNCC	1 cut(s)	326
PsuI	RGATCY	3 cut(s)	112, 172, 400
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	4 cut(s)	26, 230, 257, 446
RsaNI	GTAC	4 cut(s)	25, 229, 256, 445
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	2 cut(s)	48, 293
Sau3AI	GATC	8 cut(s)	85, 112, 172, 270, 400, 470, 505, 576
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	609
SfcI	CTRYAG	2 cut(s)	32, 353
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	7 cut(s)	286, 313, 358, 461, 501, 523, 568
SsiI	CCGC	3 cut(s)	47, 89, 137
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	2 cut(s)	444, 552
TaqI	TCGA	1 cut(s)	516
TasI	AATT	7 cut(s)	286, 313, 358, 461, 501, 523, 568
TatI	WGTACW	2 cut(s)	24, 444
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	244, 301, 419
TscAI	CASTG	3 cut(s)	442, 472, 538
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	402, 584
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	442, 472, 538
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	358, 568
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.