MD12G1060800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000664
Physical Location & Seq
Reverse (-)
7072111 .. 7072475
365 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1060800.v1.1.491

Sequence Viewer

Length: 216 bp
ATGACTGCCTATTTAATTTACTGGTTTACTTCTCGGAATGTCAGCCACATTATGTTATCTGGACCTGTTGGTGATGTACTTGTCTGGCTAGAGAATTTAAGAGAAGTGGATTTGTCAAAGAATTACTTCACCGAGATAACCAAAACCCTTCCGATGCTAAGTTGTGAGTGGTATTTTGGTTTAGTGTATTGTTTCCATTCCACCTTACATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.43

Weight (kDa)

5.78

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06820
fragaria_vesca FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis pycom14g04900
rosa_chinensis RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 94
AfaI GTAC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 83, 121
AvaII GGWCC 1 cut(s) 62
BfaI CTAG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmsI GCATC 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 77
CviJI RGCY 2 cut(s) 45, 88
CviKI_1 RGCY 2 cut(s) 45, 88
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 62
FaiI YATR 1 cut(s) 53
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FspBI CTAG 1 cut(s) 89
HphI GGTGA 2 cut(s) 83, 121
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 2 cut(s) 36, 153
Hpy188III TCNNGA 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 158
LpnPI CCDG 4 cut(s) 7, 45, 70, 78
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 89
MluCI AATT 3 cut(s) 15, 94, 121
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 3 cut(s) 14, 98, 214
PdmI GAANNNNTTC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 62
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 14, 98, 214
Sau96I GGNCC 1 cut(s) 62
SetI ASST 2 cut(s) 67, 206
SfaNI GCATC 1 cut(s) 144
SgeI CNNG 8 cut(s) 34, 45, 72, 77, 92, 97, 101, 145
SinI GGWCC 1 cut(s) 62
Sse9I AATT 3 cut(s) 15, 94, 121
SspMI CTAG 1 cut(s) 89
TasI AATT 3 cut(s) 15, 94, 121
TatI WGTACW 1 cut(s) 76
Tru1I TTAA 3 cut(s) 14, 98, 214
Tru9I TTAA 3 cut(s) 14, 98, 214
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.