Rh2DG561600

Protein STRUBBELIG-RECEPTOR FAMILY 2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
79055843 .. 79058705
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG561600.1

Sequence Viewer

Length: 1167 bp
ATGGCGACGCAGTACGTGGTTTTCACAGTGCTTGTCTTGGCGGTGGTTATGGCTTCTCAGGCTGAGGCTTTTACTGATCCACTTGACGTCACAGCTCTTCAAGAGCTTTACAAGTCCCTTAACACACTGCCACAGCTGACCGGTTGGAGATTGGATGGTGGGGATCCTTGCGATGAATCATGGAATGGAGTGTCCTGTTTTGGCTCCTCTGTGATGTACCTTGAGCTTTATGGTCTAGACCTCTCTGGGTCTATTACTGCCGCGCTGTATAATCTGAAAAAATTGAAGCAACTGGATATTAGTTCCAATAGCATTGGTGGTGAACTTCCATGTGTGTTACCCCCTCATGCAACTCATATAAATATGGCACGCAACAAATTCACTGGAAATATCCCCCAGAGTTTATCTGACATGAAATATCTTGTGTATTTGAATCTAAGCCGCAATTTGTTATCAGGACCCTTTGGCAATGTTTTTAATGGCCTACAAAGTCTAAGGCAATTGGATTTGTCTTATAATAATTTTACTGGAGATGTGCTCAGTTCATTTGGATCTCTTAATAATCTCACTGGGTTGTACTTGCAGAATAATCAATTCACTGCATCAGTTGTTTATCCAGTAATTGATATGAAAATCCAAGAAAACTATGGTGTCGTCCCAAACCATTTTCAGTCCATACCAAATTTGTGGATCGGGGGTAATGGTGAAGTATCGGGGAACAACTGTCCACCCTGGGATGTTCCTCTGGAAACCAAGGCAAGGGACTCAGAACAAAACTCCTATCTCCCTCCAGCAACTCAGTCAAGCGTTAAGAACTCAGGACACAAGAATAAGAAGCTTGGAATATTCGTCACTATAATTGGTTGCATCGTGGCGGCAGCTGCAGCCATAGCATGCATGGCAGCCCGCCAGGATGCAAACAATGAACCACCACCTAAGCAGCCCGCTCGGCTTCTATTTTCTCCCCCGAGGCCACCTGAGAGGCTAGAACTTGATGGAAGGTTCATTGCAGGACAGAATTACGAAATAATTGTTGCTGGTAAAGCCTATCATGCTGATACAGAAGAAAAAGTAGTGAAGAAAGCAAAGAAAGACCAAGAGCCAGAGGAACCCCCTCCACAAGTTAAACTTGAGACTTTCATCGACCATGTTGAGGAAGATGACTGA

Protein Analysis

388

Amino Acids

42.52

Weight (kDa)

5.1

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 66 8.6e-08 Leucine rich repeat N-terminal domain
LRR_8 PF13855 158 - 199 2.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000664)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AatII GACGTC 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 947
AccII CGCG 1 cut(s) 263
AciI CCGC 6 cut(s) 41, 261, 442, 875, 907, 945
AclWI GGATC 5 cut(s) 71, 158, 171, 559, 698
AcsI RAATTY 2 cut(s) 377, 682
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 14, 218, 578
AfiI CCNNNNNNNGG 2 cut(s) 759, 1153
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 3 cut(s) 101, 286, 433
AjnI CCWGG 2 cut(s) 731, 909
AluBI AGCT 6 cut(s) 95, 106, 136, 226, 838, 881
AluI AGCT 6 cut(s) 95, 106, 136, 226, 838, 881
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 1127
AlwI GGATC 5 cut(s) 71, 158, 171, 559, 698
Ama87I CYCGRG 1 cut(s) 967
AoxI GGCC 2 cut(s) 481, 971
ApeKI GCWGC 5 cut(s) 878, 881, 884, 902, 940
ApoI RAATTY 2 cut(s) 377, 682
AsiGI ACCGGT 1 cut(s) 140
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 332, 716
AvaI CYCGRG 1 cut(s) 967
AvaII GGWCC 1 cut(s) 458
BamHI GGATCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 540
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 5 cut(s) 868, 890, 896, 914, 952
BccI CCATC 2 cut(s) 149, 989
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BciT130I CCWGG 2 cut(s) 733, 911
BcoDI GTCTC 1 cut(s) 1127
BfaI CTAG 2 cut(s) 236, 986
BfmI CTRYAG 1 cut(s) 882
BglI GCCNNNNNGGC 1 cut(s) 949
BisI GCNGC 8 cut(s) 261, 442, 876, 879, 882, 885, 903, 941
BlsI GCNGC 8 cut(s) 262, 443, 877, 880, 883, 886, 904, 942
Bme1390I CCNGG 2 cut(s) 733, 911
Bme18I GGWCC 1 cut(s) 458
BmeT110I CYCGRG 1 cut(s) 967
BmgT120I GGNCC 1 cut(s) 458
BmiI GGNNCC 4 cut(s) 165, 205, 460, 1110
BmrFI CCNGG 2 cut(s) 733, 911
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 3 cut(s) 611, 876, 904
BmuI ACTGGG 1 cut(s) 579
BplI GAGNNNNNCTC 2 cut(s) 522, 554
BpmI CTGGAG 2 cut(s) 549, 774
Bpu10I CCTNAGC 2 cut(s) 63, 936
BpuEI CTTGAG 2 cut(s) 242, 1151
BsaAI YACGTR 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 731, 732, 753, 968
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 759, 1153
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 5 cut(s) 297, 388, 532, 574, 617
Bse3DI GCAATG 2 cut(s) 475, 1005
BseBI CCWGG 2 cut(s) 733, 911
BseDI CCNNGG 4 cut(s) 731, 732, 753, 968
BseGI GGATG 3 cut(s) 160, 742, 919
BseLI CCNNNNNNNGG 2 cut(s) 759, 1153
BseMI GCAATG 2 cut(s) 475, 1005
BseMII CTCAG 7 cut(s) 54, 71, 553, 780, 812, 831, 969
BseNI ACTGG 5 cut(s) 297, 388, 532, 574, 617
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 5 cut(s) 868, 890, 896, 914, 952
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 2 cut(s) 483, 973
BshTI ACCGGT 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 967
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 3 cut(s) 100, 641, 776
BslI CCNNNNNNNGG 2 cut(s) 759, 1153
BsmAI GTCTC 1 cut(s) 1127
BsmFI GGGAC 3 cut(s) 100, 641, 776
BsnI GGCC 2 cut(s) 483, 973
BsoBI CYCGRG 1 cut(s) 967
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 4 cut(s) 76, 163, 551, 690
BspACI CCGC 6 cut(s) 41, 261, 442, 875, 907, 945
BspANI GGCC 2 cut(s) 483, 973
BspCNI CTCAG 7 cut(s) 55, 70, 552, 779, 811, 830, 970
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 4 cut(s) 165, 205, 460, 1110
BspMAI CTGCAG 1 cut(s) 886
BspPI GGATC 5 cut(s) 71, 158, 171, 559, 698
BspQI GCTCTTC 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 947
BsrDI GCAATG 2 cut(s) 475, 1005
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 5 cut(s) 297, 388, 532, 574, 617
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 4 cut(s) 731, 732, 753, 968
BssMI GATC 4 cut(s) 76, 163, 551, 690
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 2 cut(s) 733, 911
Bst4CI ACNGT 2 cut(s) 28, 725
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 4 cut(s) 370, 895, 907, 945
BstF5I GGATG 3 cut(s) 160, 742, 919
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 4 cut(s) 79, 166, 554, 693
BstMAI GTCTC 1 cut(s) 1127
BstMBI GATC 4 cut(s) 76, 163, 551, 690
BstMWI GCNNNNNNNGC 8 cut(s) 59, 881, 884, 890, 899, 949, 1043, 1052
BstNI CCWGG 2 cut(s) 733, 911
BstNSI RCATGY 1 cut(s) 897
BstSCI CCNGG 2 cut(s) 731, 909
BstSFI CTRYAG 1 cut(s) 882
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 5 cut(s) 868, 890, 896, 914, 952
BstX2I RGATCY 2 cut(s) 163, 551
BstXI CCANNNNNNTGG 1 cut(s) 687
BstYI RGATCY 2 cut(s) 163, 551
BsuRI GGCC 2 cut(s) 483, 973
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 3 cut(s) 160, 742, 919
BtsI GCAGTG 2 cut(s) 125, 597
BtsIMutI CAGTG 5 cut(s) 33, 125, 381, 567, 597
Cac8I GCNNGC 4 cut(s) 370, 895, 907, 945
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 458
CseI GACGC 1 cut(s) 16
Csp6I GTAC 3 cut(s) 13, 217, 577
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 8 cut(s) 180, 330, 347, 412, 894, 898, 1052, 1148
CviQI GTAC 3 cut(s) 13, 217, 577
DpnI GATC 4 cut(s) 78, 165, 553, 692
DpnII GATC 4 cut(s) 76, 163, 551, 690
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 967
EcoO109I RGGNCCY 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 731, 909
EcoT14I CCWWGG 1 cut(s) 753
EcoT22I ATGCAT 1 cut(s) 899
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 8 cut(s) 183, 333, 350, 415, 897, 901, 1055, 1151
FalI AAGNNNNNCTT 2 cut(s) 1113, 1145
FaqI GGGAC 3 cut(s) 100, 641, 776
FatI CATG 8 cut(s) 179, 329, 346, 411, 893, 897, 1051, 1147
FauI CCCGC 2 cut(s) 914, 952
Fnu4HI GCNGC 8 cut(s) 261, 442, 876, 879, 882, 885, 903, 941
FokI GGATG 3 cut(s) 167, 749, 926
Fsp4HI GCNGC 8 cut(s) 261, 442, 876, 879, 882, 885, 903, 941
FspBI CTAG 2 cut(s) 236, 986
GlaI GCGC 1 cut(s) 264
GluI GCNGC 8 cut(s) 261, 442, 876, 879, 882, 885, 903, 941
GsuI CTGGAG 2 cut(s) 549, 774
HaeIII GGCC 2 cut(s) 483, 973
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 8 cut(s) 183, 333, 350, 415, 897, 901, 1055, 1151
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 3 cut(s) 176, 433, 764
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 332, 716
Hpy166II GTNNAC 2 cut(s) 323, 728
Hpy188I TCNGA 3 cut(s) 276, 409, 769
Hpy188III TCNNGA 5 cut(s) 101, 236, 456, 746, 819
Hpy8I GTNNAC 2 cut(s) 323, 728
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 993
HpyCH4III ACNGT 2 cut(s) 28, 725
HpyCH4IV ACGT 2 cut(s) 15, 87
HpyCH4V TGCA 8 cut(s) 350, 583, 602, 867, 884, 897, 917, 1010
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 881, 884, 890, 899, 949, 1043, 1052
HpySE526I ACGT 2 cut(s) 15, 87
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 8 cut(s) 183, 333, 350, 415, 897, 901, 1055, 1151
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 4 cut(s) 76, 163, 551, 690
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 5 cut(s) 868, 890, 896, 914, 952
LweI GCATC 3 cut(s) 611, 876, 904
MaeI CTAG 2 cut(s) 236, 986
MaeII ACGT 2 cut(s) 15, 87
MaeIII GTNAC 3 cut(s) 88, 336, 850
MalI GATC 4 cut(s) 78, 165, 553, 692
MbiI CCGCTC 1 cut(s) 947
MboI GATC 4 cut(s) 76, 163, 551, 690
MboII GAAGA 3 cut(s) 89, 1076, 1090
MfeI CAATTG 1 cut(s) 500
MflI RGATCY 2 cut(s) 163, 551
MhlI GDGCHC 1 cut(s) 540
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 1 cut(s) 125
Mph1103I ATGCAT 1 cut(s) 899
MseI TTAA 5 cut(s) 120, 477, 558, 810, 1125
MspA1I CMGCKG 2 cut(s) 136, 881
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 733, 911
MunI CAATTG 1 cut(s) 500
MvaI CCWGG 2 cut(s) 733, 911
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 8 cut(s) 59, 881, 884, 890, 899, 949, 1043, 1052
NdeII GATC 4 cut(s) 76, 163, 551, 690
NlaIII CATG 8 cut(s) 183, 333, 350, 415, 897, 901, 1055, 1151
NlaIV GGNNCC 4 cut(s) 165, 205, 460, 1110
NmeAIII GCCGAG 1 cut(s) 928
NmuCI GTSAC 2 cut(s) 88, 850
NsiI ATGCAT 1 cut(s) 899
NspI RCATGY 1 cut(s) 897
PaeI GCATGC 1 cut(s) 897
PasI CCCWGGG 1 cut(s) 732
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 2 cut(s) 176, 433
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 8 cut(s) 262, 443, 877, 880, 883, 886, 904, 942
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
Ppu21I YACGTR 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 458
PsiI TTATAA 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 731, 909
PspGI CCWGG 2 cut(s) 731, 909
PspN4I GGNNCC 4 cut(s) 165, 205, 460, 1110
PspPI GGNCC 1 cut(s) 458
PspPPI RGGWCCY 1 cut(s) 458
PstI CTGCAG 1 cut(s) 886
PsuI RGATCY 2 cut(s) 163, 551
PvuII CAGCTG 2 cut(s) 136, 881
RsaI GTAC 3 cut(s) 14, 218, 578
RsaNI GTAC 3 cut(s) 13, 217, 577
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 5 cut(s) 120, 477, 558, 810, 1125
SatI GCNGC 8 cut(s) 261, 442, 876, 879, 882, 885, 903, 941
Sau3AI GATC 4 cut(s) 76, 163, 551, 690
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 2 cut(s) 733, 911
SduI GDGCHC 1 cut(s) 540
SfaNI GCATC 3 cut(s) 611, 876, 904
SfcI CTRYAG 1 cut(s) 882
SinI GGWCC 1 cut(s) 458
SmlI CTYRAG 2 cut(s) 221, 1130
SmoI CTYRAG 2 cut(s) 221, 1130
SphI GCATGC 1 cut(s) 897
SsiI CCGC 6 cut(s) 41, 261, 442, 875, 907, 945
SspI AATATT 1 cut(s) 846
SspMI CTAG 2 cut(s) 236, 986
StyD4I CCNGG 2 cut(s) 731, 909
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 2 cut(s) 28, 725
TaiI ACGT 2 cut(s) 18, 90
TaqI TCGA 1 cut(s) 1143
TatI WGTACW 1 cut(s) 576
TauI GCSGC 3 cut(s) 263, 444, 878
TfiI GAWTC 2 cut(s) 176, 433
Tru1I TTAA 5 cut(s) 120, 477, 558, 810, 1125
Tru9I TTAA 5 cut(s) 120, 477, 558, 810, 1125
TscAI CASTG 5 cut(s) 33, 132, 388, 574, 604
TseFI GTSAC 2 cut(s) 88, 850
TseI GCWGC 5 cut(s) 878, 881, 884, 902, 940
Tsp45I GTSAC 2 cut(s) 88, 850
TspDTI ATGAA 7 cut(s) 189, 428, 534, 644, 939, 994, 1129
TspRI CASTG 5 cut(s) 33, 132, 388, 574, 604
VpaK11BI GGWCC 1 cut(s) 458
XapI RAATTY 2 cut(s) 377, 682
XbaI TCTAGA 1 cut(s) 235
XceI RCATGY 1 cut(s) 897
XcmI CCANNNNNNNNNTGG 2 cut(s) 644, 895
XspI CTAG 2 cut(s) 236, 986
ZraI GACGTC 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.