MD13G1140200.v1.1

strubbelig-receptor family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
10803365 .. 10804183
819 bp
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UTR
Exon/CDS
Intron
MD13G1140200.v1.1.491

Sequence Viewer

Length: 243 bp
ATGGCTGATCACCCTTCTGCTGACTCGCTCTCTGTGGCTCGCTGGCTCACTGAGTTCGTGCTAATCGCCTCGACTTTGGCTGCTCTGCCTCTCGTTAGTGGCACCACCGATGCTTCTGATGTTCAAGCACTTCAGGTATTGTACACCTCAGTAAACAGTCCTTCTCAGCTAATCGGTTGGAAAAGTAGTGGCGACGGACGGAGAGAGAGAGTGACGAAGTCGAAAGGCGGAGAAAGAGAGTGA

Protein Analysis

81

Amino Acids

8.52

Weight (kDa)

5.72

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000664)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AciI CCGC 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 67
BclI TGATCA 1 cut(s) 7
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 100
BseMII CTCAG 3 cut(s) 42, 162, 179
BseXI GCAGC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 101
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 3 cut(s) 43, 161, 178
BspLI GGNNCC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 141
BssMI GATC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 40, 44
BstDEI CTNAG 3 cut(s) 51, 148, 165
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 40, 44
Csp6I GTAC 1 cut(s) 142
CviJI RGCY 5 cut(s) 5, 38, 46, 80, 169
CviKI_1 RGCY 5 cut(s) 5, 38, 46, 80, 169
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 3 cut(s) 51, 148, 165
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EciI GGCGGA 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 116
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HinfI GANTC 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 144, 154
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 144, 154
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 24, 171
HpyCH4III ACNGT 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 51, 148, 165
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 2 cut(s) 28, 119
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 3 cut(s) 79, 99, 157
NdeII GATC 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 211
PflFI GACNNNGTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 103
PsyI GACNNNGTC 1 cut(s) 217
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 17
SetI ASST 3 cut(s) 138, 149, 171
SfaNI GCATC 1 cut(s) 100
SgeI CNNG 8 cut(s) 37, 51, 55, 70, 82, 104, 137, 146
SsiI CCGC 1 cut(s) 228
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 71, 221
TatI WGTACW 1 cut(s) 141
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 211
TspGWI ACGGA 2 cut(s) 210, 214
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.