Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002267.1

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

36653 .. 38539

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002267.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgctgtgtttagccacagatgcacattgccctgcccattttatatacttatgtaccaattttattgttttaatctgggcacctgcagtcacagctcttcaagagctttacaagtcccctaacacaccgccacagctgaccggttggagattggatggtggggatccttgcgatgaatcatggaatggagtgtcctgttttggctcctctgtgatgtaccttgagctttatggtctagacctctctgggtctattactgccgcgctgtataatctgaaaaaattgaagcaactgatcgggggtaatggttgtgaagtatcggggaacaactgtccaccctggaatgttcctctggaaaccaaggcaagggactcagaacaaaacacctatctccctccagcaactcagtcaagcgttaagaactcaggacacaagaataagaagcttggaatattcgtcactataattggttgcatcgtggcggcagctgctgccatagcatgcatggcagcccaccaggatgcaaacaatgaaccaccacctgagcagcctgctcggcttcaattttctcccccgaggccacctgagaggctagaacttgatggcaggttcattgcaggacagaattacgaaataattgttgctggtaaagcctatcatgctgatacagaagaaaaagtagtgaagaaagcaaagaaagaccaagagccagaggaaccccctccacaagttaaacttgacactttcatcgaccatgttgaggaagatgaccgacagatattcaagcttattggattctgtcatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

29.53

Weight (kDa)

5.39

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	2 cut(s)	91, 597
AccB1I	GGYRCC	1 cut(s)	79
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	128, 261, 482
AclWI	GGATC	2 cut(s)	158, 171
AfaI	GTAC	2 cut(s)	55, 218
AfiI	CCNNNNNNNGG	2 cut(s)	366, 760
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	101, 286, 563, 784
AjnI	CCWGG	2 cut(s)	338, 516
AluBI	AGCT	7 cut(s)	95, 106, 136, 226, 445, 488, 787
AluI	AGCT	7 cut(s)	95, 106, 136, 226, 445, 488, 787
AlwI	GGATC	2 cut(s)	158, 171
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	574
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	5 cut(s)	485, 488, 491, 509, 547
AsiGI	ACCGGT	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	82
BaeI	ACNNNNGTAYC	2 cut(s)	37, 70
BamHI	GGATCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	5 cut(s)	475, 478, 497, 521, 559
BccI	CCATC	2 cut(s)	149, 596
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	2 cut(s)	340, 518
BfaI	CTAG	2 cut(s)	236, 593
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	91, 597
BglI	GCCNNNNNGGC	1 cut(s)	556
BisI	GCNGC	7 cut(s)	261, 483, 486, 489, 492, 510, 548
BlsI	GCNGC	7 cut(s)	262, 484, 487, 490, 493, 511, 549
Bme1390I	CCNGG	2 cut(s)	340, 518
BmeT110I	CYCGRG	1 cut(s)	574
BmiI	GGNNCC	4 cut(s)	81, 165, 205, 717
BmrFI	CCNGG	2 cut(s)	340, 518
BmsI	GCATC	3 cut(s)	10, 483, 511
BpmI	CTGGAG	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	338, 360, 575
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 760
Bse118I	RCCGGY	1 cut(s)	140
Bse3DI	GCAATG	2 cut(s)	25, 612
BseBI	CCWGG	2 cut(s)	340, 518
BseDI	CCNNGG	3 cut(s)	338, 360, 575
BseGI	GGATG	2 cut(s)	160, 526
BseLI	CCNNNNNNNGG	2 cut(s)	366, 760
BseMI	GCAATG	2 cut(s)	25, 612
BseMII	CTCAG	5 cut(s)	387, 419, 438, 534, 576
BseRI	GAGGAG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	5 cut(s)	475, 478, 497, 521, 559
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	580
BshNI	GGYRCC	1 cut(s)	79
BshTI	ACCGGT	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	100, 383
BslI	CCNNNNNNNGG	2 cut(s)	366, 760
BsmFI	GGGAC	2 cut(s)	100, 383
BsnI	GGCC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	163, 294
BspACI	CCGC	3 cut(s)	128, 261, 482
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	5 cut(s)	386, 418, 437, 535, 577
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	81, 165, 205, 717
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	2 cut(s)	91, 597
BspPI	GGATC	2 cut(s)	158, 171
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	25, 612
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	338, 360, 575
BssMI	GATC	2 cut(s)	163, 294
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	340, 518
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	502, 552
BstDEI	CTNAG	5 cut(s)	373, 405, 424, 543, 585
BstF5I	GGATG	2 cut(s)	160, 526
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	166, 297
BstMBI	GATC	2 cut(s)	163, 294
BstMWI	GCNNNNNNNGC	9 cut(s)	20, 92, 488, 491, 497, 506, 556, 650, 659
BstNI	CCWGG	2 cut(s)	340, 518
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	2 cut(s)	338, 516
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	5 cut(s)	475, 478, 497, 521, 559
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	160, 526
BveI	ACCTGC	2 cut(s)	91, 597
Cac8I	GCNNGC	2 cut(s)	502, 552
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	54, 217
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	5 cut(s)	180, 501, 505, 659, 755
CviQI	GTAC	2 cut(s)	54, 217
DdeI	CTNAG	5 cut(s)	373, 405, 424, 543, 585
DpnI	GATC	2 cut(s)	165, 296
DpnII	GATC	2 cut(s)	163, 294
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	338, 516
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	5 cut(s)	183, 504, 508, 662, 758
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FaqI	GGGAC	2 cut(s)	100, 383
FatI	CATG	5 cut(s)	179, 500, 504, 658, 754
Fnu4HI	GCNGC	7 cut(s)	261, 483, 486, 489, 492, 510, 548
FokI	GGATG	2 cut(s)	167, 533
Fsp4HI	GCNGC	7 cut(s)	261, 483, 486, 489, 492, 510, 548
FspBI	CTAG	2 cut(s)	236, 593
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	7 cut(s)	261, 483, 486, 489, 492, 510, 548
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	5 cut(s)	183, 504, 508, 662, 758
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HindIII	AAGCTT	2 cut(s)	443, 785
HinfI	GANTC	3 cut(s)	176, 371, 795
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	276, 376
Hpy188III	TCNNGA	4 cut(s)	101, 236, 353, 426
Hpy8I	GTNNAC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	6 cut(s)	23, 86, 474, 504, 524, 617
HpyF10VI	GCNNNNNNNGC	9 cut(s)	20, 92, 488, 491, 497, 506, 556, 650, 659
HpyF3I	CTNAG	5 cut(s)	373, 405, 424, 543, 585
Hsp92II	CATG	5 cut(s)	183, 504, 508, 662, 758
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	163, 294
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	5 cut(s)	475, 478, 497, 521, 559
LweI	GCATC	3 cut(s)	10, 483, 511
MaeI	CTAG	2 cut(s)	236, 593
MaeIII	GTNAC	2 cut(s)	88, 457
MalI	GATC	2 cut(s)	165, 296
MboI	GATC	2 cut(s)	163, 294
MboII	GAAGA	4 cut(s)	89, 683, 697, 776
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	6 cut(s)	58, 281, 465, 563, 625, 636
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	217, 251, 360, 405, 570, 582, 706, 732, 754
Mph1103I	ATGCAT	1 cut(s)	506
MseI	TTAA	3 cut(s)	71, 417, 732
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	136, 488
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	340, 518
MvaI	CCWGG	2 cut(s)	340, 518
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	9 cut(s)	20, 92, 488, 491, 497, 506, 556, 650, 659
NdeII	GATC	2 cut(s)	163, 294
NlaIII	CATG	5 cut(s)	183, 504, 508, 662, 758
NlaIV	GGNNCC	4 cut(s)	81, 165, 205, 717
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	2 cut(s)	88, 457
NsiI	ATGCAT	1 cut(s)	506
NspI	RCATGY	1 cut(s)	504
PaeI	GCATGC	1 cut(s)	504
PaqCI	CACCTGC	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	176, 795
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	7 cut(s)	262, 484, 487, 490, 493, 511, 549
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	338, 516
PspGI	CCWGG	2 cut(s)	338, 516
PspN4I	GGNNCC	4 cut(s)	81, 165, 205, 717
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	2 cut(s)	136, 488
RsaI	GTAC	2 cut(s)	55, 218
RsaNI	GTAC	2 cut(s)	54, 217
RseI	CAYNNNNRTG	1 cut(s)	519
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	71, 417, 732
SatI	GCNGC	7 cut(s)	261, 483, 486, 489, 492, 510, 548
Sau3AI	GATC	2 cut(s)	163, 294
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	340, 518
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	3 cut(s)	10, 483, 511
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	504
Sse9I	AATT	6 cut(s)	58, 281, 465, 563, 625, 636
SsiI	CCGC	3 cut(s)	128, 261, 482
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	2 cut(s)	236, 593
StyD4I	CCNGG	2 cut(s)	338, 516
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	750
TaqII	GACCGA	1 cut(s)	786
TasI	AATT	6 cut(s)	58, 281, 465, 563, 625, 636
TauI	GCSGC	2 cut(s)	263, 485
TfiI	GAWTC	2 cut(s)	176, 795
Tru1I	TTAA	3 cut(s)	71, 417, 732
Tru9I	TTAA	3 cut(s)	71, 417, 732
TseFI	GTSAC	2 cut(s)	88, 457
TseI	GCWGC	5 cut(s)	485, 488, 491, 509, 547
Tsp45I	GTSAC	2 cut(s)	88, 457
TspDTI	ATGAA	4 cut(s)	189, 546, 601, 736
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XspI	CTAG	2 cut(s)	236, 593
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.