Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

20777595 .. 20782438

Gene Structure 4844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG207400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGTTTTGCTGCTATCGGCACGGGAATTGCTGGTTTGGCTGATCAGATTCCTAATCCAGCCAGTTTTGTCAATCTGGTTCCGACCAGATTCGATGTTCAATGGCTTGGTCTTACACTTGAAGTTGTTCGGTGTGGTGGCTGTCCCGGCGTTGGGTGGCGGTGCAGCCCTTGGTACAGAGCTGCTAGGTCAAGATTGTGCAGCTCCAAGATTGGCTGGGCCTTTTGGGCTTGCTCACTCATTTTGGGTCTGGGATGAGGTCTTCGGGCCTTATCTTGGGCCTCATGAGGAGTGGCTGTATCGGTGCGTGTACGTGATTTTCGTCGCGGCTGTTCTGGTGGCGTCCTCAGCCGAGATTTTTACTGATCCGATTGACCTCGTAGCTCTTCAAGATCTTTACAAGACCCTCAACCAACCGCCACAGCTGACGGGTTGGAGATTGGATGGTGGGGATCCTTGCTTAGAATGGCGTGGTGTCTCCTGCATTTACAATGGAGTTGTATACCTGTACCTTAGAGGTCTGAATCTGACTGGGTACATCAGTCCCAAGATCAGATATCTTTACAATTTGCAGCTATTTGATATTAGTTCCAATACCATTGGTGGTGAAATTCCACTTGTCTTACCCCCCAATGCGACTGATATAAATATGGCAGACAACTATTTGAGCCACAATATTCCCCCATGCTTACATGGCATGAAAAGTCTCCGACATTTGAATCTGAGCCGCAATTTGTTATCCGGACCCATTGGCAATGTTTTTACCGGCCTACAGAATTTAAAAGAAATGGATTTGTCATATAATAACTTTACTGGAGATCTTCCAAGTTCATTTGAATCCCTCACAAAACTCACTGGACTGTACTTGCAGAATAACCAATTGACTGGATCAGTTGCTTACCTAGCTAAACTTCCACTAATTGATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

309

Amino Acids

34.21

Weight (kDa)

5.46

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	125 - 161	6.6e-07	Leucine rich repeat N-terminal domain
LRR_8	PF13855	253 - 294	4.8e-09	Leucine rich repeat
LRR_4	PF12799	258 - 295	1.7e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	1 cut(s)	326
AccIII	TCCGGA	1 cut(s)	740
AciI	CCGC	4 cut(s)	159, 326, 416, 727
AclWI	GGATC	4 cut(s)	359, 446, 459, 895
AcsI	RAATTY	2 cut(s)	609, 775
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	5 cut(s)	175, 311, 509, 536, 863
AfiI	CCNNNNNNNGG	3 cut(s)	151, 152, 275
AgsI	TTSAA	5 cut(s)	100, 121, 389, 718, 836
AluBI	AGCT	6 cut(s)	181, 203, 383, 424, 574, 905
AluI	AGCT	6 cut(s)	181, 203, 383, 424, 574, 905
Alw26I	GTCTC	2 cut(s)	481, 710
AlwI	GGATC	4 cut(s)	359, 446, 459, 895
Aor13HI	TCCGGA	1 cut(s)	740
AoxI	GGCC	4 cut(s)	218, 266, 278, 766
ApeKI	GCWGC	5 cut(s)	10, 164, 181, 200, 571
ApoI	RAATTY	2 cut(s)	609, 775
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	4 cut(s)	218, 266, 278, 743
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	743
BaeI	ACNNNNGTAYC	2 cut(s)	526, 559
BamHI	GGATCC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	253
BbvCI	CCTCAGC	1 cut(s)	346
BbvI	GCAGC	4 cut(s)	168, 176, 212, 583
BccI	CCATC	1 cut(s)	437
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	481, 710
BfaI	CTAG	2 cut(s)	185, 902
BfmI	CTRYAG	2 cut(s)	770, 926
BglI	GCCNNNNNGGC	1 cut(s)	226
BglII	AGATCT	2 cut(s)	391, 817
BisI	GCNGC	7 cut(s)	11, 165, 182, 201, 327, 572, 727
BlsI	GCNGC	7 cut(s)	12, 166, 183, 202, 328, 573, 728
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	4 cut(s)	218, 266, 278, 743
BmiI	GGNNCC	3 cut(s)	80, 453, 745
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	740
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 152, 275
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	5 cut(s)	62, 535, 817, 859, 889
Bse3DI	GCAATG	1 cut(s)	760
BseAI	TCCGGA	1 cut(s)	740
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	259, 448
BseLI	CCNNNNNNNGG	3 cut(s)	151, 152, 275
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	2 cut(s)	360, 713
BseNI	ACTGG	5 cut(s)	62, 535, 817, 859, 889
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	4 cut(s)	168, 176, 212, 583
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	2 cut(s)	183, 219
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	4 cut(s)	220, 268, 280, 768
BsiSI	CCGG	3 cut(s)	146, 741, 765
BslFI	GGGAC	2 cut(s)	128, 528
BslI	CCNNNNNNNGG	3 cut(s)	151, 152, 275
BsmAI	GTCTC	2 cut(s)	481, 710
BsmFI	GGGAC	2 cut(s)	128, 528
BsnI	GGCC	4 cut(s)	220, 268, 280, 768
Bsp13I	TCCGGA	1 cut(s)	740
Bsp143I	GATC	8 cut(s)	42, 364, 391, 451, 549, 817, 887, 922
BspACI	CCGC	4 cut(s)	159, 326, 416, 727
BspANI	GGCC	4 cut(s)	220, 268, 280, 768
BspCNI	CTCAG	2 cut(s)	359, 714
BspEI	TCCGGA	1 cut(s)	740
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	80, 453, 745
BspPI	GGATC	4 cut(s)	359, 446, 459, 895
BspQI	GCTCTTC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	5 cut(s)	62, 535, 817, 859, 889
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	8 cut(s)	42, 364, 391, 451, 549, 817, 887, 922
BssNAI	GTATAC	1 cut(s)	502
BssNI	GRCGYC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	169
Bst1107I	GTATAC	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	861
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	4 cut(s)	346, 460, 512, 722
BstF5I	GGATG	2 cut(s)	259, 448
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	8 cut(s)	45, 367, 394, 454, 552, 820, 890, 925
BstMAI	GTCTC	2 cut(s)	481, 710
BstMBI	GATC	8 cut(s)	42, 364, 391, 451, 549, 817, 887, 922
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 146, 226, 347, 693, 902
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	2 cut(s)	770, 926
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	4 cut(s)	168, 176, 212, 583
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	3 cut(s)	391, 451, 817
BstXI	CCANNNNNNTGG	1 cut(s)	884
BstYI	RGATCY	3 cut(s)	391, 451, 817
BstZ17I	GTATAC	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	220, 268, 280, 768
BtsCI	GGATG	2 cut(s)	259, 448
BtsIMutI	CAGTG	1 cut(s)	852
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	4 cut(s)	218, 266, 278, 743
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	5 cut(s)	174, 310, 508, 535, 862
CviAII	CATG	4 cut(s)	284, 684, 692, 697
CviQI	GTAC	5 cut(s)	174, 310, 508, 535, 862
DdeI	CTNAG	4 cut(s)	346, 460, 512, 722
DpnI	GATC	8 cut(s)	44, 366, 393, 453, 551, 819, 889, 924
DpnII	GATC	8 cut(s)	42, 364, 391, 451, 549, 817, 887, 922
DraI	TTTAAA	1 cut(s)	780
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	743
EcoRV	GATATC	1 cut(s)	557
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	4 cut(s)	287, 687, 695, 700
FaiI	YATR	9 cut(s)	285, 502, 644, 650, 685, 693, 698, 799, 801
FaqI	GGGAC	2 cut(s)	128, 528
FatI	CATG	4 cut(s)	283, 683, 691, 696
FbaI	TGATCA	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	7 cut(s)	11, 165, 182, 201, 327, 572, 727
FokI	GGATG	2 cut(s)	266, 455
Fsp4HI	GCNGC	7 cut(s)	11, 165, 182, 201, 327, 572, 727
FspBI	CTAG	2 cut(s)	185, 902
GluI	GCNGC	7 cut(s)	11, 165, 182, 201, 327, 572, 727
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	4 cut(s)	220, 268, 280, 768
HapII	CCGG	3 cut(s)	146, 741, 765
HgaI	GACGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	287, 687, 695, 700
HinfI	GANTC	5 cut(s)	48, 89, 523, 718, 836
HpaII	CCGG	3 cut(s)	146, 741, 765
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	2 cut(s)	310, 502
Hpy188I	TCNGA	8 cut(s)	47, 83, 369, 522, 528, 554, 710, 723
Hpy188III	TCNNGA	4 cut(s)	191, 284, 389, 741
Hpy8I	GTNNAC	2 cut(s)	310, 502
Hpy99I	CGWCG	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	861
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	164, 200, 483, 571, 868
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 146, 226, 347, 693, 902
HpyF3I	CTNAG	4 cut(s)	346, 460, 512, 722
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	287, 687, 695, 700
Kpn2I	TCCGGA	1 cut(s)	740
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	8 cut(s)	42, 364, 391, 451, 549, 817, 887, 922
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	4 cut(s)	168, 176, 212, 583
MaeI	CTAG	2 cut(s)	185, 902
MaeII	ACGT	1 cut(s)	312
MalI	GATC	8 cut(s)	44, 366, 393, 453, 551, 819, 889, 924
MboI	GATC	8 cut(s)	42, 364, 391, 451, 549, 817, 887, 922
MboII	GAAGA	3 cut(s)	253, 377, 812
MfeI	CAATTG	1 cut(s)	878
MflI	RGATCY	3 cut(s)	391, 451, 817
MluCI	AATT	7 cut(s)	26, 565, 609, 730, 775, 878, 918
MmeI	TCCRAC	3 cut(s)	106, 413, 733
MnlI	CCTC	8 cut(s)	250, 280, 291, 355, 386, 416, 509, 851
MroI	TCCGGA	1 cut(s)	740
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	779
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	3 cut(s)	146, 741, 765
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	878
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	6 cut(s)	37, 146, 226, 347, 693, 902
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	8 cut(s)	42, 364, 391, 451, 549, 817, 887, 922
NlaIII	CATG	4 cut(s)	287, 687, 695, 700
NlaIV	GGNNCC	3 cut(s)	80, 453, 745
NmeAIII	GCCGAG	1 cut(s)	376
PagI	TCATGA	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	5 cut(s)	48, 89, 523, 718, 836
PkrI	GCNGC	7 cut(s)	12, 166, 183, 202, 328, 573, 728
Ppu21I	YACGTR	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	80, 453, 745
PspPI	GGNCC	4 cut(s)	218, 266, 278, 743
PsuI	RGATCY	3 cut(s)	391, 451, 817
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	5 cut(s)	175, 311, 509, 536, 863
RsaNI	GTAC	5 cut(s)	174, 310, 508, 535, 862
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	779
SatI	GCNGC	7 cut(s)	11, 165, 182, 201, 327, 572, 727
Sau3AI	GATC	8 cut(s)	42, 364, 391, 451, 549, 817, 887, 922
Sau96I	GGNCC	4 cut(s)	218, 266, 278, 743
ScrFI	CCNGG	1 cut(s)	146
SfcI	CTRYAG	2 cut(s)	770, 926
SinI	GGWCC	1 cut(s)	743
Sse9I	AATT	7 cut(s)	26, 565, 609, 730, 775, 878, 918
SsiI	CCGC	4 cut(s)	159, 326, 416, 727
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	2 cut(s)	185, 902
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	861
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	92
TasI	AATT	7 cut(s)	26, 565, 609, 730, 775, 878, 918
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	2 cut(s)	329, 729
TfiI	GAWTC	5 cut(s)	48, 89, 523, 718, 836
Tru1I	TTAA	1 cut(s)	779
Tru9I	TTAA	1 cut(s)	779
TscAI	CASTG	1 cut(s)	859
TseI	GCWGC	5 cut(s)	10, 164, 181, 200, 571
TspDTI	ATGAA	2 cut(s)	713, 819
TspRI	CASTG	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	2 cut(s)	609, 775
XmiI	GTMKAC	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	185, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.