Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

76701891 .. 76704681

Gene Structure 2791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG539100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGACGCAATACGTGGTTTTCACAGTGCTTGTCTTGGCGGTGGTTATGGCTTCTCAGTCTGAGGCTTTTACTGATCCACTTGACGTCACAGCTCTTCAAGAGCTTTACAAGTCCCTTAACACACCGCCACAGCTGACCGGTTGGGGATTGGATGGTGGGGATCCTTGCGATGAATCATGGAATGGAGTGTCCTGTTTTGGCTCCTCTGGGAACAACTGTCCACCCTGGGATGTTCCTCTGGAAACCAAGGCAAGGGACTCAGAACAAAACACCTATCTCCCTCCAGCAACTCAGTCAAGTGTTAAGAACTCAGGACACAAGAATAAGAAGCTTGGAATATTCGTCACTATAATTGGTTGCATCGTGGCGGCAGCTGCAGCCATAGCATGCATGGCAGCCCGCCAGGATGCAAACAATGAACCACCACCTGAGCAGCCCGCTCGGCTTCAATTTTCTCCCCCGAGGCCACCTGAGAGGCTAGAACTTGATGGAAGGTTCATTGCAGGACAGAATTACGAAATAATTGTTGCTGGTAAAGCCTATCATGCTGATACAGAAGAAAAAGTAGTGAAGAAAGCAAAGAAAGACCAAGAGCCAGAGGAACCCCAAGTTAAACTTGACACTTTCATCGACCATGTTGAGGAAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

23.76

Weight (kDa)

4.64

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 66	9.5e-09	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	443
AciI	CCGC	5 cut(s)	41, 128, 371, 403, 441
AclWI	GGATC	3 cut(s)	71, 158, 171
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	255, 643
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	101, 452
AjnI	CCWGG	2 cut(s)	227, 405
AluBI	AGCT	5 cut(s)	95, 106, 136, 334, 377
AluI	AGCT	5 cut(s)	95, 106, 136, 334, 377
AlwI	GGATC	3 cut(s)	71, 158, 171
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	5 cut(s)	374, 377, 380, 398, 436
AsiGI	ACCGGT	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	163
BbvI	GCAGC	5 cut(s)	364, 386, 392, 410, 448
BccI	CCATC	2 cut(s)	149, 485
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	2 cut(s)	229, 407
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	378
BglI	GCCNNNNNGGC	1 cut(s)	445
BisI	GCNGC	6 cut(s)	372, 375, 378, 381, 399, 437
BlsI	GCNGC	6 cut(s)	373, 376, 379, 382, 400, 438
Bme1390I	CCNGG	2 cut(s)	229, 407
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	3 cut(s)	165, 205, 606
BmrFI	CCNGG	2 cut(s)	229, 407
BmsI	GCATC	2 cut(s)	372, 400
BpmI	CTGGAG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	227, 228, 249, 464
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 643
Bse118I	RCCGGY	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	229, 407
BseDI	CCNNGG	4 cut(s)	227, 228, 249, 464
BseGI	GGATG	3 cut(s)	160, 238, 415
BseLI	CCNNNNNNNGG	2 cut(s)	255, 643
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	7 cut(s)	54, 71, 276, 308, 327, 423, 465
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	5 cut(s)	364, 386, 392, 410, 448
BshFI	GGCC	1 cut(s)	469
BshTI	ACCGGT	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	100, 272
BslI	CCNNNNNNNGG	2 cut(s)	255, 643
BsmFI	GGGAC	2 cut(s)	100, 272
BsnI	GGCC	1 cut(s)	469
BsoBI	CYCGRG	1 cut(s)	463
Bsp143I	GATC	2 cut(s)	76, 163
BspACI	CCGC	5 cut(s)	41, 128, 371, 403, 441
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	7 cut(s)	55, 70, 275, 307, 326, 424, 466
BspLI	GGNNCC	3 cut(s)	165, 205, 606
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	3 cut(s)	71, 158, 171
BspQI	GCTCTTC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	4 cut(s)	227, 228, 249, 464
BssMI	GATC	2 cut(s)	76, 163
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	229, 407
Bst4CI	ACNGT	2 cut(s)	28, 221
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	391, 403, 441
BstDEI	CTNAG	7 cut(s)	57, 63, 262, 294, 313, 432, 474
BstF5I	GGATG	3 cut(s)	160, 238, 415
BstKTI	GATC	2 cut(s)	79, 166
BstMBI	GATC	2 cut(s)	76, 163
BstMWI	GCNNNNNNNGC	7 cut(s)	377, 380, 386, 395, 445, 539, 548
BstNI	CCWGG	2 cut(s)	229, 407
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	227, 405
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	364, 386, 392, 410, 448
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	469
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	160, 238, 415
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	391, 403, 441
Cfr10I	RCCGGY	1 cut(s)	140
CseI	GACGC	1 cut(s)	16
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	5 cut(s)	180, 390, 394, 548, 638
DdeI	CTNAG	7 cut(s)	57, 63, 262, 294, 313, 432, 474
DpnI	GATC	2 cut(s)	78, 165
DpnII	GATC	2 cut(s)	76, 163
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	227, 405
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	183, 393, 397, 551, 641
FaiI	YATR	8 cut(s)	50, 181, 353, 386, 391, 395, 549, 639
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	2 cut(s)	100, 272
FatI	CATG	5 cut(s)	179, 389, 393, 547, 637
FauI	CCCGC	2 cut(s)	410, 448
Fnu4HI	GCNGC	6 cut(s)	372, 375, 378, 381, 399, 437
FokI	GGATG	3 cut(s)	167, 245, 422
Fsp4HI	GCNGC	6 cut(s)	372, 375, 378, 381, 399, 437
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	6 cut(s)	372, 375, 378, 381, 399, 437
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	469
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	5 cut(s)	183, 393, 397, 551, 641
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	176, 260
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	64, 265
Hpy188III	TCNNGA	3 cut(s)	101, 242, 315
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	2 cut(s)	28, 221
HpyCH4IV	ACGT	2 cut(s)	15, 87
HpyCH4V	TGCA	5 cut(s)	363, 380, 393, 413, 506
HpyF10VI	GCNNNNNNNGC	7 cut(s)	377, 380, 386, 395, 445, 539, 548
HpyF3I	CTNAG	7 cut(s)	57, 63, 262, 294, 313, 432, 474
HpySE526I	ACGT	2 cut(s)	15, 87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	5 cut(s)	183, 393, 397, 551, 641
Kzo9I	GATC	2 cut(s)	76, 163
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	5 cut(s)	364, 386, 392, 410, 448
LweI	GCATC	2 cut(s)	372, 400
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	15, 87
MaeIII	GTNAC	2 cut(s)	88, 346
MalI	GATC	2 cut(s)	78, 165
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	2 cut(s)	76, 163
MboII	GAAGA	3 cut(s)	89, 572, 586
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	4 cut(s)	354, 452, 514, 525
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	58, 217, 249, 294, 459, 471, 595, 637
Mph1103I	ATGCAT	1 cut(s)	395
MseI	TTAA	3 cut(s)	120, 306, 615
MspA1I	CMGCKG	2 cut(s)	136, 377
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	229, 407
MvaI	CCWGG	2 cut(s)	229, 407
MwoI	GCNNNNNNNGC	7 cut(s)	377, 380, 386, 395, 445, 539, 548
NdeII	GATC	2 cut(s)	76, 163
NlaIII	CATG	5 cut(s)	183, 393, 397, 551, 641
NlaIV	GGNNCC	3 cut(s)	165, 205, 606
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	2 cut(s)	88, 346
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	1 cut(s)	393
PaeI	GCATGC	1 cut(s)	393
PasI	CCCWGGG	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	176
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	6 cut(s)	373, 376, 379, 382, 400, 438
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	227, 405
PspGI	CCWGG	2 cut(s)	227, 405
PspN4I	GGNNCC	3 cut(s)	165, 205, 606
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	2 cut(s)	136, 377
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	120, 306, 615
SatI	GCNGC	6 cut(s)	372, 375, 378, 381, 399, 437
Sau3AI	GATC	2 cut(s)	76, 163
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	229, 407
SfaNI	GCATC	2 cut(s)	372, 400
SfcI	CTRYAG	1 cut(s)	378
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	4 cut(s)	354, 452, 514, 525
SsiI	CCGC	5 cut(s)	41, 128, 371, 403, 441
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	227, 405
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	28, 221
TaiI	ACGT	2 cut(s)	18, 90
TaqI	TCGA	1 cut(s)	633
TasI	AATT	4 cut(s)	354, 452, 514, 525
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	120, 306, 615
Tru9I	TTAA	3 cut(s)	120, 306, 615
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	2 cut(s)	88, 346
TseI	GCWGC	5 cut(s)	374, 377, 380, 398, 436
Tsp45I	GTSAC	2 cut(s)	88, 346
TspDTI	ATGAA	4 cut(s)	189, 435, 490, 619
TspRI	CASTG	1 cut(s)	33
XceI	RCATGY	1 cut(s)	393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XspI	CTAG	1 cut(s)	482
ZraI	GACGTC	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.