Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

48015734 .. 48016240

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCAATTCCCTACCGAGAATCAAACTAAATACCGTGGCGAGCTTCGGTCAGCTACGAACAGCTTTGCGGAAGAAAATTTGCTGGGCCAAGGATCTCTTGCTTCTATTTACAAAGCCGAGTTTCATGATGGCCAAATTTTGGCTGTAAAGAACATCAAGATGTCCGATCTCTCTTTCCATGAAGAAGAACAATTCCTGGACGTCATTTCCATTATTTCTCAGTTGAAGCACCCGAACAATGTACCACTTGTTAGCTATTGTGTGAAGCGTAGACAACATCTTCTTGTGTATGAATATGTTGGAAATTTATCCCTTGATGAGGCACTTCACAGTGATGCATACAAGCCTCTATCCCGGGCCATCCATCTCCAAATTGGTCTTGCTGTTGCTCAAGCTTTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

6.28

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 128	1.9e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 133	7.4e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	271
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	3 cut(s)	76, 135, 304
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	139, 319
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	5 cut(s)	43, 53, 63, 255, 395
AluI	AGCT	5 cut(s)	43, 53, 63, 255, 395
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	3 cut(s)	85, 130, 357
ApoI	RAATTY	3 cut(s)	76, 135, 304
AspS9I	GGNCC	2 cut(s)	85, 357
AsuC2I	CCSGG	2 cut(s)	355, 356
AvaI	CYCGRG	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	132
BccI	CCATC	3 cut(s)	122, 368, 372
BciT130I	CCWGG	1 cut(s)	197
BcnI	CCSGG	2 cut(s)	355, 356
Bme1390I	CCNGG	3 cut(s)	197, 355, 356
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	85, 357
BmrFI	CCNGG	3 cut(s)	197, 355, 356
BmsI	GCATC	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	2 cut(s)	355, 356
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	34, 88, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 319
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	34, 88, 354
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	139, 319
BseMII	CTCAG	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	82
BshFI	GGCC	3 cut(s)	87, 132, 359
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	139, 319
BsnI	GGCC	3 cut(s)	87, 132, 359
BsoBI	CYCGRG	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	92, 166
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	3 cut(s)	87, 132, 359
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	124
BspPI	GGATC	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	34, 88, 354
BssMI	GATC	2 cut(s)	92, 166
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	35, 332
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	2 cut(s)	95, 169
BstMBI	GATC	2 cut(s)	92, 166
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	195, 353, 354
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	87, 132, 359
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	41
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	85, 357
Cfr9I	CCCGGG	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	125, 179
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	94, 168
DpnII	GATC	2 cut(s)	92, 166
DraI	TTTAAA	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	128, 182
FaiI	YATR	5 cut(s)	126, 180, 291, 297, 340
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FatI	CATG	2 cut(s)	124, 178
FblI	GTMKAC	1 cut(s)	271
FokI	GGATG	1 cut(s)	347
GsaI	CCCAGC	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	87, 132, 359
HapII	CCGG	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	128, 182
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	125, 157
Hpy8I	GTNNAC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	35, 332
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	4, 338
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	128, 182
Kzo9I	GATC	2 cut(s)	92, 166
LpnPI	CCDG	4 cut(s)	68, 182, 209, 368
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	1 cut(s)	201
MalI	GATC	2 cut(s)	94, 168
MboI	GATC	2 cut(s)	92, 166
MboII	GAAGA	4 cut(s)	83, 194, 197, 272
MflI	RGATCY	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	6 cut(s)	5, 76, 135, 191, 304, 372
MluNI	TGGCCA	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	2 cut(s)	313, 357
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	2 cut(s)	158, 333
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	3 cut(s)	197, 355, 356
MvaI	CCWGG	1 cut(s)	197
NciI	CCSGG	2 cut(s)	355, 356
NdeII	GATC	2 cut(s)	92, 166
NlaIII	CATG	2 cut(s)	128, 182
NmeAIII	GCCGAG	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	340
PagI	TCATGA	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	85, 357
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	158, 333
SaqAI	TTAA	1 cut(s)	398
Sau3AI	GATC	2 cut(s)	92, 166
Sau96I	GGNCC	2 cut(s)	85, 357
ScrFI	CCNGG	3 cut(s)	197, 355, 356
SetI	ASST	6 cut(s)	45, 55, 65, 204, 257, 397
SfaNI	GCATC	1 cut(s)	325
SmaI	CCCGGG	1 cut(s)	356
SmiMI	CAYNNNNRTG	2 cut(s)	158, 333
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	6 cut(s)	5, 76, 135, 191, 304, 372
SsiI	CCGC	1 cut(s)	68
StyD4I	CCNGG	3 cut(s)	195, 353, 354
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	35, 332
TaiI	ACGT	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	6 cut(s)	5, 76, 135, 191, 304, 372
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	1 cut(s)	337
TspDTI	ATGAA	3 cut(s)	113, 195, 306
TspMI	CCCGGG	1 cut(s)	354
TspRI	CASTG	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	139
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	3 cut(s)	76, 135, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmaI	CCCGGG	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	271
ZraI	GACGTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.