Rh3CG188100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000664
Physical Location & Seq
Forward (+)
16531960 .. 16541262
9303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG188100.1

Sequence Viewer

Length: 828 bp
ATGGCATGCAATTCCCTTACCAATAGTATTCCGCAATGTTTAGGTGGCATGAAACATCTTCAATACTTAAATCTGAGCCACAATACGTTATCTGGAGCCTTAGGCAACATTTTTACTGGCCTCAAGAATTTAAGACAACTGGATTTGTCCTATAATAACTTTACCGCTCTGCCAAGTTCGTTTGGATCCCTCACAAATCTCAATGGATTGTACTTGCACGATAACCGTTTGACTGGATCACTTACTTCTCGGTCCAGTGCTGACAAGAAATGGCTTGTCGTTGTCTGGATAAGCTTTGTAGTCGTTGCAGCTGTGTTTGCTTGTTGTATGGCATCATACCATTGTACTGCTCAACCAGGTCAACACCGCATTGGTGCTGCTGCTCAACCTGATCAGAACGACAGCATTCCCGCCGTTGCTCAACCAGGGCAGCAAGCTGCCATTGCTGCTGCTGCTCAACCAGGCCAACAACCTGCCGTTGCTACTGTTGCTCAGCCAGGCCAACAAGCCCCCATTGCTGGTTCTGCTCAATCCCCCTTCATTGTTTCCCCTGATCCTGATGTCTTACCTGCCACTTACATCTCCTCAAAGAAGAAACGGAAAATATCCTTTGGAACATTTGAAGGTGGTACGTGGCAGATTTCCGATGGAATTAGATATCATACTGCAGATTCTTGTGAGAAAGTGATAAAACTGGCATCTCCTGCTCCGAGGGTTGAGCAGCCAAGGAGAAAGATGAGTTTCATAAACCAAGACAATGAAGTACAAGAGTATGCAATGGTAGATGATGATGATGATGAAGAATGTAAGAAAAAGACACTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

29.62

Weight (kDa)

7.6

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 54 5e-10 Leucine rich repeat
LRR_14 PF23598 3 - 77 1.1e-07 Leucine-rich repeat region
LRR_8 PF13855 37 - 77 1.7e-07 Leucine rich repeat
LRR_4 PF12799 42 - 78 9.6e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06820
fragaria_vesca FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis pycom14g04900
rosa_chinensis RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 481, 577
AccBSI CCGCTC 1 cut(s) 167
AciI CCGC 4 cut(s) 32, 165, 367, 411
AclWI GGATC 4 cut(s) 180, 193, 244, 548
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 4 cut(s) 212, 346, 631, 765
AfiI CCNNNNNNNGG 1 cut(s) 518
AgsI TTSAA 2 cut(s) 62, 623
AjnI CCWGG 4 cut(s) 355, 424, 460, 496
AluBI AGCT 3 cut(s) 294, 311, 437
AluI AGCT 3 cut(s) 294, 311, 437
AlwI GGATC 4 cut(s) 180, 193, 244, 548
AoxI GGCC 3 cut(s) 118, 463, 499
ApeKI GCWGC 9 cut(s) 308, 377, 380, 430, 437, 446, 449, 452, 721
ApoI RAATTY 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 252
AvaII GGWCC 1 cut(s) 252
AxyI CCTNAGG 1 cut(s) 100
BamHI GGATCC 1 cut(s) 185
BbvI GCAGC 9 cut(s) 320, 364, 367, 424, 433, 436, 439, 442, 733
BccI CCATC 1 cut(s) 641
BceAI ACGGC 2 cut(s) 398, 461
BciT130I CCWGG 4 cut(s) 357, 426, 462, 498
BclI TGATCA 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 666
BfuAI ACCTGC 2 cut(s) 481, 577
BisI GCNGC 9 cut(s) 309, 378, 381, 431, 438, 447, 450, 453, 722
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 9 cut(s) 310, 379, 382, 432, 439, 448, 451, 454, 723
Bme1390I CCNGG 4 cut(s) 357, 426, 462, 498
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 97, 187
BmrFI CCNGG 4 cut(s) 357, 426, 462, 498
BmsI GCATC 2 cut(s) 341, 707
BpmI CTGGAG 2 cut(s) 114, 806
Bpu1102I GCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 425, 710, 725
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse1I ACTGG 6 cut(s) 121, 144, 238, 255, 699, 823
Bse21I CCTNAGG 1 cut(s) 100
Bse3DI GCAATG 4 cut(s) 41, 441, 513, 783
BseBI CCWGG 4 cut(s) 357, 426, 462, 498
BseDI CCNNGG 3 cut(s) 425, 710, 725
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMI GCAATG 4 cut(s) 41, 441, 513, 783
BseMII CTCAG 2 cut(s) 65, 506
BseNI ACTGG 6 cut(s) 121, 144, 238, 255, 699, 823
BseRI GAGGAG 1 cut(s) 574
BseXI GCAGC 9 cut(s) 320, 364, 367, 424, 433, 436, 439, 442, 733
BshFI GGCC 3 cut(s) 120, 465, 501
BslI CCNNNNNNNGG 1 cut(s) 518
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 3 cut(s) 120, 465, 501
Bsp143I GATC 4 cut(s) 185, 236, 391, 553
Bsp1720I GCTNAGC 1 cut(s) 492
BspACI CCGC 4 cut(s) 32, 165, 367, 411
BspANI GGCC 3 cut(s) 120, 465, 501
BspCNI CTCAG 2 cut(s) 66, 505
BspLI GGNNCC 2 cut(s) 97, 187
BspMAI CTGCAG 1 cut(s) 670
BspMI ACCTGC 2 cut(s) 481, 577
BspPI GGATC 4 cut(s) 180, 193, 244, 548
BsrBI CCGCTC 1 cut(s) 167
BsrDI GCAATG 4 cut(s) 41, 441, 513, 783
BsrI ACTGG 6 cut(s) 121, 144, 238, 255, 699, 823
BssECI CCNNGG 3 cut(s) 425, 710, 725
BssMI GATC 4 cut(s) 185, 236, 391, 553
BssT1I CCWWGG 1 cut(s) 725
Bst2UI CCWGG 4 cut(s) 357, 426, 462, 498
Bst4CI ACNGT 2 cut(s) 227, 487
BstAPI GCANNNNNTGC 1 cut(s) 704
BstBAI YACGTR 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 7, 435
BstDEI CTNAG 3 cut(s) 74, 100, 492
BstKTI GATC 4 cut(s) 188, 239, 394, 556
BstMBI GATC 4 cut(s) 185, 236, 391, 553
BstMWI GCNNNNNNNGC 8 cut(s) 317, 443, 446, 452, 488, 515, 524, 704
BstNI CCWGG 4 cut(s) 357, 426, 462, 498
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 4 cut(s) 355, 424, 460, 496
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 9 cut(s) 320, 364, 367, 424, 433, 436, 439, 442, 733
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
Bsu36I CCTNAGG 1 cut(s) 100
BsuRI GGCC 3 cut(s) 120, 465, 501
BtsIMutI CAGTG 1 cut(s) 262
BveI ACCTGC 2 cut(s) 481, 577
Cac8I GCNNGC 2 cut(s) 7, 435
Cfr13I GGNCC 1 cut(s) 252
CsiI ACCWGGT 1 cut(s) 355
Csp6I GTAC 4 cut(s) 211, 345, 630, 764
CviAII CATG 2 cut(s) 6, 49
CviQI GTAC 4 cut(s) 211, 345, 630, 764
DdeI CTNAG 3 cut(s) 74, 100, 492
DpnI GATC 4 cut(s) 187, 238, 393, 555
DpnII GATC 4 cut(s) 185, 236, 391, 553
Eco130I CCWWGG 1 cut(s) 725
Eco32I GATATC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 100
EcoRII CCWGG 4 cut(s) 355, 424, 460, 496
EcoRV GATATC 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 2 cut(s) 9, 52
FaiI YATR 8 cut(s) 7, 50, 153, 329, 337, 663, 746, 774
FatI CATG 2 cut(s) 5, 48
FauI CCCGC 1 cut(s) 418
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 9 cut(s) 309, 378, 381, 431, 438, 447, 450, 453, 722
Fsp4HI GCNGC 9 cut(s) 309, 378, 381, 431, 438, 447, 450, 453, 722
GluI GCNGC 9 cut(s) 309, 378, 381, 431, 438, 447, 450, 453, 722
GsuI CTGGAG 2 cut(s) 114, 806
HaeIII GGCC 3 cut(s) 120, 465, 501
Hin1II CATG 2 cut(s) 9, 52
HincII GTYRAC 1 cut(s) 362
HindII GTYRAC 1 cut(s) 362
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 1 cut(s) 671
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 4 cut(s) 75, 396, 646, 711
Hpy188III TCNNGA 4 cut(s) 93, 124, 286, 557
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 2 cut(s) 547, 617
HpyCH4III ACNGT 2 cut(s) 227, 487
HpyCH4IV ACGT 2 cut(s) 86, 632
HpyCH4V TGCA 5 cut(s) 9, 217, 308, 668, 776
HpyF10VI GCNNNNNNNGC 8 cut(s) 317, 443, 446, 452, 488, 515, 524, 704
HpyF3I CTNAG 3 cut(s) 74, 100, 492
HpySE526I ACGT 2 cut(s) 86, 632
Hsp92II CATG 2 cut(s) 9, 52
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 4 cut(s) 185, 236, 391, 553
LmnI GCTCC 2 cut(s) 95, 712
Lsp1109I GCAGC 9 cut(s) 320, 364, 367, 424, 433, 436, 439, 442, 733
LweI GCATC 2 cut(s) 341, 707
MabI ACCWGGT 1 cut(s) 355
MaeII ACGT 2 cut(s) 86, 632
MalI GATC 4 cut(s) 187, 238, 393, 555
MbiI CCGCTC 1 cut(s) 167
MboI GATC 4 cut(s) 185, 236, 391, 553
MboII GAAGA 3 cut(s) 50, 604, 812
MflI RGATCY 1 cut(s) 185
MluCI AATT 3 cut(s) 10, 127, 651
MnlI CCTC 4 cut(s) 131, 200, 595, 705
MseI TTAA 2 cut(s) 68, 131
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 4 cut(s) 357, 426, 462, 498
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 4 cut(s) 357, 426, 462, 498
MwoI GCNNNNNNNGC 8 cut(s) 317, 443, 446, 452, 488, 515, 524, 704
NdeII GATC 4 cut(s) 185, 236, 391, 553
NlaIII CATG 2 cut(s) 9, 52
NlaIV GGNNCC 2 cut(s) 97, 187
NspI RCATGY 1 cut(s) 9
PaeI GCATGC 1 cut(s) 9
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 671
PkrI GCNGC 9 cut(s) 310, 379, 382, 432, 439, 448, 451, 454, 723
Ppu21I YACGTR 1 cut(s) 633
Psp6I CCWGG 4 cut(s) 355, 424, 460, 496
PspGI CCWGG 4 cut(s) 355, 424, 460, 496
PspN4I GGNNCC 2 cut(s) 97, 187
PspPI GGNCC 1 cut(s) 252
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 4 cut(s) 212, 346, 631, 765
RsaNI GTAC 4 cut(s) 211, 345, 630, 764
SaqAI TTAA 2 cut(s) 68, 131
SatI GCNGC 9 cut(s) 309, 378, 381, 431, 438, 447, 450, 453, 722
Sau3AI GATC 4 cut(s) 185, 236, 391, 553
Sau96I GGNCC 1 cut(s) 252
ScrFI CCNGG 4 cut(s) 357, 426, 462, 498
SexAI ACCWGGT 1 cut(s) 355
SfaNI GCATC 2 cut(s) 341, 707
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SphI GCATGC 1 cut(s) 9
Sse9I AATT 3 cut(s) 10, 127, 651
SsiI CCGC 4 cut(s) 32, 165, 367, 411
StyD4I CCNGG 4 cut(s) 355, 424, 460, 496
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 2 cut(s) 227, 487
TaiI ACGT 2 cut(s) 89, 635
TaqII GACCGA 1 cut(s) 240
TasI AATT 3 cut(s) 10, 127, 651
TatI WGTACW 3 cut(s) 210, 344, 763
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 2 cut(s) 68, 131
Tru9I TTAA 2 cut(s) 68, 131
TscAI CASTG 1 cut(s) 262
TseI GCWGC 9 cut(s) 308, 377, 380, 430, 437, 446, 449, 452, 721
TspDTI ATGAA 5 cut(s) 65, 529, 733, 774, 813
TspGWI ACGGA 1 cut(s) 613
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 252
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.